Atom Nomenclature for B71

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for B71

Atom Name (V3) Atom Name (V2)
CAA CAA
CAL CAL
CAM CAM
CAN CAN
CAO CAO
CAP CAP
CAQ CAQ
CAR CAR
CAS CAS
CAT CAT
OAV OAV
CAW CAW
CAK CAK
CAI CAI
CAH CAH
CAJ CAJ
NAY NAY
CAU CAU
CAX CAX
PBA PBA
OAF OAF
OAG OAG
OAC OAC
PAZ PAZ
OAD OAD
OAE OAE
OAB OAB
HAA1 1HAA
HAA2 2HAA
HAA3 3HAA
HAL1 1HAL
HAL2 2HAL
HAM1 1HAM
HAM2 2HAM
HAN1 1HAN
HAN2 2HAN
HAO1 1HAO
HAO2 2HAO
HAP1 1HAP
HAP2 2HAP
HAQ1 1HAQ
HAQ2 2HAQ
HAR1 1HAR
HAR2 2HAR
HAS1 1HAS
HAS2 2HAS
HAT1 1HAT
HAT2 2HAT
HAK HAK
HAI HAI
HAH HAH
HAJ HAJ
HAU1 1HAU
HAU2 2HAU
HAX HAX
HOAG HOAG
HOAC HOAC
HOAD HOAD
HOAB HOAB