PDB Chemical Component B6P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B6P

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C6 N1 1.356 1.329
C2 N1 1.344 1.321
N3 C2 1.356 1.316
C2 H2 1.080 1.081
C4 N3 1.346 1.328
N9 C4 1.351 1.372
C4 C5 1.383 1.405
N7 C5 1.383 1.354
C5 C6 1.391 1.405
C6 N6 1.338 1.384
N6 HN6 1.000 0.970
N6 HN6A 1.000 0.970
C8 N7 1.367 1.302
C8 N9 1.343 1.363
C8 H8 1.080 1.080
C11 N9 1.475 1.465
O2A PA 1.524 1.479
O3A PA 1.689 1.610
PA O1A 1.495 1.610
PA O51 1.594 1.611
O1B PB 1.503 1.480
O3B PB 1.610 1.610
PB O2B 1.500 1.610
PB O3A 1.669 1.610
O2D PD 1.532 1.481
O1D PD 1.537 1.610
PD O3D 1.631 1.610
PD O3G 1.637 1.610
O3E PE 1.519 1.610
O1E PE 1.523 1.479
PE O3D 1.642 1.610
PE O2E 1.527 1.610
O3G PG 1.626 1.610
O2G PG 1.533 1.480
PG O1G 1.542 1.610
PG O3B 1.622 1.610
O52 PZ 1.595 1.610
O2Z PZ 1.525 1.480
PZ O1Z 1.494 1.609
PZ O3E 1.510 1.610
O41 C11 1.447 1.444
C21 C11 1.502 1.550
C11 H11 1.100 1.090
C22 C12 1.502 1.544
C12 N9Y 1.475 1.465
C12 O42 1.447 1.445
C12 H12 1.099 1.090
O1A HO1A 0.951 0.967
O1D HO1D 0.950 0.967
O1G HO1G 0.950 0.967
C2Y N1Y 1.343 1.321
N1Y C6Y 1.357 1.329
O1Z HO1Z 0.950 0.967
C31 C21 1.532 1.547
C21 O21 1.444 1.429
C21 H21 1.100 1.090
O21 HO21 0.950 0.967
O22 C22 1.443 1.429
C22 C32 1.532 1.545
C22 H22 1.100 1.091
O22 HO22 0.950 0.968
O2B HO2B 0.950 0.967
O2E HO2E 0.950 0.967
C2Y N3Y 1.356 1.317
C2Y H2Y 1.080 1.079
C41 C31 1.547 1.542
C31 O31 1.434 1.429
C31 H31 1.101 1.090
O31 HO31 0.950 0.966
O32 C32 1.434 1.430
C32 C42 1.547 1.544
C32 H32 1.100 1.090
O32 HO32 0.950 0.968
N3Y C4Y 1.347 1.329
C51 C41 1.528 1.529
C41 O41 1.418 1.438
C41 H41 1.100 1.089
O42 C42 1.418 1.445
C42 C52 1.529 1.530
C42 H42 1.100 1.089
C4Y N9Y 1.351 1.372
C4Y C5Y 1.383 1.406
O51 C51 1.427 1.429
C51 H51 1.100 1.090
C51 H51A 1.100 1.090
O52 C52 1.426 1.430
C52 H52 1.100 1.090
C52 H52A 1.101 1.089
C6Y C5Y 1.391 1.406
C5Y N7Y 1.383 1.354
C6Y N6Y 1.338 1.384
N6Y HN6Y 1.000 0.971
N6Y HN6B 1.000 0.970
C8Y N7Y 1.367 1.301
N9Y C8Y 1.342 1.363
C8Y H8Y 1.080 1.080

Bond Angles for B6P

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N3 C2 H2 119.3 118.8
C4 C5 C6 117.7 118.2
C5 C6 N6 118.3 120.7
C6 N6 HN6 109.5 120.0
C6 N6 HN6A 109.5 120.0
HN6 N6 HN6A 109.5 120.0
N9 C8 H8 125.1 125.0
O2A PA O51 108.4 109.5
O3A PA O51 99.1 109.5
O1A PA O51 113.5 109.5
PA O1A HO1A 109.5 114.0
PA O51 C51 118.2 123.0
O1B PB O2B 113.3 109.5
O1B PB O3A 107.9 109.4
O2B PB O3A 115.2 109.5
PB O2B HO2B 109.5 114.0
O2D PD O3D 111.1 109.5
O2D PD O3G 102.9 109.4
O1D PD O3D 108.7 109.5
O1D PD O3G 106.4 109.5
O3D PD O3G 108.1 109.5
PD O3D PE 125.2 134.0
PD O3G PG 126.3 134.0
O1E PE O3D 106.5 109.5
O1E PE O2E 115.3 109.5
O2E PE O3D 101.8 109.5
PE O2E HO2E 109.5 114.0
O2G PG O3B 109.2 109.5
O1G PG O3B 104.1 109.5
PG O1G HO1G 109.5 114.0
O2Z PZ O3E 118.5 109.5
O1Z PZ O3E 99.6 109.5
PZ O1Z HO1Z 109.5 114.0
O41 C11 H11 115.9 110.6
C21 C11 H11 109.5 110.6
C22 C12 N9Y 113.6 110.4
C22 C12 O42 104.3 104.8
C22 C12 H12 109.4 110.5
O42 C12 N9Y 106.8 110.3
N9Y C12 H12 107.0 110.4
C12 N9Y C4Y 122.9 126.2
C12 N9Y C8Y 128.4 126.3
O42 C12 H12 116.0 110.4
C12 O42 C42 113.1 105.2
C2Y N1Y C6Y 120.6 121.2
N1Y C6Y C5Y 119.6 118.5
N1Y C6Y N6Y 122.1 120.8
C31 C21 H21 113.1 111.0
O21 C21 H21 98.8 110.8
C21 O21 HO21 109.5 114.0
O22 C22 C32 116.7 110.5
O22 C22 H22 98.7 110.6
C32 C22 H22 113.1 110.5
C22 C32 C42 104.6 104.1
C22 C32 H32 111.8 110.5
N3Y C2Y H2Y 119.3 118.8
C2Y N3Y C4Y 118.8 120.7
C41 C31 H31 112.4 110.6
O31 C31 H31 105.1 110.4
C31 O31 HO31 109.5 114.0
O32 C32 C42 111.3 110.5
O32 C32 H32 105.1 110.5
C42 C32 H32 112.4 110.6
C32 C42 C52 112.6 110.4
C32 C42 H42 111.8 110.4
N3Y C4Y N9Y 130.7 134.9
N3Y C4Y C5Y 121.8 119.1
C51 C41 H41 106.5 110.0
O41 C41 H41 116.5 109.7
O42 C42 C52 107.6 110.3
O42 C42 H42 116.5 110.4
C52 C42 H42 106.5 110.4
C42 C52 H52 110.8 109.4
C42 C52 H52A 110.8 109.5
C5Y C4Y N9Y 107.4 106.0
C4Y N9Y C8Y 108.7 107.4
C4Y C5Y N7Y 108.0 107.1
O51 C51 H51 110.8 109.4
O51 C51 H51A 110.8 109.5
H51 C51 H51A 108.1 109.4
O52 C52 H52 110.8 109.4
O52 C52 H52A 110.8 109.5
H52 C52 H52A 108.1 109.5
C6Y C5Y N7Y 134.1 134.7
C6Y N6Y HN6Y 109.5 120.0
C6Y N6Y HN6B 109.4 120.0
HN6Y N6Y HN6B 109.5 120.0
N9Y C8Y H8Y 125.1 125.0

Torsion Angles for B6P

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C4 N3 C2 H2 179.8 180.0
C4 C5 C6 N6 182.4 179.9
C5 C6 N6 HN6 179.3 360.0
C5 C6 N6 HN6A 299.3 180.0
HN6 N6 C6 HN6A 240.0 180.0
C6 N6 HN6 HN6A 120.0 180.0
C6 N6 HN6A HN6 240.0 180.0
C11 N9 C8 H8 0.8 360.0
O3A PA O2A O51 106.2 120.0
O1A PA O2A O51 227.7 240.0
O2A PA O1A HO1A 360.0 180.0
O2A PA O51 C51 186.9 305.0
O2A PA O3A O51 247.3 240.0
O1A PA O3A O51 118.0 119.9
O3A PA O1A HO1A 121.9 300.0
O3A PA O51 C51 75.1 184.9
O2A PA O1A O51 130.1 120.0
O3A PA O1A O51 251.9 240.1
O1A PA O51 C51 322.4 65.0
O51 PA O1A HO1A 229.9 60.0
PA O51 C51 H51 54.7 60.0
PA O51 C51 H51A 294.7 300.0
O2B PB O1B O3A 128.9 120.0
O1B PB O2B HO2B 360.0 180.0
O3B PB O2B HO2B 239.9 60.0
O1B PB O2B O3A 235.0 240.0
PB O3A PA O51 116.9 165.0
O1B PB O3A O2B 127.8 120.0
O3A PB O2B HO2B 125.0 300.0
O1D PD O2D O3D 127.3 120.0
O1D PD O2D O3G 242.8 240.0
O3D PD O2D O3G 115.5 120.0
O2D PD O3D PE 330.4 45.0
O2D PD O3G PG 111.0 320.0
O2D PD O1D O3D 231.6 240.0
O2D PD O1D O3G 115.4 120.0
O3D PD O1D O3G 243.8 240.0
O1D PD O3D PE 197.7 285.0
O1D PD O3G PG 236.8 80.0
O2D PD O3D O3G 247.8 240.0
O1D PD O3D O3G 115.1 120.0
O3D PD O3G PG 353.4 200.0
O1E PE O3D PD 355.6 45.0
O2E PE O3D PD 234.5 285.0
O2D PD O3G O3D 117.6 120.0
O1D PD O3G O3D 243.4 240.0
O3G PD O3D PE 82.6 165.0
O3E PE O2E HO2E 229.2 60.0
PD O3D PE O1E 355.6 45.0
O2E PE O1E O3D 112.1 120.0
O1E PE O2E HO2E 0.0 180.0
PE O3D PD O3G 82.6 165.0
O1E PE O3D O2E 121.1 120.0
O3D PE O2E HO2E 114.8 300.0
PD O3D PE O2E 234.5 285.0
O1E PE O2E O3D 245.2 240.0
O3G PG O1G HO1G 228.7 60.0
PD O3G PG O2G 259.1 320.0
O1G PG O2G O3B 118.0 120.0
O2G PG O1G HO1G 0.0 180.0
PD O3G PG O1G 33.0 80.0
O2G PG O1G O3B 239.3 240.0
PD O3G PG O3B 143.2 200.0
O3B PG O1G HO1G 120.7 300.0
O52 PZ O1Z HO1Z 229.9 60.0
O1Z PZ O2Z O3E 121.7 120.0
O2Z PZ O1Z HO1Z 360.0 180.0
O2Z PZ O1Z O3E 229.3 240.0
O3E PZ O1Z HO1Z 130.7 300.0
C21 C11 O41 H11 239.6 241.4
O41 C11 C21 H11 124.6 118.5
O42 C12 C22 N9Y 244.2 241.2
N9Y C12 C22 H12 240.5 237.7
C22 C12 N9Y C4Y 102.1 88.2
C22 C12 N9Y C8Y 280.3 268.2
O42 C12 C22 H12 124.7 118.9
C22 C12 O42 C42 337.9 319.5
C22 C12 N9Y O42 245.7 244.6
C22 C12 N9Y H12 120.9 122.4
O42 C12 N9Y H12 235.2 237.8
N9Y C12 O42 C42 217.4 200.7
N3Y C4Y N9Y C12 359.3 360.0
C5Y C4Y N9Y C12 177.7 180.0
C4Y N9Y C12 C8Y 181.8 180.0
C12 N9Y C8Y H8Y 0.8 0.0
C22 C12 O42 N9Y 120.5 118.8
C22 C12 O42 H12 239.6 241.0
N9Y C12 O42 H12 119.1 122.2
O42 C12 N9Y C4Y 216.4 203.5
O42 C12 N9Y C8Y 34.6 23.5
C12 O42 C42 C52 115.1 159.3
C12 O42 C42 H42 234.5 281.6
C22 C12 H12 N9Y 236.5 237.7
C22 C12 H12 O42 117.5 115.5
O42 C12 H12 N9Y 119.0 122.2
H12 C12 N9Y C4Y 341.2 325.8
H12 C12 N9Y C8Y 159.4 145.8
H12 C12 O42 C42 98.3 78.4
HO1A O1A PA O51 229.9 60.0
HO1D O1D PD O3D 128.4 300.0
HO1D O1D PD O3G 244.6 60.0
HO1G O1G PG O3B 120.7 300.0
C2Y N1Y C6Y C5Y 0.6 359.9
C2Y N1Y C6Y N6Y 179.9 180.0
N1Y C6Y C5Y N7Y 176.4 180.0
N1Y C6Y N6Y HN6Y 0.0 360.0
N1Y C6Y N6Y HN6B 120.0 180.0
HO1Z O1Z PZ O3E 130.7 300.0
C31 C21 C11 H11 272.5 278.4
O21 C21 C31 H21 113.6 123.6
C31 C21 O21 HO21 294.7 292.7
O21 C21 C11 H11 37.2 36.6
C31 C21 O21 H21 238.5 236.3
H21 C21 C11 H11 150.8 160.1
H21 C21 O21 HO21 56.2 56.4
HO21 O21 C21 H21 56.2 56.4
O22 C22 C12 N9Y 277.6 261.4
O22 C22 C12 O42 161.8 142.7
O22 C22 C12 H12 37.1 23.8
C32 C22 O22 H22 238.5 237.3
O22 C22 C32 C42 197.7 241.4
O22 C22 C32 H32 75.9 122.6
C32 C22 C12 N9Y 152.9 142.8
C32 C22 C12 O42 37.1 24.0
C32 C22 C12 H12 272.4 265.1
O22 C22 C32 H22 113.6 122.7
O32 C32 C22 C42 120.6 118.6
O32 C32 C22 H32 242.4 237.4
C42 C32 C22 H32 121.9 118.7
C22 C32 C42 C52 272.4 217.2
C22 C32 C42 H42 152.6 94.9
H22 C22 C12 N9Y 31.2 24.1
H22 C22 C12 O42 275.4 265.3
H22 C22 C12 H12 150.7 146.5
O22 C22 H22 C32 235.9 237.3
H22 C22 C32 C42 84.2 118.7
H22 C22 C32 H32 322.3 359.9
HO22 O22 C22 C32 294.7 294.6
HO22 O22 C22 H22 56.2 57.3
HO2B O2B PB O3A 125.0 300.0
HO2E O2E PE O3D 114.8 300.0
N3Y C2Y N1Y C6Y 358.6 0.0
C2Y N3Y C4Y N9Y 180.9 180.0
C2Y N3Y C4Y C5Y 2.7 360.0
H2Y C2Y N1Y C6Y 178.6 180.0
H2Y C2Y N3Y C4Y 179.8 180.0
C41 C31 C21 H21 84.1 97.4
O31 C31 C41 H31 117.6 122.5
C41 C31 O31 HO31 296.6 176.2
O31 C31 C21 H21 204.7 216.0
C41 C31 O31 H31 238.1 237.4
H31 C31 C21 H21 322.3 338.6
H31 C31 O31 HO31 58.5 298.9
HO31 O31 C31 H31 58.5 298.9
O32 C32 C22 H22 204.7 237.3
C22 C32 O32 C42 243.4 245.4
C22 C32 O32 H32 121.5 122.7
C42 C32 O32 H32 238.1 237.3
O32 C32 C42 C52 151.4 98.6
O32 C32 C42 H42 31.6 336.3
C12 O42 C42 C32 356.4 40.5
C42 C32 C22 H22 84.2 118.7
C22 C32 C42 H32 238.6 241.3
O32 C32 C42 H32 117.6 122.7
O42 C42 C32 C52 115.0 118.8
O42 C42 C32 H42 234.9 241.1
C52 C42 C32 H42 119.9 122.3
C32 C42 C52 H52 50.7 304.9
C32 C42 C52 H52A 170.7 65.0
H32 C32 C22 H22 322.3 359.9
C22 C32 H32 C42 117.2 114.7
O32 C32 H32 C42 238.8 237.3
H32 C32 C42 C52 33.9 335.9
H32 C32 C42 H42 274.0 213.6
HO32 O32 C32 C42 296.6 176.1
HO32 O32 C32 H32 58.5 298.8
C12 N9Y C4Y N3Y 359.3 360.0
C4Y N3Y C2Y H2Y 179.8 180.0
C5Y C4Y N3Y N9Y 181.8 180.0
N3Y C4Y N9Y C8Y 180.8 180.0
N3Y C4Y C5Y N7Y 180.6 180.0
PA O51 C51 C41 174.7 180.0
C51 C41 C31 H31 33.9 357.3
O41 C41 C51 H41 125.6 121.0
C41 O41 C11 H11 98.3 78.7
O41 C41 C31 H31 148.9 116.9
C51 C41 O41 H41 240.6 238.9
H41 C41 C31 H31 274.0 236.1
C42 O42 C12 N9Y 217.4 200.7
C42 O42 C12 H12 98.3 78.4
O42 C42 C32 H32 148.9 94.7
C32 C42 O42 C52 241.4 241.2
C32 C42 O42 H42 121.9 118.9
C52 C42 O42 H42 240.6 237.7
O42 C42 C52 H52 299.2 189.6
O42 C42 C52 H52A 59.2 309.6
C52 C42 C32 H32 33.9 335.9
C32 C42 C52 H42 237.1 237.7
O42 C42 C52 H42 125.6 122.3
O52 C52 C42 H52 240.0 240.1
O52 C52 C42 H52A 120.0 120.0
H52 C52 C42 H52A 240.0 239.9
H42 C42 C32 H32 274.0 213.6
C32 C42 H42 C52 123.4 122.3
O42 C42 H42 C52 240.0 237.7
H42 C42 C52 H52 173.6 67.2
H42 C42 C52 H52A 293.6 187.3
C4Y N9Y C12 H12 341.2 325.8
C12 N9Y C4Y C8Y 178.5 180.0
N3Y C4Y N9Y C5Y 181.6 180.0
N9Y C4Y C5Y N7Y 2.0 0.0
C4Y N9Y C8Y H8Y 179.2 180.0
C12 N9Y C4Y C5Y 177.7 180.0
N1Y C6Y C5Y C4Y 1.7 0.0
N3Y C4Y C5Y N9Y 178.6 180.0
C5Y C4Y N9Y C8Y 359.2 360.0
C6Y C5Y C4Y N7Y 176.0 180.0
O51 C51 C41 H41 53.6 306.1
H51 C51 O51 H51A 120.0 120.0
H51 C51 C41 H41 173.7 66.1
O51 C51 H51 H51A 238.4 240.0
H51A C51 C41 H41 293.6 186.1
O51 C51 H51A H51 121.6 120.0
O52 C52 C42 H42 53.6 307.3
C42 C52 O52 H52 120.0 119.9
C42 C52 O52 H52A 240.0 239.9
H52 C52 O52 H52A 120.0 120.0
H52 C52 C42 H42 173.6 67.2
C42 C52 H52 H52A 121.6 120.1
O52 C52 H52 H52A 238.4 240.0
H52A C52 C42 H42 293.6 187.3
C42 C52 H52A H52 238.4 240.0
O52 C52 H52A H52 121.6 119.9
N1Y C6Y C5Y N6Y 179.3 180.0
C6Y C5Y C4Y N9Y 178.0 180.0
C4Y C5Y C6Y N7Y 185.3 180.1
N7Y C5Y C4Y N9Y 2.0 0.0
N1Y C6Y N6Y C5Y 180.7 180.0
N6Y C6Y C5Y N7Y 357.1 360.0
HN6Y N6Y C6Y HN6B 240.0 180.0
C6Y N6Y HN6Y HN6B 120.0 180.0
C6Y N6Y HN6B HN6Y 240.0 180.0
C12 N9Y C8Y N7Y 180.8 180.0
C4Y N9Y C8Y N7Y 359.2 0.0
C8Y N9Y C12 H12 159.4 145.8
C12 N9Y C8Y C4Y 181.6 180.0