PDB Chemical Component B3E
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B3E
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.465 |
1.466 |
| N |
H |
1.000 |
0.994 |
| N |
H2 |
1.000 |
0.995 |
| CA |
CG |
1.520 |
1.543 |
| CA |
CB |
1.505 |
1.535 |
| CA |
HA |
1.100 |
1.096 |
| CG |
CD |
1.529 |
1.534 |
| CG |
HG2 |
1.100 |
1.097 |
| CG |
HG3 |
1.100 |
1.098 |
| CD |
CE |
1.528 |
1.513 |
| CD |
HD2 |
1.100 |
1.094 |
| CD |
HD3 |
1.100 |
1.096 |
| CE |
OF2 |
1.247 |
1.223 |
| CE |
OF1 |
1.285 |
1.359 |
| OF1 |
HOF1 |
0.950 |
0.981 |
| CB |
C |
1.490 |
1.507 |
| CB |
HB1 |
1.100 |
1.098 |
| CB |
HB2 |
1.100 |
1.098 |
| C |
OXT |
1.337 |
1.355 |
| C |
O |
1.210 |
1.223 |
| OXT |
HXT |
0.950 |
0.981 |
Bond Angles for B3E
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
H |
109.5 |
117.9 |
| CA |
N |
H2 |
109.5 |
117.7 |
| N |
CA |
CG |
109.3 |
110.0 |
| N |
CA |
CB |
109.9 |
108.9 |
| N |
CA |
HA |
108.8 |
107.8 |
| H |
N |
H2 |
109.5 |
123.0 |
| CG |
CA |
CB |
108.0 |
111.5 |
| CG |
CA |
HA |
110.7 |
109.3 |
| CA |
CG |
CD |
110.0 |
114.4 |
| CA |
CG |
HG2 |
109.3 |
109.7 |
| CA |
CG |
HG3 |
109.2 |
109.2 |
| CB |
CA |
HA |
110.1 |
109.2 |
| CA |
CB |
C |
113.1 |
112.5 |
| CA |
CB |
HB1 |
108.3 |
111.3 |
| CA |
CB |
HB2 |
107.5 |
111.0 |
| CD |
CG |
HG2 |
109.3 |
108.8 |
| CD |
CG |
HG3 |
109.2 |
108.2 |
| CG |
CD |
CE |
113.3 |
113.1 |
| CG |
CD |
HD2 |
108.2 |
110.5 |
| CG |
CD |
HD3 |
107.3 |
108.6 |
| HG2 |
CG |
HG3 |
109.8 |
106.3 |
| CE |
CD |
HD2 |
108.2 |
109.1 |
| CE |
CD |
HD3 |
107.3 |
107.0 |
| CD |
CE |
OF2 |
115.5 |
125.6 |
| CD |
CE |
OF1 |
120.3 |
111.4 |
| HD2 |
CD |
HD3 |
112.5 |
108.3 |
| OF2 |
CE |
OF1 |
124.2 |
123.0 |
| CE |
OF1 |
HOF1 |
109.5 |
115.0 |
| C |
CB |
HB1 |
108.3 |
107.2 |
| C |
CB |
HB2 |
107.5 |
108.2 |
| CB |
C |
OXT |
117.3 |
111.3 |
| CB |
C |
O |
117.6 |
124.7 |
| HB1 |
CB |
HB2 |
112.4 |
106.3 |
| O |
C |
OXT |
125.0 |
124.1 |
| C |
OXT |
HXT |
109.5 |
111.9 |
Torsion Angles for B3E
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H |
N |
CA |
H2 |
240.0 |
166.6 |
| CG |
CA |
N |
CB |
241.6 |
237.5 |
| CG |
CA |
N |
HA |
121.0 |
119.1 |
| N |
CA |
CG |
CD |
234.7 |
301.9 |
| N |
CA |
CG |
HG2 |
354.7 |
64.4 |
| N |
CA |
CG |
HG3 |
114.9 |
180.4 |
| CB |
CA |
N |
HA |
239.4 |
241.6 |
| N |
CA |
CB |
C |
84.0 |
177.5 |
| N |
CA |
CB |
HB1 |
204.0 |
297.9 |
| N |
CA |
CB |
HB2 |
325.6 |
56.2 |
| CA |
N |
H |
H2 |
120.0 |
194.2 |
| H |
N |
CA |
CG |
149.7 |
169.7 |
| H |
N |
CA |
CB |
268.1 |
292.2 |
| H |
N |
CA |
HA |
28.7 |
50.6 |
| CA |
N |
H2 |
H |
240.0 |
165.9 |
| H2 |
N |
CA |
CG |
269.8 |
3.1 |
| H2 |
N |
CA |
CB |
28.1 |
125.6 |
| H2 |
N |
CA |
HA |
148.7 |
244.0 |
| CG |
CA |
N |
H |
149.7 |
169.7 |
| CG |
CA |
N |
H2 |
269.8 |
3.1 |
| N |
CA |
CG |
CB |
119.5 |
121.0 |
| N |
CA |
CG |
HA |
240.1 |
241.8 |
| CB |
CA |
CG |
HA |
120.6 |
120.9 |
| CG |
CA |
CB |
C |
203.2 |
299.1 |
| CG |
CA |
CB |
HB1 |
323.2 |
59.5 |
| CG |
CA |
CB |
HB2 |
84.8 |
177.8 |
| CD |
CG |
CA |
HG2 |
240.0 |
237.5 |
| CD |
CG |
CA |
HG3 |
119.8 |
121.4 |
| CA |
CG |
CD |
CE |
127.6 |
183.0 |
| CA |
CG |
CD |
HD2 |
247.6 |
60.3 |
| CA |
CG |
CD |
HD3 |
9.3 |
301.6 |
| HG2 |
CG |
CA |
HG3 |
239.8 |
243.9 |
| CB |
CA |
N |
H |
268.1 |
292.2 |
| CB |
CA |
N |
H2 |
28.1 |
125.6 |
| N |
CA |
CB |
CG |
240.8 |
238.4 |
| N |
CA |
CB |
HA |
119.9 |
117.5 |
| CG |
CA |
CB |
HA |
239.0 |
239.1 |
| CB |
CA |
CG |
CD |
115.1 |
180.9 |
| CB |
CA |
CG |
HG2 |
235.1 |
303.4 |
| CB |
CA |
CG |
HG3 |
355.3 |
59.5 |
| C |
CB |
CA |
HB1 |
240.0 |
239.6 |
| C |
CB |
CA |
HB2 |
118.4 |
121.4 |
| CA |
CB |
C |
OXT |
243.5 |
153.2 |
| CA |
CB |
C |
O |
64.8 |
332.7 |
| HB1 |
CB |
CA |
HB2 |
238.4 |
241.7 |
| HA |
CA |
N |
H |
28.7 |
50.6 |
| HA |
CA |
N |
H2 |
148.7 |
244.0 |
| N |
CA |
HA |
CG |
120.2 |
119.5 |
| N |
CA |
HA |
CB |
239.5 |
241.8 |
| CG |
CA |
HA |
CB |
119.3 |
122.3 |
| HA |
CA |
CG |
CD |
354.5 |
60.0 |
| HA |
CA |
CG |
HG2 |
114.6 |
182.5 |
| HA |
CA |
CG |
HG3 |
234.7 |
298.6 |
| HA |
CA |
CB |
C |
324.2 |
60.1 |
| HA |
CA |
CB |
HB1 |
84.1 |
180.4 |
| HA |
CA |
CB |
HB2 |
205.7 |
298.7 |
| CD |
CG |
CA |
CB |
115.1 |
180.9 |
| CD |
CG |
CA |
HA |
354.5 |
60.0 |
| CA |
CG |
CD |
HG2 |
120.0 |
123.0 |
| CA |
CG |
CD |
HG3 |
240.2 |
238.0 |
| HG2 |
CG |
CD |
HG3 |
120.2 |
115.0 |
| CE |
CD |
CG |
HD2 |
240.0 |
122.7 |
| CE |
CD |
CG |
HD3 |
118.3 |
241.4 |
| CG |
CD |
CE |
OF2 |
12.3 |
356.5 |
| CG |
CD |
CE |
OF1 |
191.1 |
175.3 |
| HD2 |
CD |
CG |
HD3 |
238.3 |
118.6 |
| HG2 |
CG |
CA |
CB |
235.1 |
303.4 |
| HG2 |
CG |
CA |
HA |
114.6 |
182.5 |
| CA |
CG |
HG2 |
CD |
239.6 |
234.2 |
| CA |
CG |
HG2 |
HG3 |
119.8 |
118.0 |
| CD |
CG |
HG2 |
HG3 |
240.2 |
243.7 |
| HG2 |
CG |
CD |
CE |
7.6 |
60.0 |
| HG2 |
CG |
CD |
HD2 |
127.6 |
297.3 |
| HG2 |
CG |
CD |
HD3 |
249.3 |
178.7 |
| HG3 |
CG |
CA |
CB |
355.3 |
59.5 |
| HG3 |
CG |
CA |
HA |
234.7 |
298.6 |
| CA |
CG |
HG3 |
CD |
120.3 |
125.1 |
| CA |
CG |
HG3 |
HG2 |
240.2 |
241.7 |
| CD |
CG |
HG3 |
HG2 |
119.9 |
116.6 |
| HG3 |
CG |
CD |
CE |
247.4 |
305.0 |
| HG3 |
CG |
CD |
HD2 |
7.4 |
182.3 |
| HG3 |
CG |
CD |
HD3 |
129.1 |
63.6 |
| CE |
CD |
CG |
HG2 |
7.6 |
60.0 |
| CE |
CD |
CG |
HG3 |
247.4 |
305.0 |
| CG |
CD |
CE |
HD2 |
120.0 |
236.5 |
| CG |
CD |
CE |
HD3 |
241.7 |
119.5 |
| HD2 |
CD |
CE |
HD3 |
121.7 |
243.0 |
| OF2 |
CE |
CD |
OF1 |
181.2 |
181.1 |
| CD |
CE |
OF1 |
HOF1 |
181.2 |
181.2 |
| HD2 |
CD |
CG |
HG2 |
127.6 |
297.3 |
| HD2 |
CD |
CG |
HG3 |
7.4 |
182.3 |
| CG |
CD |
HD2 |
CE |
236.8 |
125.0 |
| CG |
CD |
HD2 |
HD3 |
118.4 |
241.2 |
| CE |
CD |
HD2 |
HD3 |
241.6 |
116.2 |
| HD2 |
CD |
CE |
OF2 |
252.3 |
119.9 |
| HD2 |
CD |
CE |
OF1 |
71.1 |
298.8 |
| HD3 |
CD |
CG |
HG2 |
249.3 |
178.7 |
| HD3 |
CD |
CG |
HG3 |
129.1 |
63.6 |
| CG |
CD |
HD3 |
CE |
122.1 |
237.6 |
| CG |
CD |
HD3 |
HD2 |
241.1 |
120.0 |
| CE |
CD |
HD3 |
HD2 |
118.9 |
242.4 |
| HD3 |
CD |
CE |
OF2 |
130.6 |
236.9 |
| HD3 |
CD |
CE |
OF1 |
309.4 |
55.8 |
| OF2 |
CE |
CD |
HD2 |
252.3 |
119.9 |
| OF2 |
CE |
CD |
HD3 |
130.6 |
236.9 |
| CD |
CE |
OF2 |
OF1 |
178.8 |
178.7 |
| OF2 |
CE |
OF1 |
HOF1 |
360.0 |
0.1 |
| OF1 |
CE |
CD |
HD2 |
71.1 |
298.8 |
| OF1 |
CE |
CD |
HD3 |
309.4 |
55.8 |
| CD |
CE |
OF1 |
OF2 |
181.3 |
181.1 |
| C |
CB |
CA |
HA |
324.2 |
60.1 |
| CA |
CB |
C |
HB1 |
120.0 |
122.7 |
| CA |
CB |
C |
HB2 |
241.6 |
237.0 |
| HB1 |
CB |
C |
HB2 |
121.6 |
114.3 |
| O |
C |
CB |
OXT |
181.3 |
179.5 |
| CB |
C |
OXT |
HXT |
181.4 |
179.5 |
| HB1 |
CB |
CA |
HA |
84.1 |
180.4 |
| CA |
CB |
HB1 |
C |
237.0 |
236.5 |
| CA |
CB |
HB1 |
HB2 |
118.5 |
121.0 |
| C |
CB |
HB1 |
HB2 |
241.5 |
244.5 |
| HB1 |
CB |
C |
OXT |
123.5 |
30.5 |
| HB1 |
CB |
C |
O |
304.8 |
210.0 |
| HB2 |
CB |
CA |
HA |
205.7 |
298.7 |
| CA |
CB |
HB2 |
C |
122.0 |
123.9 |
| CA |
CB |
HB2 |
HB1 |
241.0 |
238.8 |
| C |
CB |
HB2 |
HB1 |
119.0 |
114.9 |
| HB2 |
CB |
C |
OXT |
1.9 |
276.2 |
| HB2 |
CB |
C |
O |
183.2 |
95.7 |
| OXT |
C |
CB |
HB1 |
123.5 |
30.5 |
| OXT |
C |
CB |
HB2 |
1.9 |
276.2 |
| CB |
C |
OXT |
O |
181.4 |
179.5 |
| O |
C |
CB |
HB1 |
304.8 |
210.0 |
| O |
C |
CB |
HB2 |
183.2 |
95.7 |
| CB |
C |
O |
OXT |
178.6 |
180.6 |
| O |
C |
OXT |
HXT |
0.0 |
0.1 |