PDB Chemical Component B67
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B67
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
F1 |
C7 |
1.330 |
1.400 |
C7 |
F2 |
1.330 |
1.399 |
C7 |
F3 |
1.330 |
1.399 |
C7 |
C4 |
1.540 |
1.507 |
C4 |
C5 |
1.395 |
1.381 |
C4 |
C3 |
1.397 |
1.383 |
C5 |
C6 |
1.393 |
1.389 |
C5 |
H5 |
1.079 |
1.080 |
C3 |
N8 |
1.332 |
1.480 |
C3 |
C2 |
1.391 |
1.383 |
N8 |
O2 |
1.420 |
1.218 |
O1 |
N8 |
1.420 |
1.217 |
C2 |
C1 |
1.390 |
1.382 |
C2 |
H2 |
1.080 |
1.080 |
C1 |
C6 |
1.391 |
1.388 |
C1 |
H1 |
1.080 |
1.080 |
C6 |
N9 |
1.331 |
1.399 |
N9 |
C10 |
1.332 |
1.347 |
N9 |
HN9 |
1.000 |
0.970 |
C10 |
O10 |
1.230 |
1.213 |
C10 |
C11 |
1.531 |
1.507 |
C11 |
O11 |
1.430 |
1.430 |
C11 |
C12 |
1.530 |
1.530 |
C11 |
C13 |
1.521 |
1.531 |
O11 |
HO11 |
0.950 |
0.967 |
C12 |
H12 |
1.100 |
1.091 |
C12 |
H12A |
1.100 |
1.089 |
C12 |
H12B |
1.100 |
1.090 |
C13 |
O14 |
1.439 |
1.429 |
C13 |
H13 |
1.100 |
1.090 |
C13 |
H13A |
1.100 |
1.090 |
O14 |
C16 |
1.364 |
1.361 |
C16 |
C17 |
1.393 |
1.387 |
C16 |
C21 |
1.391 |
1.389 |
C17 |
F17 |
1.350 |
1.350 |
C17 |
C18 |
1.396 |
1.386 |
C18 |
F18 |
1.353 |
1.351 |
C18 |
C19 |
1.396 |
1.386 |
C19 |
F19 |
1.352 |
1.350 |
C19 |
C20 |
1.399 |
1.386 |
C20 |
F20 |
1.351 |
1.351 |
C20 |
C21 |
1.396 |
1.385 |
C21 |
F21 |
1.351 |
1.351 |
Bond Angles for B67
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
F1 |
C7 |
F2 |
106.8 |
109.4 |
F1 |
C7 |
F3 |
105.9 |
109.5 |
F1 |
C7 |
C4 |
111.4 |
109.5 |
F2 |
C7 |
F3 |
109.7 |
109.5 |
F2 |
C7 |
C4 |
110.5 |
109.5 |
F3 |
C7 |
C4 |
112.3 |
109.5 |
C7 |
C4 |
C5 |
118.7 |
120.0 |
C7 |
C4 |
C3 |
123.7 |
119.9 |
C5 |
C4 |
C3 |
117.5 |
120.1 |
C4 |
C5 |
C6 |
123.1 |
119.9 |
C4 |
C5 |
H5 |
118.5 |
120.0 |
C4 |
C3 |
N8 |
123.8 |
119.9 |
C4 |
C3 |
C2 |
119.8 |
120.1 |
C6 |
C5 |
H5 |
118.4 |
120.1 |
C5 |
C6 |
C1 |
118.5 |
119.9 |
C5 |
C6 |
N9 |
122.7 |
120.0 |
N8 |
C3 |
C2 |
115.7 |
119.9 |
C3 |
N8 |
O2 |
118.5 |
120.0 |
C3 |
C2 |
C1 |
121.9 |
120.1 |
C3 |
C2 |
H2 |
119.1 |
120.0 |
C1 |
C2 |
H2 |
119.1 |
119.9 |
C2 |
C1 |
C6 |
119.1 |
119.9 |
C2 |
C1 |
H1 |
120.4 |
120.1 |
C6 |
C1 |
H1 |
120.4 |
120.0 |
C1 |
C6 |
N9 |
118.7 |
120.1 |
C6 |
N9 |
C10 |
124.7 |
120.0 |
C6 |
N9 |
HN9 |
117.6 |
120.0 |
C10 |
N9 |
HN9 |
117.6 |
120.0 |
N9 |
C10 |
O10 |
124.9 |
120.1 |
N9 |
C10 |
C11 |
114.6 |
120.0 |
O10 |
C10 |
C11 |
120.6 |
120.0 |
C10 |
C11 |
O11 |
109.5 |
109.5 |
C10 |
C11 |
C12 |
110.0 |
109.5 |
C10 |
C11 |
C13 |
108.1 |
109.5 |
O11 |
C11 |
C12 |
110.2 |
109.5 |
O11 |
C11 |
C13 |
109.9 |
109.5 |
C11 |
O11 |
HO11 |
109.5 |
114.0 |
C12 |
C11 |
C13 |
109.1 |
109.4 |
C11 |
C12 |
H12 |
109.5 |
109.4 |
C11 |
C12 |
H12A |
109.5 |
109.5 |
C11 |
C12 |
H12B |
109.4 |
109.5 |
C11 |
C13 |
O14 |
113.0 |
109.5 |
C11 |
C13 |
H13 |
108.3 |
109.4 |
C11 |
C13 |
H13A |
107.6 |
109.4 |
H12 |
C12 |
H12A |
109.5 |
109.5 |
H12 |
C12 |
H12B |
109.4 |
109.4 |
H12A |
C12 |
H12B |
109.5 |
109.5 |
O14 |
C13 |
H13 |
108.3 |
109.5 |
O14 |
C13 |
H13A |
107.5 |
109.5 |
C13 |
O14 |
C16 |
112.2 |
117.0 |
H13 |
C13 |
H13A |
112.2 |
109.5 |
O14 |
C16 |
C17 |
120.2 |
120.0 |
O14 |
C16 |
C21 |
119.9 |
120.0 |
C17 |
C16 |
C21 |
119.8 |
120.0 |
C16 |
C17 |
F17 |
118.1 |
120.0 |
C16 |
C17 |
C18 |
120.3 |
120.0 |
C16 |
C21 |
C20 |
120.4 |
120.0 |
C16 |
C21 |
F21 |
117.5 |
120.0 |
F17 |
C17 |
C18 |
121.6 |
120.0 |
C17 |
C18 |
F18 |
119.8 |
120.0 |
C17 |
C18 |
C19 |
119.7 |
120.0 |
F18 |
C18 |
C19 |
120.5 |
120.0 |
C18 |
C19 |
F19 |
120.0 |
120.0 |
C18 |
C19 |
C20 |
120.2 |
120.0 |
F19 |
C19 |
C20 |
119.8 |
120.0 |
C19 |
C20 |
F20 |
120.4 |
120.0 |
C19 |
C20 |
C21 |
119.6 |
120.0 |
F20 |
C20 |
C21 |
119.9 |
120.0 |
C20 |
C21 |
F21 |
122.0 |
120.0 |
Torsion Angles for B67
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
F2 |
C7 |
F1 |
F3 |
116.9 |
240.0 |
F2 |
C7 |
F1 |
C4 |
239.3 |
120.0 |
F3 |
C7 |
F1 |
C4 |
122.4 |
240.0 |
F1 |
C7 |
C4 |
C5 |
344.1 |
0.0 |
F1 |
C7 |
C4 |
C3 |
160.3 |
179.7 |
F1 |
C7 |
F2 |
F3 |
245.6 |
120.0 |
F1 |
C7 |
F2 |
C4 |
121.3 |
240.0 |
F3 |
C7 |
F2 |
C4 |
235.7 |
120.0 |
F2 |
C7 |
C4 |
C5 |
102.7 |
240.1 |
F2 |
C7 |
C4 |
C3 |
278.8 |
59.7 |
F1 |
C7 |
F3 |
F2 |
115.0 |
240.0 |
F1 |
C7 |
F3 |
C4 |
238.2 |
120.0 |
F2 |
C7 |
F3 |
C4 |
123.2 |
240.0 |
F3 |
C7 |
C4 |
C5 |
225.5 |
120.0 |
F3 |
C7 |
C4 |
C3 |
41.7 |
299.7 |
F1 |
C7 |
C4 |
F2 |
241.4 |
120.0 |
F1 |
C7 |
C4 |
F3 |
118.6 |
240.0 |
F2 |
C7 |
C4 |
F3 |
237.2 |
120.0 |
C5 |
C4 |
C7 |
C3 |
183.9 |
180.3 |
C7 |
C4 |
C5 |
C6 |
175.8 |
180.0 |
C7 |
C4 |
C5 |
H5 |
355.8 |
359.9 |
C7 |
C4 |
C3 |
N8 |
15.3 |
0.1 |
C7 |
C4 |
C3 |
C2 |
185.4 |
180.0 |
C7 |
C4 |
C5 |
C3 |
176.4 |
179.7 |
C5 |
C4 |
C3 |
N8 |
191.4 |
179.7 |
C5 |
C4 |
C3 |
C2 |
1.6 |
359.6 |
C6 |
C5 |
C4 |
H5 |
180.0 |
180.1 |
C4 |
C5 |
C6 |
C1 |
359.4 |
359.9 |
C4 |
C5 |
C6 |
N9 |
175.9 |
180.0 |
C7 |
C4 |
C3 |
C5 |
183.8 |
180.3 |
C3 |
C4 |
C5 |
C6 |
359.4 |
0.3 |
C3 |
C4 |
C5 |
H5 |
179.4 |
180.2 |
N8 |
C3 |
C4 |
C2 |
189.9 |
180.1 |
C4 |
C3 |
N8 |
O2 |
185.7 |
179.9 |
C4 |
C3 |
C2 |
C1 |
358.6 |
0.1 |
C4 |
C3 |
C2 |
H2 |
178.6 |
180.0 |
C6 |
C5 |
C4 |
C3 |
359.4 |
0.3 |
C4 |
C5 |
C6 |
H5 |
180.0 |
179.9 |
C2 |
C1 |
C6 |
C5 |
0.8 |
359.8 |
C5 |
C6 |
C1 |
H1 |
180.9 |
180.0 |
C1 |
C6 |
C5 |
N9 |
183.5 |
180.0 |
C5 |
C6 |
N9 |
C10 |
0.4 |
144.9 |
C5 |
C6 |
N9 |
HN9 |
180.5 |
324.9 |
H5 |
C5 |
C4 |
C3 |
179.4 |
180.2 |
C4 |
C5 |
H5 |
C6 |
180.0 |
180.1 |
H5 |
C5 |
C6 |
C1 |
179.4 |
180.0 |
H5 |
C5 |
C6 |
N9 |
355.9 |
0.0 |
C4 |
C3 |
N8 |
C2 |
170.5 |
179.9 |
N8 |
C3 |
C2 |
C1 |
169.5 |
180.1 |
N8 |
C3 |
C2 |
H2 |
349.5 |
359.9 |
C4 |
C3 |
C2 |
N8 |
189.1 |
180.1 |
C2 |
C3 |
N8 |
O2 |
15.2 |
0.0 |
C1 |
C2 |
C3 |
H2 |
180.0 |
180.1 |
C3 |
C2 |
C1 |
C6 |
0.1 |
0.1 |
C3 |
C2 |
C1 |
H1 |
180.1 |
179.9 |
O2 |
N8 |
C3 |
C2 |
15.2 |
0.0 |
O1 |
N8 |
C3 |
C2 |
191.7 |
180.1 |
C5 |
C6 |
C1 |
C2 |
0.8 |
359.8 |
C3 |
C2 |
C1 |
H2 |
180.0 |
179.9 |
C6 |
C1 |
C2 |
H1 |
180.0 |
180.2 |
C2 |
C1 |
C6 |
N9 |
184.2 |
179.8 |
C3 |
C2 |
H2 |
C1 |
180.0 |
180.1 |
H2 |
C2 |
C1 |
C6 |
180.1 |
180.2 |
H2 |
C2 |
C1 |
H1 |
0.1 |
0.0 |
C1 |
C6 |
C5 |
H5 |
179.4 |
180.0 |
C5 |
C6 |
C1 |
N9 |
176.7 |
180.0 |
C6 |
C1 |
C2 |
H2 |
180.1 |
180.2 |
C2 |
C1 |
C6 |
H1 |
180.0 |
179.8 |
C1 |
C6 |
N9 |
C10 |
177.0 |
324.9 |
C1 |
C6 |
N9 |
HN9 |
357.0 |
144.9 |
H1 |
C1 |
C2 |
H2 |
0.1 |
0.0 |
C2 |
C1 |
H1 |
C6 |
180.0 |
180.2 |
H1 |
C1 |
C6 |
N9 |
4.2 |
0.0 |
N9 |
C6 |
C5 |
H5 |
355.9 |
0.0 |
C5 |
C6 |
N9 |
C1 |
183.5 |
180.0 |
N9 |
C6 |
C1 |
H1 |
4.2 |
0.0 |
C10 |
N9 |
C6 |
HN9 |
180.0 |
180.1 |
C6 |
N9 |
C10 |
O10 |
0.8 |
4.7 |
C6 |
N9 |
C10 |
C11 |
181.4 |
184.6 |
C6 |
N9 |
C10 |
HN9 |
180.0 |
179.9 |
O10 |
C10 |
N9 |
C11 |
179.5 |
180.1 |
N9 |
C10 |
C11 |
O11 |
355.5 |
35.0 |
N9 |
C10 |
C11 |
C12 |
234.1 |
275.0 |
N9 |
C10 |
C11 |
C13 |
115.1 |
155.0 |
C6 |
N9 |
HN9 |
C10 |
180.0 |
180.1 |
HN9 |
N9 |
C10 |
O10 |
180.8 |
184.7 |
HN9 |
N9 |
C10 |
C11 |
1.4 |
4.6 |
O10 |
C10 |
N9 |
HN9 |
180.8 |
184.7 |
N9 |
C10 |
O10 |
C11 |
180.6 |
179.9 |
O10 |
C10 |
C11 |
O11 |
176.0 |
215.0 |
O10 |
C10 |
C11 |
C12 |
54.7 |
94.9 |
O10 |
C10 |
C11 |
C13 |
295.7 |
334.9 |
C11 |
C10 |
N9 |
HN9 |
1.4 |
4.6 |
N9 |
C10 |
C11 |
O10 |
179.5 |
180.1 |
O11 |
C11 |
C10 |
C12 |
121.3 |
120.0 |
O11 |
C11 |
C10 |
C13 |
240.3 |
240.0 |
C10 |
C11 |
O11 |
HO11 |
296.8 |
60.0 |
C12 |
C11 |
C10 |
C13 |
119.0 |
120.0 |
C10 |
C11 |
C12 |
H12 |
73.2 |
60.0 |
C10 |
C11 |
C12 |
H12A |
193.2 |
180.0 |
C10 |
C11 |
C12 |
H12B |
313.2 |
300.1 |
C10 |
C11 |
C13 |
O14 |
292.8 |
180.0 |
C10 |
C11 |
C13 |
H13 |
52.8 |
300.0 |
C10 |
C11 |
C13 |
H13A |
174.3 |
60.0 |
C10 |
C11 |
O11 |
C12 |
238.8 |
239.9 |
C10 |
C11 |
O11 |
C13 |
118.6 |
120.0 |
C12 |
C11 |
O11 |
C13 |
239.7 |
240.1 |
O11 |
C11 |
C12 |
H12 |
312.3 |
300.0 |
O11 |
C11 |
C12 |
H12A |
72.3 |
60.0 |
O11 |
C11 |
C12 |
H12B |
192.4 |
180.0 |
O11 |
C11 |
C13 |
O14 |
52.2 |
300.0 |
O11 |
C11 |
C13 |
H13 |
172.2 |
60.0 |
O11 |
C11 |
C13 |
H13A |
293.7 |
180.0 |
C10 |
C11 |
C12 |
O11 |
120.9 |
120.0 |
C10 |
C11 |
C12 |
C13 |
241.6 |
240.0 |
O11 |
C11 |
C12 |
C13 |
120.8 |
119.9 |
C12 |
C11 |
O11 |
HO11 |
57.9 |
180.0 |
C12 |
C11 |
C13 |
O14 |
173.2 |
60.0 |
C12 |
C11 |
C13 |
H13 |
293.2 |
179.9 |
C12 |
C11 |
C13 |
H13A |
54.7 |
299.9 |
H12 |
C12 |
C11 |
H12A |
240.0 |
240.0 |
H12 |
C12 |
C11 |
H12B |
120.0 |
119.9 |
H12A |
C12 |
C11 |
H12B |
240.0 |
239.9 |
C10 |
C11 |
C13 |
O11 |
240.6 |
240.0 |
C10 |
C11 |
C13 |
C12 |
119.6 |
120.0 |
O11 |
C11 |
C13 |
C12 |
239.0 |
240.1 |
C13 |
C11 |
O11 |
HO11 |
178.2 |
299.9 |
C13 |
C11 |
C12 |
H12 |
191.5 |
180.0 |
C13 |
C11 |
C12 |
H12A |
311.6 |
300.0 |
C13 |
C11 |
C12 |
H12B |
71.6 |
60.1 |
O14 |
C13 |
C11 |
H13 |
240.0 |
240.0 |
O14 |
C13 |
C11 |
H13A |
118.5 |
120.0 |
C11 |
C13 |
O14 |
C16 |
131.2 |
180.0 |
H13 |
C13 |
C11 |
H13A |
238.5 |
240.0 |
HO11 |
O11 |
C11 |
C12 |
57.9 |
180.0 |
HO11 |
O11 |
C11 |
C13 |
178.2 |
299.9 |
H12 |
C12 |
C11 |
C13 |
191.5 |
180.0 |
C11 |
C12 |
H12 |
H12A |
120.0 |
120.1 |
C11 |
C12 |
H12 |
H12B |
240.0 |
240.0 |
H12A |
C12 |
H12 |
H12B |
120.0 |
120.0 |
H12A |
C12 |
C11 |
C13 |
311.6 |
300.0 |
C11 |
C12 |
H12A |
H12 |
240.0 |
240.0 |
C11 |
C12 |
H12A |
H12B |
120.0 |
120.0 |
H12 |
C12 |
H12A |
H12B |
240.0 |
240.1 |
H12B |
C12 |
C11 |
C13 |
71.6 |
60.1 |
C11 |
C12 |
H12B |
H12 |
120.0 |
119.9 |
C11 |
C12 |
H12B |
H12A |
240.0 |
239.9 |
H12 |
C12 |
H12B |
H12A |
120.0 |
120.0 |
C11 |
C13 |
O14 |
H13 |
120.0 |
120.0 |
C11 |
C13 |
O14 |
H13A |
241.5 |
240.0 |
H13 |
C13 |
O14 |
H13A |
121.5 |
120.1 |
C13 |
O14 |
C16 |
C17 |
252.8 |
90.0 |
C13 |
O14 |
C16 |
C21 |
74.5 |
269.8 |
C11 |
C13 |
H13 |
O14 |
237.2 |
240.0 |
C11 |
C13 |
H13 |
H13A |
118.6 |
119.9 |
O14 |
C13 |
H13 |
H13A |
241.4 |
239.9 |
H13 |
C13 |
O14 |
C16 |
11.2 |
60.0 |
C11 |
C13 |
H13A |
O14 |
121.9 |
120.0 |
C11 |
C13 |
H13A |
H13 |
241.0 |
240.1 |
O14 |
C13 |
H13A |
H13 |
119.0 |
120.1 |
H13A |
C13 |
O14 |
C16 |
249.7 |
300.0 |
C16 |
O14 |
C13 |
H13 |
11.2 |
60.0 |
C16 |
O14 |
C13 |
H13A |
249.7 |
300.0 |
C17 |
C16 |
O14 |
C21 |
178.2 |
180.2 |
O14 |
C16 |
C17 |
F17 |
1.2 |
0.0 |
O14 |
C16 |
C17 |
C18 |
181.4 |
180.0 |
O14 |
C16 |
C21 |
C20 |
179.7 |
179.8 |
O14 |
C16 |
C21 |
F21 |
2.0 |
360.0 |
O14 |
C16 |
C17 |
C21 |
181.8 |
179.8 |
C17 |
C16 |
C21 |
C20 |
1.5 |
359.5 |
C17 |
C16 |
C21 |
F21 |
183.8 |
179.7 |
F17 |
C17 |
C16 |
C18 |
179.8 |
180.0 |
C16 |
C17 |
C18 |
F18 |
177.0 |
180.0 |
C16 |
C17 |
C18 |
C19 |
359.1 |
360.0 |
O14 |
C16 |
C21 |
C17 |
178.2 |
180.2 |
C21 |
C16 |
C17 |
F17 |
179.5 |
180.3 |
C21 |
C16 |
C17 |
C18 |
359.7 |
0.2 |
C19 |
C20 |
C21 |
C16 |
358.7 |
0.5 |
F20 |
C20 |
C21 |
C16 |
176.2 |
180.2 |
C20 |
C21 |
C16 |
F21 |
177.7 |
179.8 |
F17 |
C17 |
C16 |
C21 |
179.5 |
180.3 |
C16 |
C17 |
F17 |
C18 |
180.2 |
180.0 |
F17 |
C17 |
C18 |
F18 |
357.2 |
360.0 |
F17 |
C17 |
C18 |
C19 |
179.3 |
180.0 |
C18 |
C17 |
C16 |
C21 |
359.7 |
0.2 |
C16 |
C17 |
C18 |
F17 |
179.8 |
180.0 |
F18 |
C18 |
C17 |
C19 |
178.0 |
180.0 |
C17 |
C18 |
C19 |
F19 |
183.1 |
180.0 |
C17 |
C18 |
C19 |
C20 |
1.1 |
0.0 |
C17 |
C18 |
F18 |
C19 |
182.0 |
180.0 |
F18 |
C18 |
C19 |
F19 |
5.2 |
0.0 |
F18 |
C18 |
C19 |
C20 |
183.1 |
180.0 |
C17 |
C18 |
C19 |
F18 |
178.0 |
180.0 |
F19 |
C19 |
C18 |
C20 |
182.1 |
180.0 |
C18 |
C19 |
C20 |
F20 |
182.5 |
180.0 |
C18 |
C19 |
C20 |
C21 |
0.0 |
359.7 |
C18 |
C19 |
F19 |
C20 |
178.0 |
180.0 |
F19 |
C19 |
C20 |
F20 |
0.5 |
0.0 |
F19 |
C19 |
C20 |
C21 |
178.0 |
179.7 |
C16 |
C21 |
C20 |
C19 |
358.7 |
0.5 |
C18 |
C19 |
C20 |
F19 |
182.1 |
180.0 |
F20 |
C20 |
C19 |
C21 |
182.5 |
180.3 |
C19 |
C20 |
C21 |
F21 |
176.3 |
180.3 |
C16 |
C21 |
C20 |
F20 |
176.2 |
180.2 |
C19 |
C20 |
F20 |
C21 |
177.5 |
179.7 |
F20 |
C20 |
C21 |
F21 |
353.8 |
0.0 |
C16 |
C21 |
C20 |
F21 |
182.4 |
180.2 |
C19 |
C20 |
C21 |
F20 |
182.5 |
180.3 |
C16 |
C21 |
F21 |
C20 |
177.6 |
179.8 |