Atom Nomenclature for B34

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for B34

Atom Name (V3) Atom Name (V2)
O26 O26
S28 S28
O25 O25
C12 C12
C9 C9
C5 C5
N22 N22
C13 C13
C10 C10
C6 C6
C2 C2
C14 C14
C16 C16
O24 O24
N23 N23
C17 C17
C21 C21
C19 C19
C18 C18
C15 C15
O27 O27
C20 C20
C11 C11
C7 C7
C3 C3
C8 C8
C4 C4
C1 C1
H9 H9
H5 H5
H6 H6
H2 H2
H17 H17
H21 H21
H19 H19
H19A H19A
H19B H19B
H18 H18
H18A H18A
H18B H18B
H20 H20
H20A H20A
H7 H7
H3 H3
H8 H8
H4 H4
H1 H1
H201 H201