PDB Chemical Component B8H

Ideal Model

Chemical Description

Name [(2~{R},3~{S},4~{R},5~{S})-5-[1-methyl-2,4-bis(oxidanylidene)pyrimidin-5-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate
Formula C10 H15 N2 O9 P
Formal charge 0
Molecular weight 338.208 g/mol
Component type RNA linking
Nonstandard Parent Id U

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms O1
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},4~{R},5~{S})-5-[1-methyl-2,4-bis(oxidanylidene)pyrimidin-5-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN1C=C([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)NC1=O
SMILES (CACTVS) CN1C=C([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)NC1=O
Stereo SMILES (OpenEye) CN1C=C(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C10H15N2O9P/c1-12-2-4(9(15)11-10(12)16)8-7(14)6(13)5(21-8)3-20-22(17,18)19/h2,5-8,13-14H,3H2,1H3,(H,11,15,16)(H2,17,18,19)/t5-,6-,7-,8+/m1/s1
InChIKey descriptor VORAOZTXNOXTGQ-XUTVFYLZSA-N

Status Information

Last modified 2019-05-06
Created 2017-09-25
Release status REL
Model PDB code 6EK0
Processing site EBI