PDB Chemical Component B3P

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B3P

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.524	1.529
C1	C3	1.519	1.529
C1	H11	1.115	1.090
C1	H12	1.115	1.089
C2	N2	1.382	1.468
C2	H21	1.115	1.089
C2	H22	1.115	1.090
C3	N1	1.459	1.468
C3	H31	1.114	1.089
C3	H32	1.115	1.090
N1	C4	1.455	1.468
N1	HN1	1.019	1.009
C4	C5	1.512	1.530
C4	C6	1.513	1.530
C4	C7	1.510	1.530
C5	O4	1.424	1.428
C5	H51	1.115	1.090
C5	H52	1.115	1.090
C6	O5	1.740	1.429
C6	H61	1.114	1.091
C6	H62	1.114	1.090
C7	O6	1.423	1.428
C7	H71	1.115	1.090
C7	H72	1.114	1.091
N2	C8	1.453	1.468
N2	HN2	1.020	1.009
C8	C9	1.508	1.530
C8	C10	1.499	1.530
C8	C11	1.517	1.530
C9	O1	1.404	1.428
C9	H91	1.115	1.090
C9	H92	1.115	1.090
C10	O2	1.377	1.429
C10	H101	1.115	1.090
C10	H102	1.115	1.091
C11	O3	1.426	1.428
C11	H111	1.114	1.091
C11	H112	1.115	1.090
O1	HO1	0.949	0.967
O2	HO2	0.950	0.967
O3	HO3	0.950	0.967
O4	HO4	0.951	0.967
O5	HO5	0.950	0.967
O6	HO6	0.950	0.967

Bond Angles for B3P

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C3	114.9	109.5
C2	C1	H11	110.3	109.5
C2	C1	H12	110.2	109.4
C1	C2	N2	112.6	109.5
C1	C2	H21	111.0	109.5
C1	C2	H22	111.1	109.4
C3	C1	H11	110.2	109.5
C3	C1	H12	110.2	109.4
C1	C3	N1	110.4	109.5
C1	C3	H31	111.9	109.5
C1	C3	H32	111.9	109.4
H11	C1	H12	100.0	109.5
N2	C2	H21	111.1	109.5
N2	C2	H22	111.1	109.4
C2	N2	C8	112.6	106.7
C2	N2	HN2	111.0	106.7
H21	C2	H22	99.2	109.5
N1	C3	H31	111.8	109.5
N1	C3	H32	111.8	109.4
C3	N1	C4	110.2	106.7
C3	N1	HN1	112.0	106.7
H31	C3	H32	98.5	109.5
C4	N1	HN1	111.9	106.7
N1	C4	C5	111.6	109.5
N1	C4	C6	105.3	109.5
N1	C4	C7	110.2	109.5
C5	C4	C6	111.8	109.4
C5	C4	C7	108.7	109.4
C4	C5	O4	111.3	109.5
C4	C5	H51	111.6	109.5
C4	C5	H52	111.6	109.4
C6	C4	C7	109.2	109.5
C4	C6	O5	124.9	109.5
C4	C6	H61	106.8	109.5
C4	C6	H62	106.8	109.5
C4	C7	O6	109.1	109.5
C4	C7	H71	112.4	109.5
C4	C7	H72	112.4	109.4
O4	C5	H51	111.5	109.5
O4	C5	H52	111.5	109.5
C5	O4	HO4	111.3	106.8
H51	C5	H52	98.8	109.5
O5	C6	H61	106.8	109.4
O5	C6	H62	106.7	109.5
C6	O5	HO5	124.9	106.8
H61	C6	H62	102.9	109.5
O6	C7	H71	112.3	109.5
O6	C7	H72	112.3	109.4
C7	O6	HO6	109.2	106.8
H71	C7	H72	98.2	109.5
C8	N2	HN2	111.1	106.7
N2	C8	C9	109.9	109.5
N2	C8	C10	107.9	109.5
N2	C8	C11	110.3	109.5
C9	C8	C10	112.1	109.4
C9	C8	C11	108.1	109.4
C8	C9	O1	114.4	109.5
C8	C9	H91	110.4	109.5
C8	C9	H92	110.4	109.4
C10	C8	C11	108.5	109.5
C8	C10	O2	111.2	109.5
C8	C10	H101	111.6	109.5
C8	C10	H102	111.6	109.5
C8	C11	O3	107.9	109.5
C8	C11	H111	112.8	109.4
C8	C11	H112	112.8	109.5
O1	C9	H91	110.4	109.5
O1	C9	H92	110.4	109.5
C9	O1	HO1	114.4	106.8
H91	C9	H92	99.9	109.5
O2	C10	H101	111.6	109.5
O2	C10	H102	111.6	109.4
C10	O2	HO2	111.1	106.8
H101	C10	H102	98.7	109.5
O3	C11	H111	112.8	109.4
O3	C11	H112	112.8	109.5
C11	O3	HO3	107.9	106.8
H111	C11	H112	97.6	109.5

Torsion Angles for B3P

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C3	C1	C2	H11	234.8	240.0
C3	C1	C2	H12	125.3	120.0
C2	C1	C3	N1	168.4	180.0
C2	C1	C3	H31	293.7	300.1
C2	C1	C3	H32	43.2	60.1
H11	C1	C2	H12	250.5	240.0
N2	C2	C1	H21	234.7	120.1
N2	C2	C1	H22	125.3	240.1
C1	C2	N2	C8	194.7	180.0
C1	C2	N2	HN2	69.4	66.2
H21	C2	C1	H22	250.6	120.0
C2	C1	C3	H11	125.3	120.0
C2	C1	C3	H12	234.7	240.0
C3	C1	C2	N2	179.3	180.0
C3	C1	C2	H21	304.6	59.9
C3	C1	C2	H22	54.0	299.9
H11	C1	C3	H12	109.5	120.0
N1	C3	C1	H31	234.7	239.9
N1	C3	C1	H32	125.2	119.9
C1	C3	N1	C4	158.8	180.0
C1	C3	N1	HN1	33.5	293.8
H31	C3	C1	H32	250.5	240.0
C2	C1	H11	C3	232.1	239.9
C2	C1	H11	H12	116.1	120.0
H11	C1	C2	N2	304.6	300.0
H11	C1	C2	H21	69.9	180.0
H11	C1	C2	H22	179.3	60.0
C3	C1	H11	H12	244.0	240.0
H11	C1	C3	N1	43.2	60.0
H11	C1	C3	H31	168.4	180.0
H11	C1	C3	H32	277.9	300.0
C2	C1	H12	C3	127.9	120.0
C2	C1	H12	H11	243.9	240.0
H12	C1	C2	N2	54.1	60.0
H12	C1	C2	H21	179.4	300.0
H12	C1	C2	H22	288.8	180.0
C3	C1	H12	H11	116.0	120.0
H12	C1	C3	N1	293.7	300.0
H12	C1	C3	H31	59.0	60.0
H12	C1	C3	H32	168.5	180.0
N2	C2	C1	C3	179.3	180.0
N2	C2	C1	H11	304.6	300.0
N2	C2	C1	H12	54.1	60.0
C1	C2	N2	H21	125.2	239.9
C1	C2	N2	H22	234.7	119.9
H21	C2	N2	H22	109.5	240.0
C8	N2	C2	HN2	125.2	113.8
C2	N2	C8	C9	111.8	180.0
C2	N2	C8	C10	349.2	60.0
C2	N2	C8	C11	230.9	300.0
H21	C2	C1	C3	304.6	59.9
H21	C2	C1	H11	69.9	180.0
H21	C2	C1	H12	179.4	300.0
C1	C2	H21	N2	233.9	120.1
C1	C2	H21	H22	116.9	240.0
N2	C2	H21	H22	243.0	120.0
H21	C2	N2	C8	69.5	300.0
H21	C2	N2	HN2	304.2	186.3
H22	C2	C1	C3	54.0	299.9
H22	C2	C1	H11	179.3	60.0
H22	C2	C1	H12	288.8	180.0
C1	C2	H22	N2	126.2	240.0
C1	C2	H22	H21	243.1	120.0
N2	C2	H22	H21	117.0	240.0
H22	C2	N2	C8	320.0	60.0
H22	C2	N2	HN2	194.7	306.2
N1	C3	C1	H11	43.2	60.0
N1	C3	C1	H12	293.7	300.0
C1	C3	N1	H31	125.3	120.1
C1	C3	N1	H32	234.7	240.1
H31	C3	N1	H32	109.5	120.0
C4	N1	C3	HN1	125.3	246.2
C3	N1	C4	C5	133.4	180.0
C3	N1	C4	C6	11.9	300.0
C3	N1	C4	C7	254.3	60.0
H31	C3	C1	H11	168.4	180.0
H31	C3	C1	H12	59.0	60.0
C1	C3	H31	N1	235.5	239.9
C1	C3	H31	H32	117.8	120.0
N1	C3	H31	H32	242.3	240.0
H31	C3	N1	C4	33.5	60.0
H31	C3	N1	HN1	268.2	173.7
H32	C3	C1	H11	277.9	300.0
H32	C3	C1	H12	168.5	180.0
C1	C3	H32	N1	124.4	120.0
C1	C3	H32	H31	242.2	240.0
N1	C3	H32	H31	117.7	120.0
H32	C3	N1	C4	284.0	300.0
H32	C3	N1	HN1	158.7	53.8
C4	N1	C3	H31	33.5	60.0
C4	N1	C3	H32	284.0	300.0
C3	N1	C4	HN1	234.7	113.8
C5	C4	N1	C6	121.5	240.0
C5	C4	N1	C7	239.1	120.0
N1	C4	C5	O4	222.4	60.0
N1	C4	C5	H51	347.7	180.0
N1	C4	C5	H52	97.2	300.0
C6	C4	N1	C7	117.6	240.0
N1	C4	C6	O5	132.0	300.0
N1	C4	C6	H61	257.3	59.9
N1	C4	C6	H62	6.8	180.0
N1	C4	C7	O6	213.8	60.0
N1	C4	C7	H71	339.0	180.0
N1	C4	C7	H72	88.5	300.0
HN1	N1	C3	H31	268.2	173.7
HN1	N1	C3	H32	158.7	53.8
C3	N1	HN1	C4	124.3	246.2
HN1	N1	C4	C5	258.7	66.2
HN1	N1	C4	C6	137.2	186.2
HN1	N1	C4	C7	19.6	306.2
C5	C4	N1	HN1	258.7	66.2
N1	C4	C5	C6	242.4	120.0
N1	C4	C5	C7	121.7	240.0
C6	C4	C5	C7	239.4	119.9
C5	C4	C6	O5	10.6	60.1
C5	C4	C6	H61	135.9	180.0
C5	C4	C6	H62	245.4	300.0
C5	C4	C7	O6	336.4	299.9
C5	C4	C7	H71	101.6	60.0
C5	C4	C7	H72	211.2	180.0
O4	C5	C4	H51	234.7	240.0
O4	C5	C4	H52	125.2	120.0
C4	C5	O4	HO4	180.0	180.1
H51	C5	C4	H52	250.5	240.0
C6	C4	N1	HN1	137.2	186.2
N1	C4	C6	C5	121.4	239.9
N1	C4	C6	C7	241.7	120.0
C5	C4	C6	C7	120.3	240.1
C6	C4	C5	O4	340.1	300.0
C6	C4	C5	H51	105.3	60.0
C6	C4	C5	H52	214.8	180.0
C6	C4	C7	O6	98.6	180.0
C6	C4	C7	H71	223.8	300.1
C6	C4	C7	H72	333.4	60.0
O5	C6	C4	H61	234.8	240.1
O5	C6	C4	H62	125.2	120.1
C4	C6	O5	HO5	180.0	180.0
H61	C6	C4	H62	250.5	240.0
C7	C4	N1	HN1	19.6	306.2
N1	C4	C7	C5	237.4	120.1
N1	C4	C7	C6	115.2	240.0
C5	C4	C7	C6	237.8	119.9
C7	C4	C5	O4	100.7	180.0
C7	C4	C5	H51	226.0	300.0
C7	C4	C5	H52	335.4	60.0
C7	C4	C6	O5	250.3	180.0
C7	C4	C6	H61	15.6	299.9
C7	C4	C6	H62	125.1	60.0
O6	C7	C4	H71	234.8	239.9
O6	C7	C4	H72	125.2	119.9
C4	C7	O6	HO6	180.0	180.0
H71	C7	C4	H72	250.4	240.0
O4	C5	C4	C6	340.1	300.0
O4	C5	C4	C7	100.7	180.0
C4	C5	O4	H51	125.3	120.0
C4	C5	O4	H52	234.7	240.1
H51	C5	O4	H52	109.4	120.0
H51	C5	C4	C6	105.3	60.0
H51	C5	C4	C7	226.0	300.0
C4	C5	H51	O4	234.8	240.0
C4	C5	H51	H52	117.5	120.0
O4	C5	H51	H52	242.6	240.0
H51	C5	O4	HO4	54.7	60.1
H52	C5	C4	C6	214.8	180.0
H52	C5	C4	C7	335.4	60.0
C4	C5	H52	O4	125.1	120.0
C4	C5	H52	H51	242.5	240.0
O4	C5	H52	H51	117.4	120.0
H52	C5	O4	HO4	305.3	300.1
O5	C6	C4	C7	250.3	180.0
C4	C6	O5	H61	125.2	119.9
C4	C6	O5	H62	234.7	239.9
H61	C6	O5	H62	109.5	120.0
H61	C6	C4	C7	15.6	299.9
C4	C6	H61	O5	224.4	240.1
C4	C6	H61	H62	112.2	120.1
O5	C6	H61	H62	247.8	240.0
H61	C6	O5	HO5	54.8	60.1
H62	C6	C4	C7	125.1	60.0
C4	C6	H62	O5	135.6	120.0
C4	C6	H62	H61	247.8	240.0
O5	C6	H62	H61	112.2	120.0
H62	C6	O5	HO5	305.3	300.1
C4	C7	O6	H71	125.2	120.1
C4	C7	O6	H72	234.8	240.1
H71	C7	O6	H72	109.5	120.0
C4	C7	H71	O6	236.6	240.0
C4	C7	H71	H72	118.3	120.0
O6	C7	H71	H72	241.8	240.0
H71	C7	O6	HO6	54.8	59.9
C4	C7	H72	O6	123.4	120.0
C4	C7	H72	H71	241.7	240.0
O6	C7	H72	H71	118.3	120.0
H72	C7	O6	HO6	305.2	299.9
C8	N2	C2	H21	69.5	300.0
C8	N2	C2	H22	320.0	60.0
C2	N2	C8	HN2	234.8	246.2
C9	C8	N2	C10	122.6	120.0
C9	C8	N2	C11	241.0	240.0
N2	C8	C9	O1	288.3	300.0
N2	C8	C9	H91	53.6	180.0
N2	C8	C9	H92	163.1	60.0
C10	C8	N2	C11	118.4	120.0
N2	C8	C10	O2	196.6	60.0
N2	C8	C10	H101	321.9	180.0
N2	C8	C10	H102	71.3	300.1
N2	C8	C11	O3	90.5	300.0
N2	C8	C11	H111	215.8	60.0
N2	C8	C11	H112	325.3	180.0
HN2	N2	C2	H21	304.2	186.3
HN2	N2	C2	H22	194.7	306.2
C2	N2	HN2	C8	126.1	113.8
HN2	N2	C8	C9	237.0	293.8
HN2	N2	C8	C10	114.4	173.8
HN2	N2	C8	C11	356.1	53.8
C9	C8	N2	HN2	237.0	293.8
N2	C8	C9	C10	239.9	240.0
N2	C8	C9	C11	120.4	120.0
C10	C8	C9	C11	240.5	240.1
C9	C8	C10	O2	75.4	299.9
C9	C8	C10	H101	200.7	60.0
C9	C8	C10	H102	310.1	180.0
C9	C8	C11	O3	210.7	60.1
C9	C8	C11	H111	336.0	180.0
C9	C8	C11	H112	85.5	300.0
O1	C9	C8	H91	234.7	120.0
O1	C9	C8	H92	125.3	240.0
C8	C9	O1	HO1	180.0	179.9
H91	C9	C8	H92	250.5	120.0
C10	C8	N2	HN2	114.4	173.8
N2	C8	C10	C9	121.2	120.1
N2	C8	C10	C11	240.5	240.0
C9	C8	C10	C11	119.3	119.9
C10	C8	C9	O1	48.4	60.0
C10	C8	C9	H91	173.7	300.0
C10	C8	C9	H92	283.1	180.0
C10	C8	C11	O3	332.5	180.0
C10	C8	C11	H111	97.8	300.0
C10	C8	C11	H112	207.2	59.9
O2	C10	C8	H101	234.7	239.9
O2	C10	C8	H102	125.3	119.9
C8	C10	O2	HO2	180.0	180.0
H101	C10	C8	H102	250.6	240.0
C11	C8	N2	HN2	356.1	53.8
N2	C8	C11	C9	239.8	239.9
N2	C8	C11	C10	118.0	120.0
C9	C8	C11	C10	238.2	240.1
C11	C8	C9	O1	167.9	180.0
C11	C8	C9	H91	293.2	60.0
C11	C8	C9	H92	42.7	300.0
C11	C8	C10	O2	316.1	180.0
C11	C8	C10	H101	81.4	300.0
C11	C8	C10	H102	190.8	60.1
O3	C11	C8	H111	234.7	240.1
O3	C11	C8	H112	125.3	120.1
C8	C11	O3	HO3	180.0	180.0
H111	C11	C8	H112	250.5	240.0
O1	C9	C8	C10	48.4	60.0
O1	C9	C8	C11	167.9	180.0
C8	C9	O1	H91	125.2	240.0
C8	C9	O1	H92	234.7	119.9
H91	C9	O1	H92	109.5	240.0
H91	C9	C8	C10	173.7	300.0
H91	C9	C8	C11	293.2	60.0
C8	C9	H91	O1	232.6	120.0
C8	C9	H91	H92	116.3	240.0
O1	C9	H91	H92	243.7	120.0
H91	C9	O1	HO1	54.7	299.9
H92	C9	C8	C10	283.1	180.0
H92	C9	C8	C11	42.7	300.0
C8	C9	H92	O1	127.5	240.0
C8	C9	H92	H91	243.8	120.0
O1	C9	H92	H91	116.3	240.0
H92	C9	O1	HO1	305.2	59.9
O2	C10	C8	C11	316.1	180.0
C8	C10	O2	H101	125.3	120.1
C8	C10	O2	H102	234.7	240.1
H101	C10	O2	H102	109.4	120.0
H101	C10	C8	C11	81.4	300.0
C8	C10	H101	O2	234.9	240.0
C8	C10	H101	H102	117.5	120.0
O2	C10	H101	H102	242.5	240.0
H101	C10	O2	HO2	54.7	59.9
H102	C10	C8	C11	190.8	60.1
C8	C10	H102	O2	125.1	119.9
C8	C10	H102	H101	242.5	239.9
O2	C10	H102	H101	117.5	120.0
H102	C10	O2	HO2	305.3	299.9
C8	C11	O3	H111	125.3	119.9
C8	C11	O3	H112	234.8	239.9
H111	C11	O3	H112	109.5	120.0
C8	C11	H111	O3	237.4	240.0
C8	C11	H111	H112	118.7	120.0
O3	C11	H111	H112	241.3	240.0
H111	C11	O3	HO3	54.7	60.1
C8	C11	H112	O3	122.5	120.0
C8	C11	H112	H111	241.3	240.0
O3	C11	H112	H111	118.7	120.0
H112	C11	O3	HO3	305.3	300.1
HO1	O1	C9	H91	54.7	299.9
HO1	O1	C9	H92	305.2	59.9
HO2	O2	C10	H101	54.7	59.9
HO2	O2	C10	H102	305.3	299.9
HO3	O3	C11	H111	54.7	60.1
HO3	O3	C11	H112	305.3	300.1
HO4	O4	C5	H51	54.7	60.1
HO4	O4	C5	H52	305.3	300.1
HO5	O5	C6	H61	54.8	60.1
HO5	O5	C6	H62	305.3	300.1
HO6	O6	C7	H71	54.8	59.9
HO6	O6	C7	H72	305.2	299.9