PDB Chemical Component B86

Ideal Model

Chemical Description

Name 2'-deoxy-5-fluorocytidine
Formula C9 H12 F N3 O4
Formal charge 0
Molecular weight 245.208 g/mol
Component type NON-POLYMER

Chemical features

Atom count 29
Chiral atom count 3
Chiral atoms C10 C12 C13
Bond count 30
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-fluorocytidine
Systematic name (OpenEye OEToolkits) 4-azanyl-5-fluoro-1-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidin-2-one

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1F)[C@H]2C[C@H](O)[C@@H](CO)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1F)[CH]2C[CH](O)[CH](CO)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)F)CO)O
InChI descriptor InChI=1S/C9H12FN3O4/c10-4-2-13(9(16)12-8(4)11)7-1-5(15)6(3-14)17-7/h2,5-7,14-15H,1,3H2,(H2,11,12,16)/t5-,6+,7+/m0/s1
InChIKey descriptor IDYKCXHJJGMAEV-RRKCRQDMSA-N

Status Information

Last modified 2011-06-04
Created 2009-08-19
Release status REL
Model PDB code 3IPX
Processing site RCSB