PDB Chemical Component B2J
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B2J
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1 |
C2 |
1.536 |
1.530 |
| C2 |
S3 |
1.840 |
1.809 |
| S3 |
C4 |
1.759 |
1.762 |
| C4 |
N5 |
1.339 |
1.330 |
| C4 |
N6 |
1.344 |
1.332 |
| N5 |
C10 |
1.351 |
1.328 |
| N6 |
C7 |
1.359 |
1.321 |
| C7 |
C8 |
1.557 |
1.507 |
| C7 |
N9 |
1.352 |
1.321 |
| N9 |
C10 |
1.352 |
1.332 |
| C10 |
N11 |
1.331 |
1.379 |
| C1 |
H1 |
1.100 |
1.090 |
| C1 |
H1A |
1.100 |
1.090 |
| C1 |
H1B |
1.100 |
1.090 |
| C2 |
H2 |
1.100 |
1.091 |
| C2 |
H2A |
1.100 |
1.089 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H8A |
1.100 |
1.091 |
| C8 |
H8B |
1.100 |
1.090 |
| N11 |
HN11 |
1.000 |
0.971 |
| N11 |
HN1A |
1.000 |
0.970 |
Bond Angles for B2J
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
S3 |
112.6 |
109.5 |
| C2 |
C1 |
H1 |
109.5 |
109.5 |
| C2 |
C1 |
H1A |
109.5 |
109.5 |
| C2 |
C1 |
H1B |
109.5 |
109.5 |
| C1 |
C2 |
H2 |
108.5 |
109.5 |
| C1 |
C2 |
H2A |
108.5 |
109.4 |
| C2 |
S3 |
C4 |
103.5 |
100.0 |
| S3 |
C2 |
H2 |
108.4 |
109.5 |
| S3 |
C2 |
H2A |
108.4 |
109.5 |
| S3 |
C4 |
N5 |
116.7 |
120.1 |
| S3 |
C4 |
N6 |
122.4 |
120.1 |
| N5 |
C4 |
N6 |
120.9 |
119.8 |
| C4 |
N5 |
C10 |
120.2 |
119.9 |
| C4 |
N6 |
C7 |
119.6 |
120.1 |
| N5 |
C10 |
N9 |
119.1 |
119.9 |
| N5 |
C10 |
N11 |
119.4 |
120.1 |
| N6 |
C7 |
C8 |
121.1 |
119.9 |
| N6 |
C7 |
N9 |
119.3 |
120.2 |
| C8 |
C7 |
N9 |
119.5 |
120.0 |
| C7 |
C8 |
H8 |
109.5 |
109.5 |
| C7 |
C8 |
H8A |
109.5 |
109.4 |
| C7 |
C8 |
H8B |
109.4 |
109.5 |
| C7 |
N9 |
C10 |
120.6 |
120.2 |
| N9 |
C10 |
N11 |
121.2 |
120.0 |
| C10 |
N11 |
HN11 |
109.5 |
120.0 |
| C10 |
N11 |
HN1A |
109.5 |
120.1 |
| H1 |
C1 |
H1A |
109.5 |
109.4 |
| H1 |
C1 |
H1B |
109.4 |
109.5 |
| H1A |
C1 |
H1B |
109.5 |
109.5 |
| H2 |
C2 |
H2A |
110.5 |
109.5 |
| H8 |
C8 |
H8A |
109.4 |
109.4 |
| H8 |
C8 |
H8B |
109.5 |
109.5 |
| H8A |
C8 |
H8B |
109.5 |
109.5 |
| HN11 |
N11 |
HN1A |
109.5 |
120.0 |
Torsion Angles for B2J
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1 |
C2 |
S3 |
C4 |
182.3 |
180.0 |
| S3 |
C2 |
C1 |
H2 |
240.0 |
240.0 |
| S3 |
C2 |
C1 |
H2A |
120.0 |
120.1 |
| H1 |
C1 |
C2 |
H1A |
239.9 |
240.1 |
| H1 |
C1 |
C2 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H1B |
240.0 |
240.0 |
| H2 |
C2 |
C1 |
H2A |
240.0 |
240.0 |
| S3 |
C2 |
C1 |
H1 |
180.0 |
180.0 |
| S3 |
C2 |
C1 |
H1A |
300.0 |
300.0 |
| S3 |
C2 |
C1 |
H1B |
60.0 |
60.0 |
| C1 |
C2 |
S3 |
H2 |
120.0 |
120.0 |
| C1 |
C2 |
S3 |
H2A |
240.0 |
240.0 |
| C2 |
S3 |
C4 |
N5 |
207.2 |
360.0 |
| C2 |
S3 |
C4 |
N6 |
28.2 |
179.7 |
| H2 |
C2 |
S3 |
H2A |
120.0 |
120.0 |
| C4 |
S3 |
C2 |
H2 |
62.3 |
60.0 |
| C4 |
S3 |
C2 |
H2A |
302.3 |
300.0 |
| N5 |
C4 |
S3 |
N6 |
179.0 |
180.3 |
| S3 |
C4 |
N5 |
C10 |
180.0 |
180.0 |
| S3 |
C4 |
N6 |
C7 |
178.4 |
180.0 |
| S3 |
C4 |
N5 |
N6 |
181.0 |
179.7 |
| N5 |
C4 |
N6 |
C7 |
359.5 |
359.8 |
| C4 |
N5 |
C10 |
N9 |
4.7 |
360.0 |
| C4 |
N5 |
C10 |
N11 |
179.5 |
180.0 |
| S3 |
C4 |
N6 |
N5 |
178.9 |
180.3 |
| N6 |
C4 |
N5 |
C10 |
358.9 |
0.2 |
| C4 |
N6 |
C7 |
C8 |
182.9 |
180.0 |
| C4 |
N6 |
C7 |
N9 |
358.3 |
360.0 |
| C10 |
N5 |
C4 |
N6 |
358.9 |
0.2 |
| C7 |
N9 |
C10 |
N5 |
353.1 |
359.8 |
| N9 |
C10 |
N5 |
N11 |
185.2 |
180.0 |
| N5 |
C10 |
N11 |
HN11 |
360.0 |
360.0 |
| N5 |
C10 |
N11 |
HN1A |
120.0 |
180.0 |
| C8 |
C7 |
N6 |
N9 |
184.5 |
180.0 |
| N6 |
C7 |
C8 |
H8 |
0.0 |
90.1 |
| N6 |
C7 |
C8 |
H8A |
120.0 |
210.0 |
| N6 |
C7 |
C8 |
H8B |
240.0 |
330.0 |
| N6 |
C7 |
N9 |
C10 |
5.4 |
0.3 |
| N6 |
C7 |
C8 |
N9 |
175.5 |
180.0 |
| C8 |
C7 |
N9 |
C10 |
180.9 |
180.2 |
| H8 |
C8 |
C7 |
H8A |
240.0 |
240.1 |
| H8 |
C8 |
C7 |
H8B |
120.0 |
120.1 |
| H8A |
C8 |
C7 |
H8B |
240.0 |
240.0 |
| N5 |
C10 |
N9 |
C7 |
353.1 |
359.8 |
| N6 |
C7 |
N9 |
C8 |
184.4 |
180.0 |
| N9 |
C7 |
C8 |
H8 |
184.5 |
270.1 |
| N9 |
C7 |
C8 |
H8A |
304.5 |
30.0 |
| N9 |
C7 |
C8 |
H8B |
64.5 |
150.0 |
| C7 |
N9 |
C10 |
N11 |
178.4 |
179.8 |
| N5 |
C10 |
N9 |
N11 |
174.7 |
180.0 |
| N9 |
C10 |
N11 |
HN11 |
174.6 |
180.0 |
| N9 |
C10 |
N11 |
HN1A |
294.6 |
360.0 |
| N5 |
C10 |
N11 |
N9 |
185.4 |
180.0 |
| HN11 |
N11 |
C10 |
HN1A |
240.0 |
180.0 |
| H1 |
C1 |
C2 |
S3 |
180.0 |
180.0 |
| C2 |
C1 |
H1 |
H1A |
120.0 |
120.0 |
| C2 |
C1 |
H1 |
H1B |
240.0 |
240.0 |
| H1 |
C1 |
C2 |
H2 |
300.0 |
300.0 |
| H1 |
C1 |
C2 |
H2A |
60.0 |
60.0 |
| H1A |
C1 |
H1 |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
S3 |
300.0 |
300.0 |
| C2 |
C1 |
H1A |
H1 |
239.9 |
240.0 |
| C2 |
C1 |
H1A |
H1B |
120.0 |
120.0 |
| H1A |
C1 |
C2 |
H2 |
60.0 |
59.9 |
| H1A |
C1 |
C2 |
H2A |
180.0 |
179.9 |
| H1 |
C1 |
H1A |
H1B |
240.1 |
240.0 |
| H1B |
C1 |
C2 |
S3 |
60.0 |
60.0 |
| C2 |
C1 |
H1B |
H1 |
120.0 |
120.0 |
| C2 |
C1 |
H1B |
H1A |
240.0 |
240.0 |
| H1B |
C1 |
C2 |
H2 |
180.0 |
180.0 |
| H1B |
C1 |
C2 |
H2A |
300.0 |
299.9 |
| H1 |
C1 |
H1B |
H1A |
120.0 |
120.0 |
| C1 |
C2 |
H2 |
S3 |
237.5 |
240.0 |
| H2 |
C2 |
C1 |
H1 |
300.0 |
300.0 |
| H2 |
C2 |
C1 |
H1A |
60.0 |
59.9 |
| H2 |
C2 |
C1 |
H1B |
180.0 |
180.0 |
| C1 |
C2 |
H2 |
H2A |
118.8 |
120.0 |
| H2 |
C2 |
S3 |
C4 |
62.3 |
60.0 |
| S3 |
C2 |
H2 |
H2A |
241.3 |
239.9 |
| C1 |
C2 |
H2A |
S3 |
122.5 |
120.0 |
| H2A |
C2 |
C1 |
H1 |
60.0 |
60.0 |
| H2A |
C2 |
C1 |
H1A |
180.0 |
179.9 |
| H2A |
C2 |
C1 |
H1B |
300.0 |
299.9 |
| C1 |
C2 |
H2A |
H2 |
241.2 |
240.0 |
| H2A |
C2 |
S3 |
C4 |
302.3 |
300.0 |
| S3 |
C2 |
H2A |
H2 |
118.7 |
120.0 |
| H8 |
C8 |
C7 |
N9 |
184.5 |
270.1 |
| C7 |
C8 |
H8 |
H8A |
120.0 |
119.9 |
| C7 |
C8 |
H8 |
H8B |
240.0 |
239.9 |
| H8A |
C8 |
H8 |
H8B |
120.0 |
120.0 |
| H8A |
C8 |
C7 |
N9 |
304.5 |
30.0 |
| C7 |
C8 |
H8A |
H8 |
240.0 |
240.0 |
| C7 |
C8 |
H8A |
H8B |
120.0 |
120.0 |
| H8 |
C8 |
H8A |
H8B |
240.0 |
240.0 |
| H8B |
C8 |
C7 |
N9 |
64.5 |
150.0 |
| C7 |
C8 |
H8B |
H8 |
120.0 |
120.1 |
| C7 |
C8 |
H8B |
H8A |
240.0 |
240.0 |
| H8 |
C8 |
H8B |
H8A |
120.0 |
120.0 |
| C10 |
N11 |
HN11 |
HN1A |
120.0 |
180.0 |
| C10 |
N11 |
HN1A |
HN11 |
240.0 |
180.0 |