Atom Nomenclature for B4C

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for B4C

Atom Name (V3) Atom Name (V2)
C10 C10
C12 C12
C21 C21
C28 C28
C27 C27
C26 C26
C25 C25
C24 C24
C23 C23
C13 C13
C14 C14
C19 C19
C18 C18
C17 C17
C16 C16
C15 C15
C8 C8
C7 C7
C5 C5
C4 C4
C3 C3
C30 C30
C31 C31
C2 C2
C9 C9
C11 C11
O2 O2
C6 C6
O1 O1
N2 N2
C1 C1
N1 N1
O3 O3
N3 N3
C20 C20
C22 C22
O4 O4
N4 N4
C29 C29
O5 O5
O6 O6
C37 C37
C36 C36
C35 C35
C34 C34
C33 C33
C32 C32
N6 N6
N5 N5
H10 H10
H12 H12
H21 H21
H28 H28
H28A H28A
H27 H27
H27A H27A
H26 H26
H26A H26A
H25 H25
H23 H23
H13 H13
H19 H19
H17 H17
H17A H17A
H16 H16
H16A H16A
H15 H15
H7 H7
H7A H7A
H5 H5
H4 H4
H4A H4A
H3 H3
H3A H3A
H30 H30
H2 H2
H2A H2A
H9 H9
H11 H11
HN2 HN2
H1 H1
H1A H1A
HN1 HN1
HN1A HN1A
HN3 HN3
H20 H20
H22 H22
HN4 HN4
H29 H29
H29A H29A
HO5 HO5
H36 H36
H35 H35
H34 H34
H33 H33
HN5 HN5
HN5A HN5A