PDB Chemical Component B7P

Ideal Model

Chemical Description

Name 2'-deoxy-5-fluorouridine 5'-(tetrahydrogen triphosphate)
Synonyms 5-FdUTP
Formula C9 H14 F N2 O14 P3
Formal charge 0
Molecular weight 486.132 g/mol
Component type NON-POLYMER

Chemical features

Atom count 43
Chiral atom count 3
Chiral atoms C02 C04 C06
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-fluorouridine 5'-(tetrahydrogen triphosphate)
Systematic name (OpenEye OEToolkits) [[(2~{R},3~{S},5~{R})-5-[5-fluoranyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(F)C(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(F)C(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)F)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O
InChI descriptor InChI=1S/C9H14FN2O14P3/c10-4-2-12(9(15)11-8(4)14)7-1-5(13)6(24-7)3-23-28(19,20)26-29(21,22)25-27(16,17)18/h2,5-7,13H,1,3H2,(H,19,20)(H,21,22)(H,11,14,15)(H2,16,17,18)/t5-,6+,7+/m0/s1
InChIKey descriptor YQOCUTDPKPPQGA-RRKCRQDMSA-N

Status Information

Last modified 2021-03-01
Created 2017-08-03
Release status REL
Model PDB code 5WNY
Processing site RCSB