PDB Chemical Component B8N
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B8N
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OP1 |
P |
1.503 |
1.481 |
| P |
O5' |
1.587 |
1.610 |
| P |
OP2 |
1.502 |
1.610 |
| C5' |
O5' |
1.417 |
1.429 |
| C5' |
C4' |
1.504 |
1.530 |
| C4' |
O4' |
1.444 |
1.444 |
| C4' |
C3' |
1.516 |
1.550 |
| O4' |
C1' |
1.407 |
1.437 |
| O3' |
C3' |
1.417 |
1.429 |
| C3' |
C2' |
1.522 |
1.548 |
| C1' |
C2' |
1.530 |
1.540 |
| C1' |
C5 |
1.481 |
1.507 |
| O2' |
C2' |
1.417 |
1.430 |
| C6 |
C5 |
1.384 |
1.351 |
| C6 |
N1 |
1.332 |
1.368 |
| CN1 |
N1 |
1.461 |
1.465 |
| C5 |
C4 |
1.479 |
1.416 |
| N1 |
C2 |
1.400 |
1.345 |
| C4 |
O4 |
1.245 |
1.218 |
| C4 |
N3 |
1.397 |
1.348 |
| C2 |
N3 |
1.392 |
1.346 |
| C2 |
O2 |
1.240 |
1.216 |
| N3 |
C31 |
1.456 |
1.466 |
| C31 |
C32 |
1.519 |
1.530 |
| C32 |
C33 |
1.520 |
1.530 |
| O35 |
C34 |
1.220 |
1.208 |
| O36 |
C34 |
1.328 |
1.342 |
| C34 |
C33 |
1.495 |
1.508 |
| C33 |
N34 |
1.486 |
1.469 |
| C5' |
H1 |
1.100 |
1.090 |
| C5' |
H2 |
1.100 |
1.091 |
| C4' |
H3 |
1.100 |
1.089 |
| C3' |
H4 |
1.100 |
1.090 |
| O3' |
H5 |
0.950 |
0.967 |
| C2' |
H6 |
1.100 |
1.090 |
| O2' |
H7 |
0.950 |
0.967 |
| C1' |
H8 |
1.100 |
1.090 |
| C6 |
H9 |
1.080 |
1.080 |
| CN1 |
H10 |
1.100 |
1.090 |
| CN1 |
H11 |
1.100 |
1.090 |
| CN1 |
H12 |
1.100 |
1.089 |
| N34 |
H13 |
1.000 |
1.008 |
| N34 |
H14 |
1.000 |
1.008 |
| OP2 |
H17 |
0.950 |
0.966 |
| C31 |
H18 |
1.100 |
1.090 |
| C31 |
H19 |
1.100 |
1.089 |
| C32 |
H20 |
1.100 |
1.090 |
| C32 |
H21 |
1.101 |
1.089 |
| C33 |
H22 |
1.100 |
1.090 |
| O36 |
H23 |
0.950 |
0.967 |
| P |
OP3 |
1.602 |
1.609 |
| OP3 |
H15 |
0.950 |
0.967 |
Bond Angles for B8N
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
120.1 |
109.5 |
| OP1 |
P |
OP3 |
107.3 |
109.5 |
| P |
OP2 |
H17 |
109.5 |
114.0 |
| C5' |
C4' |
O4' |
109.1 |
110.6 |
| C5' |
C4' |
C3' |
115.5 |
110.6 |
| C4' |
C5' |
H1 |
109.0 |
109.5 |
| C4' |
C5' |
H2 |
109.0 |
109.5 |
| C5' |
C4' |
H3 |
109.1 |
110.6 |
| O4' |
C4' |
C3' |
104.1 |
103.5 |
| C4' |
O4' |
C1' |
110.0 |
107.0 |
| O4' |
C4' |
H3 |
110.0 |
110.6 |
| C4' |
C3' |
C2' |
102.8 |
102.1 |
| C3' |
C4' |
H3 |
109.0 |
110.8 |
| C4' |
C3' |
H4 |
108.9 |
110.9 |
| O4' |
C1' |
C2' |
107.9 |
107.3 |
| O4' |
C1' |
C5 |
109.2 |
109.9 |
| O4' |
C1' |
H8 |
109.9 |
109.8 |
| O3' |
C3' |
C2' |
113.4 |
110.9 |
| O3' |
C3' |
H4 |
110.4 |
110.9 |
| C2' |
C3' |
H4 |
108.9 |
110.9 |
| C3' |
C2' |
H6 |
111.4 |
110.5 |
| C1' |
C2' |
H6 |
111.3 |
110.5 |
| C1' |
C5 |
C4 |
120.5 |
120.5 |
| C5 |
C1' |
H8 |
108.8 |
110.0 |
| O2' |
C2' |
H6 |
113.1 |
110.4 |
| C6 |
C5 |
C4 |
119.0 |
119.1 |
| C6 |
N1 |
C2 |
121.4 |
120.6 |
| N1 |
C6 |
H9 |
119.5 |
120.2 |
| C5 |
C4 |
O4 |
120.8 |
120.3 |
| C5 |
C4 |
N3 |
118.3 |
119.4 |
| N1 |
C2 |
N3 |
121.1 |
120.9 |
| N1 |
C2 |
O2 |
119.7 |
119.5 |
| C4 |
N3 |
C31 |
121.4 |
119.9 |
| N3 |
C2 |
O2 |
119.2 |
119.6 |
| C2 |
N3 |
C31 |
119.5 |
119.8 |
| N3 |
C31 |
C32 |
112.3 |
109.4 |
| N3 |
C31 |
H18 |
108.8 |
109.4 |
| N3 |
C31 |
H19 |
108.8 |
109.5 |
| C31 |
C32 |
C33 |
109.8 |
109.4 |
| C32 |
C31 |
H18 |
108.7 |
109.5 |
| C32 |
C31 |
H19 |
108.8 |
109.5 |
| C31 |
C32 |
H20 |
109.4 |
109.4 |
| C31 |
C32 |
H21 |
109.4 |
109.5 |
| C34 |
C33 |
C32 |
108.4 |
109.4 |
| C33 |
C32 |
H20 |
109.4 |
109.5 |
| C33 |
C32 |
H21 |
109.4 |
109.5 |
| C32 |
C33 |
H22 |
108.8 |
109.5 |
| C34 |
C33 |
N34 |
111.1 |
109.5 |
| C34 |
C33 |
H22 |
109.1 |
109.4 |
| C33 |
N34 |
H13 |
109.5 |
111.0 |
| C33 |
N34 |
H14 |
109.5 |
111.0 |
| H1 |
C5' |
H2 |
109.5 |
109.4 |
| H10 |
CN1 |
H11 |
109.4 |
109.5 |
| H10 |
CN1 |
H12 |
109.5 |
109.5 |
| H11 |
CN1 |
H12 |
109.5 |
109.5 |
| H13 |
N34 |
H14 |
109.4 |
111.1 |
| H18 |
C31 |
H19 |
109.5 |
109.5 |
| H20 |
C32 |
H21 |
109.4 |
109.5 |
| P |
OP3 |
H15 |
109.5 |
114.0 |
Torsion Angles for B8N
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
H17 |
0.0 |
180.0 |
| OP1 |
P |
OP3 |
H15 |
360.0 |
60.0 |
| OP1 |
P |
OP2 |
OP3 |
124.0 |
240.0 |
| O4' |
C4' |
C5' |
C3' |
243.3 |
246.0 |
| C5' |
C4' |
O4' |
C1' |
147.8 |
158.5 |
| O4' |
C4' |
C5' |
H3 |
120.1 |
122.9 |
| C5' |
C4' |
C3' |
C2' |
204.8 |
204.5 |
| C3' |
C4' |
C5' |
H3 |
236.9 |
236.9 |
| C5' |
C4' |
C3' |
H4 |
320.2 |
322.7 |
| H1 |
C5' |
C4' |
H2 |
119.5 |
120.0 |
| C5' |
C4' |
O4' |
C3' |
123.8 |
118.5 |
| O4' |
C4' |
C5' |
H1 |
229.1 |
306.5 |
| O4' |
C4' |
C5' |
H2 |
109.7 |
186.5 |
| C5' |
C4' |
O4' |
H3 |
240.4 |
237.1 |
| O4' |
C4' |
C3' |
C2' |
324.3 |
323.0 |
| C3' |
C4' |
O4' |
H3 |
116.6 |
118.7 |
| O4' |
C4' |
C3' |
H4 |
79.7 |
81.2 |
| C4' |
O4' |
C1' |
C2' |
357.6 |
333.5 |
| C4' |
O4' |
C1' |
C5 |
234.6 |
214.1 |
| C4' |
O4' |
C1' |
H8 |
115.3 |
92.9 |
| C5' |
C4' |
C3' |
O4' |
240.5 |
241.5 |
| C3' |
C4' |
C5' |
H1 |
345.9 |
60.5 |
| C3' |
C4' |
C5' |
H2 |
226.4 |
300.5 |
| C5' |
C4' |
C3' |
H3 |
123.2 |
123.0 |
| C3' |
C4' |
O4' |
C1' |
24.0 |
40.1 |
| O4' |
C4' |
C3' |
H3 |
242.7 |
241.4 |
| O3' |
C3' |
C4' |
C2' |
237.9 |
241.8 |
| O3' |
C3' |
C4' |
H4 |
122.5 |
123.6 |
| C2' |
C3' |
C4' |
H4 |
244.6 |
241.8 |
| C4' |
C3' |
C2' |
H6 |
152.2 |
139.6 |
| C1' |
O4' |
C4' |
C3' |
24.0 |
40.1 |
| C1' |
O4' |
C4' |
H3 |
267.5 |
281.4 |
| O4' |
C1' |
C2' |
H6 |
221.1 |
243.3 |
| O4' |
C1' |
C5 |
C4 |
199.8 |
53.5 |
| C5 |
C1' |
O4' |
H8 |
119.3 |
121.1 |
| C4' |
C3' |
O3' |
C2' |
115.9 |
112.7 |
| O3' |
C3' |
C4' |
H3 |
319.5 |
323.4 |
| C4' |
C3' |
O3' |
H4 |
238.3 |
236.3 |
| C2' |
C3' |
O3' |
H4 |
122.4 |
123.7 |
| O3' |
C3' |
C2' |
H6 |
273.5 |
257.8 |
| C2' |
C3' |
C4' |
H3 |
81.6 |
81.5 |
| C4' |
C3' |
C2' |
H4 |
115.4 |
118.2 |
| O4' |
C1' |
C2' |
C3' |
340.0 |
2.0 |
| O3' |
C3' |
C2' |
H4 |
236.8 |
236.4 |
| C1' |
C2' |
C3' |
H6 |
241.2 |
241.3 |
| O2' |
C2' |
C3' |
H6 |
126.5 |
122.5 |
| O4' |
C1' |
C2' |
C5 |
239.3 |
240.5 |
| O4' |
C1' |
C2' |
H8 |
118.8 |
119.4 |
| C1' |
C2' |
C3' |
H4 |
277.9 |
262.7 |
| C3' |
C2' |
C1' |
H6 |
118.9 |
118.7 |
| O2' |
C2' |
C1' |
H6 |
235.2 |
237.4 |
| O4' |
C1' |
C5 |
C2' |
120.0 |
117.9 |
| O4' |
C1' |
C5 |
H8 |
240.1 |
239.0 |
| C5 |
C1' |
C2' |
H6 |
341.9 |
2.8 |
| C6 |
C5 |
C1' |
C4 |
178.5 |
180.3 |
| C1' |
C5 |
C4 |
O4 |
358.8 |
0.0 |
| C1' |
C5 |
C4 |
N3 |
179.4 |
179.7 |
| O4' |
C1' |
C2' |
O2' |
96.3 |
120.8 |
| O2' |
C2' |
C3' |
H4 |
163.3 |
143.9 |
| C3' |
C2' |
O2' |
H6 |
234.5 |
237.5 |
| C1' |
C2' |
O2' |
H6 |
123.7 |
122.6 |
| C1' |
C5 |
C6 |
C4 |
181.4 |
179.7 |
| C6 |
C5 |
C1' |
H8 |
138.2 |
354.9 |
| C6 |
C5 |
C4 |
O4 |
180.2 |
179.7 |
| C6 |
C5 |
C4 |
N3 |
0.9 |
359.4 |
| N1 |
C6 |
C5 |
C4 |
358.9 |
0.4 |
| C6 |
N1 |
C2 |
N3 |
359.9 |
360.0 |
| C6 |
N1 |
C2 |
O2 |
179.9 |
180.0 |
| CN1 |
N1 |
C6 |
H9 |
0.3 |
0.0 |
| CN1 |
N1 |
C2 |
O2 |
0.3 |
0.1 |
| C4 |
C5 |
C1' |
H8 |
319.7 |
174.6 |
| C5 |
C4 |
N3 |
C31 |
178.8 |
180.4 |
| C2 |
N1 |
C6 |
H9 |
180.7 |
180.1 |
| N3 |
C2 |
N1 |
O2 |
180.0 |
179.9 |
| N1 |
C2 |
N3 |
C31 |
180.9 |
180.0 |
| C5 |
C4 |
O4 |
N3 |
180.7 |
179.7 |
| O4 |
C4 |
N3 |
C31 |
359.4 |
0.0 |
| C5 |
C4 |
N3 |
O4 |
179.3 |
180.3 |
| C4 |
N3 |
C2 |
O2 |
179.8 |
179.7 |
| C2 |
N3 |
C4 |
C31 |
181.0 |
180.2 |
| C4 |
N3 |
C31 |
C32 |
81.8 |
270.3 |
| C4 |
N3 |
C31 |
H18 |
202.2 |
30.3 |
| C4 |
N3 |
C31 |
H19 |
321.4 |
150.3 |
| C5 |
C4 |
N3 |
C2 |
359.7 |
0.6 |
| N1 |
C2 |
N3 |
O2 |
180.0 |
180.1 |
| C4 |
N3 |
C2 |
C31 |
179.0 |
179.8 |
| C2 |
N3 |
C31 |
C32 |
260.8 |
90.1 |
| C2 |
N3 |
C31 |
H18 |
21.2 |
210.0 |
| C2 |
N3 |
C31 |
H19 |
140.4 |
330.1 |
| N1 |
C2 |
O2 |
N3 |
180.0 |
179.9 |
| O2 |
C2 |
N3 |
C31 |
0.8 |
359.9 |
| C31 |
N3 |
C2 |
O2 |
0.8 |
359.9 |
| N3 |
C31 |
C32 |
C33 |
211.5 |
180.0 |
| C32 |
C31 |
N3 |
H18 |
239.6 |
240.1 |
| C32 |
C31 |
N3 |
H19 |
120.4 |
120.0 |
| N3 |
C31 |
C32 |
H20 |
331.6 |
299.9 |
| N3 |
C31 |
C32 |
H21 |
91.5 |
60.0 |
| H18 |
C31 |
N3 |
H19 |
240.8 |
240.0 |
| N3 |
C31 |
C32 |
H18 |
120.4 |
119.9 |
| N3 |
C31 |
C32 |
H19 |
239.6 |
240.0 |
| C34 |
C33 |
C32 |
C31 |
90.5 |
185.0 |
| C33 |
C32 |
C31 |
H20 |
239.9 |
240.1 |
| C33 |
C32 |
C31 |
H21 |
120.1 |
120.0 |
| C31 |
C32 |
C33 |
H22 |
209.0 |
304.9 |
| H18 |
C31 |
C32 |
H19 |
119.2 |
120.1 |
| H20 |
C32 |
C31 |
H21 |
240.1 |
240.0 |
| C33 |
C32 |
C31 |
H18 |
91.1 |
60.1 |
| C33 |
C32 |
C31 |
H19 |
332.0 |
300.0 |
| C31 |
C32 |
C33 |
H20 |
120.1 |
119.9 |
| C31 |
C32 |
C33 |
H21 |
239.9 |
240.0 |
| C34 |
C33 |
C32 |
N34 |
121.8 |
120.0 |
| C34 |
C33 |
C32 |
H22 |
241.5 |
240.1 |
| C32 |
C33 |
N34 |
H13 |
180.0 |
296.0 |
| C32 |
C33 |
N34 |
H14 |
300.0 |
60.0 |
| H20 |
C32 |
C33 |
H21 |
119.9 |
120.1 |
| O35 |
C34 |
C33 |
H22 |
342.3 |
140.0 |
| O36 |
C34 |
C33 |
H22 |
162.7 |
320.0 |
| C31 |
C32 |
C33 |
C34 |
90.5 |
185.0 |
| C34 |
C33 |
C32 |
H20 |
330.4 |
65.1 |
| C34 |
C33 |
C32 |
H21 |
210.5 |
305.0 |
| C32 |
C33 |
C34 |
H22 |
118.3 |
120.0 |
| C34 |
C33 |
N34 |
H13 |
59.9 |
176.0 |
| C34 |
C33 |
N34 |
H14 |
179.9 |
300.0 |
| C34 |
C33 |
N34 |
C32 |
239.9 |
240.0 |
| C34 |
C33 |
N34 |
H22 |
120.4 |
120.0 |
| H13 |
N34 |
C33 |
H14 |
240.0 |
236.0 |
| H1 |
C5' |
C4' |
O4' |
229.1 |
306.5 |
| H1 |
C5' |
C4' |
C3' |
345.9 |
60.5 |
| C4' |
C5' |
H1 |
H2 |
240.8 |
240.0 |
| H1 |
C5' |
C4' |
H3 |
109.0 |
183.6 |
| H2 |
C5' |
C4' |
O4' |
109.7 |
186.5 |
| H2 |
C5' |
C4' |
C3' |
226.4 |
300.5 |
| C4' |
C5' |
H2 |
H1 |
119.2 |
120.0 |
| H2 |
C5' |
C4' |
H3 |
349.5 |
63.6 |
| C5' |
C4' |
H3 |
O4' |
119.6 |
122.9 |
| C5' |
C4' |
H3 |
C3' |
233.1 |
237.0 |
| H3 |
C4' |
C5' |
H1 |
109.0 |
183.6 |
| H3 |
C4' |
C5' |
H2 |
349.5 |
63.6 |
| O4' |
C4' |
H3 |
C3' |
113.5 |
114.1 |
| H3 |
C4' |
O4' |
C1' |
267.5 |
281.4 |
| H3 |
C4' |
C3' |
C2' |
81.6 |
81.5 |
| H3 |
C4' |
C3' |
H4 |
197.0 |
199.7 |
| C4' |
C3' |
H4 |
C2' |
248.6 |
247.3 |
| H4 |
C3' |
C4' |
H3 |
197.0 |
199.7 |
| O3' |
C3' |
H4 |
C2' |
125.0 |
123.7 |
| H4 |
C3' |
C2' |
H6 |
36.8 |
21.4 |
| H5 |
O3' |
C3' |
C2' |
64.1 |
67.3 |
| H5 |
O3' |
C3' |
H4 |
301.7 |
303.7 |
| H6 |
C2' |
C3' |
H4 |
36.8 |
21.4 |
| H7 |
O2' |
C2' |
H6 |
305.5 |
61.1 |
| O4' |
C1' |
H8 |
C2' |
242.5 |
242.2 |
| O4' |
C1' |
H8 |
C5 |
119.5 |
121.1 |
| H8 |
C1' |
C2' |
H6 |
102.4 |
123.9 |
| H8 |
C1' |
C5 |
C4 |
319.7 |
174.6 |
| H9 |
C6 |
C5 |
C4 |
178.9 |
180.2 |
| H9 |
C6 |
N1 |
C2 |
180.7 |
180.1 |
| H11 |
CN1 |
H10 |
H12 |
120.0 |
120.1 |
| H10 |
CN1 |
H11 |
H12 |
240.0 |
240.0 |
| H10 |
CN1 |
H12 |
H11 |
119.9 |
120.0 |
| C33 |
N34 |
H13 |
H14 |
120.0 |
123.9 |
| C33 |
N34 |
H14 |
H13 |
240.0 |
236.1 |
| N3 |
C31 |
H18 |
C32 |
237.4 |
240.1 |
| N3 |
C31 |
H18 |
H19 |
118.7 |
120.0 |
| H18 |
C31 |
C32 |
C33 |
91.1 |
60.1 |
| C32 |
C31 |
H18 |
H19 |
241.3 |
239.9 |
| H18 |
C31 |
C32 |
H20 |
211.2 |
180.0 |
| H18 |
C31 |
C32 |
H21 |
331.0 |
300.1 |
| N3 |
C31 |
H19 |
C32 |
122.6 |
120.0 |
| N3 |
C31 |
H19 |
H18 |
241.3 |
240.0 |
| H19 |
C31 |
C32 |
C33 |
332.0 |
300.0 |
| C32 |
C31 |
H19 |
H18 |
118.7 |
120.1 |
| H19 |
C31 |
C32 |
H20 |
92.0 |
59.9 |
| H19 |
C31 |
C32 |
H21 |
211.9 |
180.0 |
| C31 |
C32 |
H20 |
C33 |
239.7 |
240.1 |
| H20 |
C32 |
C31 |
H18 |
211.2 |
180.0 |
| H20 |
C32 |
C31 |
H19 |
92.0 |
59.9 |
| C31 |
C32 |
H20 |
H21 |
119.8 |
120.0 |
| C33 |
C32 |
H20 |
H21 |
240.1 |
239.9 |
| H20 |
C32 |
C33 |
H22 |
88.9 |
185.0 |
| C31 |
C32 |
H21 |
C33 |
120.3 |
120.0 |
| H21 |
C32 |
C31 |
H18 |
331.0 |
300.1 |
| H21 |
C32 |
C31 |
H19 |
211.9 |
180.0 |
| C31 |
C32 |
H21 |
H20 |
240.2 |
240.0 |
| C33 |
C32 |
H21 |
H20 |
119.8 |
120.1 |
| H21 |
C32 |
C33 |
H22 |
329.1 |
64.9 |
| C34 |
C33 |
H22 |
C32 |
118.1 |
120.0 |
| H22 |
C33 |
C32 |
H20 |
88.9 |
185.0 |
| H22 |
C33 |
C32 |
H21 |
329.1 |
64.9 |
| C34 |
C33 |
H22 |
N34 |
238.4 |
240.0 |
| H22 |
C33 |
N34 |
H13 |
299.5 |
56.1 |
| H22 |
C33 |
N34 |
H14 |
59.5 |
180.1 |
| OP1 |
P |
OP3 |
OP2 |
228.7 |
120.0 |
| OP3 |
P |
OP2 |
H17 |
236.0 |
300.1 |