PDB Chemical Component B8D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B8D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O1	C1	1.437	1.429
O1	HO1	0.950	0.967
C1	C2	1.565	1.531
C1	O5	1.429	1.429
C1	H1	1.100	1.090
O2	C2	1.411	1.429
C3	C2	1.571	1.531
C2	H2	1.100	1.090
O2	HO2	0.950	0.967
C3	O3	1.420	1.430
C3	C4	1.586	1.532
C3	H3	1.100	1.090
O3	HO3	0.950	0.967
O4	C4	1.447	1.429
C4	C5	1.573	1.531
C4	H4	1.100	1.090
O4	CJ7	1.454	1.429
C5	O5	1.436	1.429
C5	C6	1.537	1.531
C5	H5	1.100	1.090
C6	O6	1.427	1.429
C6	H61	1.100	1.090
C6	H62	1.100	1.089
O6	HO6	0.950	0.967
CJ7	HJ7	1.100	1.090
CJ7	HJ7A	1.099	1.090
CJ7	HJ7B	1.099	1.089

Bond Angles for B8D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	O1	HO1	109.5	114.0
O1	C1	C2	114.0	109.5
O1	C1	O5	112.1	109.5
O1	C1	H1	103.5	109.5
C2	C1	O5	106.6	109.4
C2	C1	H1	109.4	109.5
C1	C2	H2	108.1	109.5
O5	C1	H1	111.3	109.4
C1	O5	C5	118.0	114.1
O2	C2	H2	108.3	109.5
C3	C2	H2	110.4	109.5
O3	C3	C4	110.6	109.5
O3	C3	H3	108.7	109.5
C3	O3	HO3	109.5	114.0
C4	C3	H3	107.8	109.6
C3	C4	C5	109.9	109.1
C3	C4	H4	108.5	109.5
O4	C4	C5	108.1	109.6
O4	C4	H4	110.2	109.6
C5	C4	H4	110.2	109.5
C4	C5	O5	113.6	109.4
C4	C5	C6	111.7	109.5
C4	C5	H5	104.6	109.5
O4	CJ7	HJ7	109.5	109.5
O4	CJ7	HJ7A	109.5	109.4
O4	CJ7	HJ7B	109.5	109.5
O5	C5	C6	108.3	109.5
O5	C5	H5	108.3	109.5
C6	C5	H5	110.3	109.5
C5	C6	O6	109.5	109.5
C5	C6	H61	109.4	109.4
C5	C6	H62	109.5	109.5
O6	C6	H61	109.4	109.5
O6	C6	H62	109.5	109.5
C6	O6	HO6	109.5	114.0
H61	C6	H62	109.5	109.4
HJ7	CJ7	HJ7A	109.5	109.5
HJ7	CJ7	HJ7B	109.5	109.4
HJ7A	CJ7	HJ7B	109.5	109.5

Torsion Angles for B8D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	O1	O5	121.2	120.0
C2	C1	O1	H1	241.3	240.0
O1	C1	C2	H2	176.5	177.7
O5	C1	O1	H1	120.1	120.0
O1	C1	O5	C5	63.3	58.8
HO1	O1	C1	C2	180.0	180.0
HO1	O1	C1	O5	58.8	60.1
HO1	O1	C1	H1	298.7	300.1
C2	C1	O1	HO1	180.0	180.0
O1	C1	C2	O5	235.8	240.0
O1	C1	C2	H1	115.3	120.1
O5	C1	C2	H1	239.5	240.1
C2	C1	O5	C5	297.9	298.8
O2	C2	C1	H2	241.1	239.9
C3	C2	C1	H2	120.2	119.9
O5	C1	O1	HO1	58.8	60.1
O1	C1	O5	C2	125.4	120.0
O1	C1	O5	H1	244.6	240.0
C2	C1	O5	H1	119.2	120.0
O5	C1	C2	H2	300.7	297.7
C4	C5	O5	C1	54.9	61.2
C1	O5	C5	C6	179.6	181.1
C1	O5	C5	H5	299.2	301.2
H1	C1	O1	HO1	298.7	300.1
O1	C1	H1	C2	238.1	239.9
O1	C1	H1	O5	120.6	120.0
C2	C1	H1	O5	242.5	240.1
H1	C1	C2	H2	61.2	57.7
H1	C1	O5	C5	178.7	178.9
O2	C2	C1	O5	181.8	177.6
O2	C2	C1	H1	302.3	297.6
C1	C2	O2	H2	118.7	120.1
C3	C2	O2	H2	239.7	239.8
C3	C2	C1	O5	61.0	57.6
C3	C2	C1	H1	181.4	177.5
C1	C2	C3	H2	241.2	240.1
O2	C2	C3	H2	119.0	120.2
H2	C2	C1	O5	300.7	297.7
H2	C2	C1	H1	61.2	57.7
HO2	O2	C2	H2	61.3	299.8
O3	C3	C2	H2	299.0	303.0
C4	C3	O3	H3	118.2	120.2
O3	C3	C4	C5	169.6	176.9
O3	C3	C4	H4	49.1	57.0
C4	C3	C2	H2	62.2	62.9
O3	C3	C4	H3	241.3	239.9
C4	C3	O3	HO3	56.5	180.4
O4	C4	C3	C5	118.9	120.0
O4	C4	C3	H4	239.4	239.8
C5	C4	C3	H4	120.6	119.9
C3	C4	C5	O5	316.4	302.4
C3	C4	C5	C6	193.6	182.5
C3	C4	C5	H5	74.3	62.4
H3	C3	C2	H2	180.3	182.8
O3	C3	H3	C4	119.9	120.1
H3	C3	O3	HO3	298.4	60.3
H3	C3	C4	C5	288.3	297.0
H3	C3	C4	H4	167.8	177.1
HO3	O3	C3	C4	56.5	180.4
HO3	O3	C3	H3	298.4	60.3
O4	C4	C3	H3	47.2	56.9
C3	C4	O4	C5	240.0	240.3
C3	C4	O4	H4	119.5	120.2
C5	C4	O4	H4	239.5	239.9
O4	C4	C5	O5	196.5	182.5
O4	C4	C5	C6	73.6	62.5
O4	C4	C5	H5	314.3	302.5
C1	O5	C5	C4	54.9	61.2
C5	C4	C3	H3	288.3	297.0
C3	C4	C5	H4	240.5	240.1
O4	C4	C5	H4	120.5	120.2
O5	C5	C4	C6	122.9	120.0
O5	C5	C4	H5	242.2	240.0
C6	C5	C4	H5	119.3	120.0
C4	C5	C6	O6	69.0	185.0
C4	C5	C6	H61	189.0	305.0
C4	C5	C6	H62	309.0	65.0
H4	C4	C3	H3	167.8	177.1
C3	C4	H4	C5	120.4	119.6
O4	C4	H4	C5	240.7	239.8
H4	C4	C5	O5	75.9	62.3
H4	C4	C5	C6	313.1	302.3
H4	C4	C5	H5	193.8	182.3
CJ7	O4	C4	C5	244.3	209.7
CJ7	O4	C4	H4	4.9	329.9
HJ7	CJ7	O4	HJ7A	240.0	240.0
HJ7	CJ7	O4	HJ7B	120.0	120.0
HJ7A	CJ7	O4	HJ7B	240.0	240.0
C5	O5	C1	H1	178.7	178.9
O5	C5	C4	H4	75.9	62.3
C4	C5	O5	C6	235.3	240.0
C4	C5	O5	H5	115.7	120.0
C6	C5	O5	H5	240.4	240.0
O5	C5	C6	O6	303.2	65.1
O5	C5	C6	H61	63.2	185.1
O5	C5	C6	H62	183.2	305.0
C6	C5	C4	H4	313.1	302.3
C4	C5	C6	O5	125.8	119.9
C4	C5	C6	H5	244.1	240.0
O5	C5	C6	H5	118.3	120.0
O6	C6	C5	H61	240.0	240.0
O6	C6	C5	H62	120.0	120.1
C5	C6	O6	HO6	180.0	180.0
H61	C6	C5	H62	240.0	240.1
H5	C5	C4	H4	193.8	182.3
C4	C5	H5	O5	238.6	240.0
C4	C5	H5	C6	120.3	120.0
O5	C5	H5	C6	241.7	240.0
H5	C5	C6	O6	184.9	305.1
H5	C5	C6	H61	304.9	65.0
H5	C5	C6	H62	64.9	185.0
O6	C6	C5	H5	184.9	305.1
C5	C6	O6	H61	120.0	120.0
C5	C6	O6	H62	240.0	239.9
H61	C6	O6	H62	120.0	120.0
H61	C6	C5	H5	304.9	65.0
C5	C6	H61	O6	240.0	240.0
C5	C6	H61	H62	120.0	120.0
O6	C6	H61	H62	240.0	240.0
H61	C6	O6	HO6	60.0	60.0
H62	C6	C5	H5	64.9	185.0
C5	C6	H62	O6	120.1	120.0
C5	C6	H62	H61	240.0	240.0
O6	C6	H62	H61	120.0	120.0
H62	C6	O6	HO6	300.0	300.0
HO6	O6	C6	H61	60.0	60.0
HO6	O6	C6	H62	300.0	300.0
O4	CJ7	HJ7	HJ7A	120.0	119.9
O4	CJ7	HJ7	HJ7B	240.0	240.0
HJ7A	CJ7	HJ7	HJ7B	120.0	120.0
O4	CJ7	HJ7A	HJ7	240.0	240.0
O4	CJ7	HJ7A	HJ7B	120.0	120.0
HJ7	CJ7	HJ7A	HJ7B	240.0	240.0
O4	CJ7	HJ7B	HJ7	120.0	120.0
O4	CJ7	HJ7B	HJ7A	240.0	240.0
HJ7	CJ7	HJ7B	HJ7A	120.0	120.0