Atom Nomenclature for B72

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for B72

Atom Name (V3) Atom Name (V2)
O1 O1
C20 C20
O2 O2
C19 C19
O3 O3
C1 C1
C2 C2
C3 C3
C17 C17
C4 C4
C5 C5
C6 C6
C18 C18
C7 C7
C8 C8
C13 C13
C12 C12
C14 C14
C16 C16
C15 C15
C11 C11
O4 O4
C10 C10
C9 C9
H119 H119
H219 H219
H2 H2
H117 H117
H217 H217
H317 H317
H6 H6
H118 H118
H218 H218
H318 H318
H17 H17
H27 H27
H13 H13
H14 H14
H116 H116
H216 H216
H316 H316
H115 H115
H215 H215
H315 H315
HO4 HO4
H10 H10
H9 H9
H24 H24