PDB Chemical Component B7C

Ideal Model

Chemical Description

Name 3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7,8-dihydropyrido[2,3-d]pyrimidin-2(3H)-one
Formula C12 H16 N3 O7 P
Formal charge 0
Molecular weight 345.245 g/mol
Component type DNA linking
Nonstandard Parent Id DC

Chemical features

Atom count 39
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7,8-dihydropyrido[2,3-d]pyrimidin-2(3H)-one
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-(2-oxo-7,8-dihydropyrido[2,3-d]pyrimidin-3-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C3C=CCNC3=NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C3C=CCNC3=NC2=O
Stereo SMILES (OpenEye) C1C=CC2=CN(C(=O)N=C2N1)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H16N3O7P/c16-8-4-10(22-9(8)6-21-23(18,19)20)15-5-7-2-1-3-13-11(7)14-12(15)17/h1-2,5,8-10,16H,3-4,6H2,(H,13,14,17)(H2,18,19,20)/t8-,9+,10+/m0/s1
InChIKey descriptor TVIUKNIUQVYWKE-IVZWLZJFSA-N

Status Information

Last modified 2011-06-04
Created 2009-04-30
Release status REL
Model PDB code 3GJH
Processing site PDBJ