PDB Chemical Component B5P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B5P

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.537	1.530
C2	C3	1.553	1.531
C2	C4	1.512	1.530
C5	C4	1.562	1.530
C5	N1	1.464	1.465
C6	C7	1.493	1.464
C6	O1	1.288	1.217
C7	C12	1.453	1.473
N1	C6	1.432	1.348
N2	C8	1.340	1.372
C8	O2	1.315	1.348
C8	C7	1.530	1.388
N3	C11	1.361	1.315
C9	N2	1.339	1.379
C10	N3	1.353	1.343
C10	C9	1.369	1.344
C11	N2	1.340	1.365
C11	N1	1.356	1.382
C12	N4	1.331	1.297
C12	N5	1.359	1.364
C13	C19	1.411	1.377
C14	C15	1.429	1.388
C14	C13	1.490	1.391
C15	C16	1.385	1.381
S2	C18	1.684	1.814
S2	O6	1.458	1.421
O5	S2	1.433	1.421
N6	S2	1.611	1.656
C17	N6	1.361	1.399
C19	C17	1.418	1.391
S1	O3	1.423	1.421
S1	O4	1.435	1.422
S1	C13	1.641	1.763
N4	S1	1.620	1.658
C16	C17	1.419	1.388
N5	C14	1.338	1.395
C1	H11	1.100	1.090
C1	H21	1.100	1.090
C1	H31	1.100	1.090
C2	H2	1.100	1.090
C3	H13	1.100	1.090
C3	H23	1.101	1.090
C3	H33	1.100	1.090
C4	H14	1.100	1.090
C4	H24	1.101	1.090
C5	H15	1.100	1.090
C5	H25	1.100	1.090
O2	H12	0.950	0.967
C9	H9	1.080	1.080
C10	H10	1.080	1.080
C15	H15A	1.080	1.080
C18	H118	1.100	1.091
C18	H218	1.101	1.090
C18	H318	1.100	1.090
N6	HN6	1.000	0.970
C19	H19	1.080	1.081
C16	H16	1.080	1.080
N5	H22	1.000	0.970

Bond Angles for B5P

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C2	C3	109.3	109.5
C1	C2	C4	107.5	109.5
C2	C1	H11	109.5	109.5
C2	C1	H21	109.4	109.5
C2	C1	H31	109.5	109.5
C1	C2	H2	114.1	109.5
C3	C2	C4	117.4	109.4
C3	C2	H2	103.4	109.4
C2	C3	H13	109.5	109.4
C2	C3	H23	109.5	109.5
C2	C3	H33	109.4	109.4
C4	C2	H2	105.4	109.5
C2	C4	H14	109.3	109.5
C2	C4	H24	109.2	109.5
C5	C4	H14	109.3	109.5
C5	C4	H24	109.2	109.5
C5	N1	C6	117.7	119.7
N1	C5	H15	108.9	109.4
N1	C5	H25	108.6	109.5
C7	C6	O1	122.5	120.5
C6	C7	C12	120.3	120.7
N1	C6	O1	122.3	120.4
C8	C7	C12	120.7	120.7
C7	C12	N4	119.5	117.3
C7	C12	N5	116.5	117.3
N2	C8	O2	117.0	120.2
C8	O2	H12	109.5	117.0
C10	N3	C11	106.0	109.5
C10	C9	H9	126.7	126.6
N4	C12	N5	120.3	125.5
C12	N4	S1	122.2	120.9
C12	N5	C14	128.9	124.4
C12	N5	H22	115.6	117.8
C14	C13	C19	116.2	120.6
C13	C19	C17	119.6	119.8
C13	C19	H19	120.2	120.1
C14	C15	C16	119.4	120.0
C14	C15	H15A	120.3	120.0
C15	C16	C17	118.9	120.2
C16	C15	H15A	120.3	119.9
C15	C16	H16	120.6	119.9
O5	S2	C18	108.5	110.6
S2	C18	H118	109.5	109.5
S2	C18	H218	109.5	109.5
S2	C18	H318	109.5	109.5
C17	N6	HN6	104.2	120.0
O4	S1	O3	109.5	123.3
H11	C1	H21	109.5	109.5
H11	C1	H31	109.5	109.4
H21	C1	H31	109.5	109.5
H13	C3	H23	109.5	109.5
H13	C3	H33	109.4	109.5
H23	C3	H33	109.5	109.5
H14	C4	H24	109.8	109.5
H15	C5	H25	110.8	109.5
H118	C18	H218	109.5	109.5
H118	C18	H318	109.4	109.5
H218	C18	H318	109.5	109.5

Torsion Angles for B5P

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C2	C1	C4	128.4	240.0
C3	C2	C1	H2	244.8	120.0
C1	C2	C3	H13	193.6	60.0
C1	C2	C3	H23	313.6	180.0
C1	C2	C3	H33	73.7	300.0
C4	C2	C1	H2	116.4	240.0
C1	C2	C4	H14	58.3	185.0
C1	C2	C4	H24	178.5	305.0
H11	C1	C2	H21	240.0	239.9
H11	C1	C2	H31	120.0	119.9
H21	C1	C2	H31	240.0	240.0
C1	C2	C3	C4	237.4	120.0
C3	C2	C1	H11	105.3	180.0
C3	C2	C1	H21	225.3	300.0
C3	C2	C1	H31	345.3	60.0
C1	C2	C3	H2	121.9	240.0
C4	C2	C3	H2	244.5	120.0
C3	C2	C4	H14	294.8	305.0
C3	C2	C4	H24	55.0	65.0
H13	C3	C2	H23	240.0	240.0
H13	C3	C2	H33	120.0	120.0
H23	C3	C2	H33	240.0	240.0
C1	C2	C4	C3	123.6	240.0
C4	C2	C1	H11	336.9	299.9
C4	C2	C1	H21	96.9	60.0
C4	C2	C1	H31	216.9	180.0
C1	C2	C4	H2	237.9	120.0
C3	C2	C4	H2	114.4	240.0
C4	C2	C3	H13	316.3	300.0
C4	C2	C3	H23	76.3	60.0
C4	C2	C3	H33	196.3	180.0
C5	C4	C2	H14	240.0	240.0
C5	C4	C2	H24	119.8	120.0
H14	C4	C2	H24	239.8	240.0
C5	C4	C2	H2	60.4	305.0
C2	C4	C5	H14	120.0	120.0
C2	C4	C5	H24	240.2	240.0
H14	C4	C5	H24	120.2	120.1
N1	C5	C4	H14	170.3	60.0
N1	C5	C4	H24	50.1	300.0
C5	N1	C6	O1	358.3	0.3
H15	C5	N1	H25	120.7	120.0
C5	N1	C6	C7	175.7	180.0
N1	C6	C7	O1	182.6	180.2
C8	C7	C6	C12	199.8	180.0
C6	C7	C12	N4	197.8	186.2
C6	C7	C12	N5	356.4	5.8
O1	C6	C7	C12	345.5	0.0
C12	C7	C6	O1	345.5	0.0
N4	C12	C7	N5	201.4	180.3
C7	C12	N4	S1	177.2	179.5
C7	C12	N5	C14	191.1	200.2
C7	C12	N5	H22	11.1	20.1
C6	N1	C5	H15	173.4	330.0
C6	N1	C5	H25	52.7	210.0
C7	C6	N1	O1	177.4	179.8
N1	C6	C7	C12	168.1	180.3
N2	C8	C7	C12	190.9	180.0
N2	C8	O2	H12	340.4	360.0
O2	C8	C7	C12	17.0	359.4
C6	C7	C8	C12	160.1	180.0
C8	C7	C12	N4	357.0	6.2
C8	C7	C12	N5	155.6	185.9
C9	C10	N3	C11	358.8	359.9
C11	N1	C5	H15	354.1	150.0
C11	N1	C5	H25	233.4	30.0
C7	C12	N4	N5	157.8	179.7
N4	C12	N5	C14	349.5	19.8
N4	C12	N5	H22	169.5	199.8
C7	C12	N5	N4	201.6	180.3
N5	C12	N4	S1	19.4	359.9
C12	N5	C14	C15	181.5	161.1
C15	C14	C13	C19	1.1	0.2
C14	C15	C16	C17	359.9	0.1
C16	C15	C14	H15A	180.0	180.0
C14	C15	C16	H16	179.9	180.0
C12	N5	C14	C13	3.2	340.9
C14	C13	C19	C17	0.1	359.9
C14	C13	C19	H19	180.2	179.8
C14	C15	C16	H15A	180.0	180.0
H118	C18	S2	H218	240.0	240.0
H118	C18	S2	H318	120.0	120.0
H218	C18	S2	H318	240.0	240.0
O5	S2	C18	H118	77.8	193.5
O5	S2	C18	H218	197.8	313.5
O5	S2	C18	H318	317.9	73.5
N6	S2	C18	H118	315.9	305.1
N6	S2	C18	H218	75.9	65.1
N6	S2	C18	H318	196.0	185.1
C13	C19	C17	N6	180.6	179.9
C15	C16	C17	N6	179.5	180.1
C13	C19	C17	H19	180.0	180.0
C15	C16	C17	C19	1.4	360.0
C19	C17	N6	HN6	217.1	313.3
C12	N4	S1	O3	215.9	232.1
C12	N4	S1	O4	100.0	98.6
C12	N4	S1	C13	340.4	345.4
S1	C13	C19	H19	5.1	359.5
S1	N4	C12	N5	19.4	359.9
C17	C16	C15	H15A	179.9	180.0
C15	C16	C17	H16	180.0	179.9
C16	C17	N6	HN6	39.0	133.2
C12	N5	C14	H22	180.0	180.0
N5	C14	C15	H15A	0.6	359.7
H11	C1	C2	C3	105.3	180.0
H11	C1	C2	C4	336.9	299.9
C2	C1	H11	H21	120.0	120.1
C2	C1	H11	H31	240.0	240.0
H11	C1	C2	H2	220.5	60.0
H21	C1	H11	H31	120.0	120.0
H21	C1	C2	C3	225.3	300.0
H21	C1	C2	C4	96.9	60.0
C2	C1	H21	H11	240.0	240.0
C2	C1	H21	H31	120.0	120.0
H21	C1	C2	H2	340.4	180.0
H11	C1	H21	H31	240.0	240.1
H31	C1	C2	C3	345.3	60.0
H31	C1	C2	C4	216.9	180.0
C2	C1	H31	H11	120.0	120.0
C2	C1	H31	H21	240.0	239.9
H31	C1	C2	H2	100.5	300.1
H11	C1	H31	H21	120.0	120.0
C1	C2	H2	C3	241.4	120.0
C1	C2	H2	C4	117.7	240.0
H2	C2	C1	H11	220.5	60.0
H2	C2	C1	H21	340.4	180.0
H2	C2	C1	H31	100.5	300.1
C3	C2	H2	C4	236.3	120.0
H2	C2	C3	H13	71.7	180.0
H2	C2	C3	H23	191.7	300.0
H2	C2	C3	H33	311.8	60.0
H2	C2	C4	H14	180.4	65.0
H2	C2	C4	H24	300.6	185.0
H13	C3	C2	C4	316.3	300.0
H13	C3	C2	H2	71.7	180.0
C2	C3	H13	H23	120.0	120.0
C2	C3	H13	H33	240.0	240.0
H23	C3	H13	H33	120.0	120.1
H23	C3	C2	C4	76.3	60.0
H23	C3	C2	H2	191.7	300.0
C2	C3	H23	H13	240.0	240.0
C2	C3	H23	H33	120.0	120.0
H13	C3	H23	H33	240.0	239.9
H33	C3	C2	C4	196.3	180.0
H33	C3	C2	H2	311.8	60.0
C2	C3	H33	H13	120.0	120.0
C2	C3	H33	H23	240.0	240.0
H13	C3	H33	H23	120.0	120.1
H14	C4	C2	H2	180.4	65.0
C2	C4	H14	H24	119.8	120.0
C5	C4	H14	H24	240.2	240.0
H24	C4	C2	H2	300.6	185.0
C2	C4	H24	H14	240.1	240.0
C5	C4	H24	H14	119.9	120.0
H15	C5	C4	H14	290.3	180.0
H15	C5	C4	H24	170.1	59.9
H15	C5	N1	C6	173.4	330.0
N1	C5	H15	H25	240.7	240.0
H25	C5	C4	H14	51.0	300.1
H25	C5	C4	H24	290.8	180.0
H25	C5	N1	C6	52.7	210.0
N1	C5	H25	H15	119.5	120.0
H10	C10	N3	C11	178.8	180.0
H10	C10	C9	H9	1.6	0.0
C14	C15	H15A	C16	180.0	180.0
H15A	C15	C16	C17	179.9	180.0
H15A	C15	C16	H16	359.9	360.0
S2	C18	H118	H218	120.0	120.0
S2	C18	H118	H318	240.0	240.0
H218	C18	H118	H318	120.0	120.0
S2	C18	H218	H118	240.0	240.0
S2	C18	H218	H318	120.0	120.0
H118	C18	H218	H318	240.0	240.0
S2	C18	H318	H118	120.0	120.0
S2	C18	H318	H218	240.0	240.0
H118	C18	H318	H218	120.0	120.0
C13	C19	H19	C17	180.0	180.0
C15	C16	H16	C17	180.0	180.1
H16	C16	C15	H15A	359.9	360.0
C12	N5	H22	C14	180.0	180.0