PDB Chemical Component B3Q
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B3Q
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
H |
1.000 |
1.009 |
| N |
H2 |
1.000 |
1.009 |
| CA |
N |
1.429 |
1.469 |
| CA |
CG |
1.530 |
1.531 |
| CG |
HG |
1.099 |
1.090 |
| CG |
HGA |
1.100 |
1.090 |
| CG |
CD |
1.540 |
1.530 |
| CB |
CA |
1.521 |
1.531 |
| CB |
HB1 |
1.100 |
1.090 |
| C |
CB |
1.529 |
1.507 |
| C |
OXT |
1.430 |
1.342 |
| O |
C |
1.219 |
1.208 |
| HA |
CA |
1.100 |
1.090 |
| HB2 |
CB |
1.100 |
1.090 |
| CD |
CE |
1.090 |
1.507 |
| CD |
H8 |
1.100 |
1.090 |
| CD |
H9 |
1.100 |
1.090 |
| OXT |
HXT |
0.950 |
0.967 |
| CE |
NF2 |
1.090 |
1.348 |
| CE |
OF1 |
1.430 |
1.214 |
| NF2 |
H11 |
1.000 |
0.970 |
| NF2 |
H12 |
1.000 |
0.970 |
Bond Angles for B3Q
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
H2 |
109.5 |
111.0 |
| CA |
N |
H |
109.5 |
111.0 |
| CA |
N |
H2 |
109.5 |
110.9 |
| CA |
CG |
HG |
109.4 |
109.5 |
| CA |
CG |
HGA |
109.4 |
109.4 |
| CA |
CG |
CD |
109.7 |
109.4 |
| HG |
CG |
HGA |
109.6 |
109.5 |
| HG |
CG |
CD |
109.4 |
109.5 |
| HGA |
CG |
CD |
109.3 |
109.5 |
| CG |
CD |
CE |
109.5 |
109.4 |
| CG |
CD |
H8 |
109.5 |
109.5 |
| CG |
CD |
H9 |
109.5 |
109.4 |
| C |
CB |
HB1 |
107.4 |
109.5 |
| O |
C |
OXT |
119.7 |
120.1 |
| C |
OXT |
HXT |
109.5 |
117.0 |
| CE |
CD |
H8 |
109.5 |
109.4 |
| CE |
CD |
H9 |
109.5 |
109.5 |
| CD |
CE |
NF2 |
115.4 |
120.0 |
| CD |
CE |
OF1 |
115.4 |
120.0 |
| H8 |
CD |
H9 |
109.5 |
109.5 |
| NF2 |
CE |
OF1 |
120.0 |
120.0 |
| CE |
NF2 |
H11 |
118.3 |
120.0 |
| CE |
NF2 |
H12 |
120.9 |
120.0 |
| H11 |
NF2 |
H12 |
120.8 |
120.0 |
Torsion Angles for B3Q
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
H2 |
120.0 |
123.9 |
| CA |
N |
H2 |
H |
240.0 |
236.1 |
| H |
N |
CA |
H2 |
240.0 |
236.1 |
| CG |
CA |
N |
H |
294.0 |
300.1 |
| CG |
CA |
N |
H2 |
54.0 |
64.0 |
| HG |
CG |
CA |
HGA |
239.9 |
240.0 |
| HG |
CG |
CA |
CD |
120.0 |
120.0 |
| HGA |
CG |
CA |
CD |
240.1 |
240.0 |
| CA |
CG |
CD |
CE |
134.4 |
180.0 |
| CA |
CG |
CD |
H8 |
254.4 |
300.0 |
| CA |
CG |
CD |
H9 |
14.4 |
60.1 |
| CA |
CG |
HG |
HGA |
119.9 |
120.0 |
| CA |
CG |
HG |
CD |
239.8 |
240.0 |
| HGA |
CG |
HG |
CD |
119.9 |
120.1 |
| HG |
CG |
CD |
CE |
14.4 |
60.0 |
| HG |
CG |
CD |
H8 |
134.4 |
180.0 |
| HG |
CG |
CD |
H9 |
254.4 |
300.1 |
| CA |
CG |
HGA |
HG |
240.0 |
240.0 |
| CA |
CG |
HGA |
CD |
120.1 |
119.9 |
| HG |
CG |
HGA |
CD |
240.1 |
239.9 |
| HGA |
CG |
CD |
CE |
254.3 |
299.9 |
| HGA |
CG |
CD |
H8 |
14.3 |
59.9 |
| HGA |
CG |
CD |
H9 |
134.4 |
180.0 |
| CA |
CG |
CD |
HG |
120.0 |
120.0 |
| CA |
CG |
CD |
HGA |
240.1 |
240.1 |
| HG |
CG |
CD |
HGA |
120.1 |
120.1 |
| CE |
CD |
CG |
H8 |
240.0 |
240.0 |
| CE |
CD |
CG |
H9 |
120.0 |
120.0 |
| CG |
CD |
CE |
NF2 |
106.6 |
180.0 |
| CG |
CD |
CE |
OF1 |
253.4 |
360.0 |
| H8 |
CD |
CG |
H9 |
240.0 |
239.9 |
| CB |
CA |
N |
H |
54.9 |
60.0 |
| CB |
CA |
N |
H2 |
174.9 |
183.9 |
| CB |
CA |
CG |
HG |
240.1 |
295.0 |
| CB |
CA |
CG |
HGA |
0.2 |
55.0 |
| CB |
CA |
CG |
CD |
120.1 |
175.0 |
| OXT |
C |
CB |
HB1 |
125.0 |
60.0 |
| O |
C |
CB |
HB1 |
305.1 |
240.0 |
| O |
C |
OXT |
HXT |
360.0 |
359.9 |
| HA |
CA |
N |
H2 |
295.2 |
303.9 |
| HA |
CA |
CG |
HG |
119.4 |
175.0 |
| HA |
CA |
CG |
HGA |
239.5 |
295.0 |
| HA |
CA |
CG |
CD |
359.4 |
55.0 |
| CG |
CD |
CE |
H8 |
120.0 |
120.0 |
| CG |
CD |
CE |
H9 |
240.0 |
240.0 |
| H8 |
CD |
CE |
H9 |
120.0 |
120.0 |
| NF2 |
CE |
CD |
OF1 |
213.1 |
180.0 |
| CD |
CE |
NF2 |
H11 |
180.0 |
0.1 |
| CD |
CE |
NF2 |
H12 |
360.0 |
180.0 |
| CG |
CD |
H8 |
CE |
240.0 |
240.0 |
| CG |
CD |
H8 |
H9 |
120.0 |
120.0 |
| CE |
CD |
H8 |
H9 |
240.0 |
240.0 |
| H8 |
CD |
CE |
NF2 |
346.6 |
60.0 |
| H8 |
CD |
CE |
OF1 |
133.5 |
240.0 |
| CG |
CD |
H9 |
CE |
120.0 |
120.0 |
| CG |
CD |
H9 |
H8 |
240.0 |
239.9 |
| CE |
CD |
H9 |
H8 |
120.0 |
120.0 |
| H9 |
CD |
CE |
NF2 |
226.5 |
300.0 |
| H9 |
CD |
CE |
OF1 |
13.4 |
119.9 |
| NF2 |
CE |
CD |
H8 |
346.6 |
60.0 |
| NF2 |
CE |
CD |
H9 |
226.5 |
300.0 |
| CD |
CE |
NF2 |
OF1 |
145.3 |
180.0 |
| H11 |
NF2 |
CE |
H12 |
180.0 |
180.1 |
| OF1 |
CE |
CD |
H8 |
133.5 |
240.0 |
| OF1 |
CE |
CD |
H9 |
13.4 |
119.9 |
| CD |
CE |
OF1 |
NF2 |
214.7 |
180.0 |
| OF1 |
CE |
NF2 |
H11 |
34.8 |
180.1 |
| OF1 |
CE |
NF2 |
H12 |
214.7 |
0.0 |
| H11 |
NF2 |
CE |
OF1 |
34.8 |
180.1 |
| CE |
NF2 |
H11 |
H12 |
180.0 |
179.9 |
| H12 |
NF2 |
CE |
OF1 |
214.7 |
0.0 |
| CE |
NF2 |
H12 |
H11 |
180.0 |
180.1 |