PDB Chemical Component B2D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B2D

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N1	C4	1.395	1.375
N1	C11	1.398	1.351
N1	N2	1.241	1.396
N3	C4	1.334	1.322
N3	N4	1.239	1.288
C4	C3	1.389	1.407
C5	C6	1.399	1.394
C5	C10	1.397	1.393
C5	C1	1.398	1.483
C6	C7	1.393	1.380
C7	C8	1.395	1.383
C8	C9	1.396	1.383
C10	C9	1.394	1.381
C13	C17	1.393	1.416
C13	C14	1.397	1.386
C13	N5	1.344	1.387
C15	N6	1.333	1.314
C15	C14	1.398	1.388
C17	N7	1.343	1.334
C17	C16	1.400	1.416
C20	C19	1.395	1.398
C20	N7	1.323	1.311
C21	O1	1.446	1.429
O1	C19	1.373	1.358
C19	C18	1.399	1.370
C18	C16	1.398	1.408
C16	N6	1.349	1.337
N5	C12	1.474	1.464
C12	C11	1.532	1.508
C11	N4	1.335	1.310
N2	C1	1.354	1.315
C3	C2	1.388	1.360
C2	C1	1.399	1.412
C6	H6	1.080	1.080
C7	H7	1.080	1.081
C8	H8	1.081	1.080
C10	H10	1.080	1.079
C15	H15	1.080	1.080
C20	H20	1.080	1.080
C21	H21	1.100	1.090
C21	H21A	1.101	1.091
C21	H21B	1.100	1.089
C18	H18	1.080	1.080
C14	H14	1.080	1.081
N5	HN5	1.000	0.970
C12	H12	1.101	1.090
C12	H12A	1.100	1.089
C3	H3	1.080	1.080
C2	H2	1.081	1.080
C9	H9	1.080	1.080

Bond Angles for B2D

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	N1	C11	103.0	106.0
C4	N1	N2	122.4	120.1
N1	C4	N3	107.5	106.8
N1	C4	C3	119.5	119.4
C11	N1	N2	134.6	133.9
N1	C11	C12	123.8	126.2
N1	C11	N4	107.9	107.7
N1	N2	C1	122.0	120.5
C4	N3	N4	111.3	109.3
N3	C4	C3	133.0	133.8
N3	N4	C11	110.3	110.2
C4	C3	C2	117.3	119.2
C4	C3	H3	121.3	120.4
C6	C5	C10	119.4	119.8
C6	C5	C1	120.3	120.1
C5	C6	C7	120.5	119.9
C5	C6	H6	119.7	120.1
C10	C5	C1	120.4	120.1
C5	C10	C9	120.2	119.9
C5	C10	H10	119.9	120.1
C5	C1	N2	120.8	119.6
C5	C1	C2	119.4	119.6
C6	C7	C8	119.7	120.2
C7	C6	H6	119.7	120.1
C6	C7	H7	120.1	119.9
C7	C8	C9	120.0	120.2
C8	C7	H7	120.1	119.9
C7	C8	H8	120.0	119.9
C8	C9	C10	120.1	120.1
C9	C8	H8	120.0	119.9
C8	C9	H9	119.9	119.9
C9	C10	H10	119.9	120.0
C10	C9	H9	120.0	119.9
C17	C13	C14	118.3	117.9
C17	C13	N5	118.7	121.1
C13	C17	N7	119.5	121.1
C13	C17	C16	120.0	118.7
C14	C13	N5	123.1	121.0
C13	C14	C15	119.4	119.8
C13	C14	H14	120.3	120.1
C13	N5	C12	124.0	120.0
C13	N5	HN5	104.9	119.9
N6	C15	C14	120.9	121.7
C15	N6	C16	121.5	121.7
N6	C15	H15	119.6	119.1
C14	C15	H15	119.5	119.2
C15	C14	H14	120.3	120.1
N7	C17	C16	120.4	120.3
C17	N7	C20	121.4	121.4
C17	C16	C18	119.1	118.7
C17	C16	N6	119.9	120.2
C19	C20	N7	121.6	121.5
C20	C19	O1	117.4	120.1
C20	C19	C18	118.7	119.8
C19	C20	H20	119.2	119.3
N7	C20	H20	119.2	119.2
C21	O1	C19	117.4	117.0
O1	C21	H21	109.5	109.5
O1	C21	H21A	109.5	109.4
O1	C21	H21B	109.5	109.5
O1	C19	C18	123.9	120.1
C19	C18	C16	118.8	118.2
C19	C18	H18	120.6	120.9
C18	C16	N6	121.0	121.1
C16	C18	H18	120.6	120.9
N5	C12	C11	110.4	109.4
C12	N5	HN5	104.9	120.1
N5	C12	H12	109.2	109.4
N5	C12	H12A	109.2	109.5
C12	C11	N4	128.2	126.1
C11	C12	H12	109.1	109.4
C11	C12	H12A	109.1	109.5
N2	C1	C2	119.8	120.7
C3	C2	C1	119.1	120.1
C2	C3	H3	121.4	120.4
C3	C2	H2	120.5	120.0
C1	C2	H2	120.5	119.9
H21	C21	H21A	109.5	109.4
H21	C21	H21B	109.5	109.5
H21A	C21	H21B	109.5	109.5
H12	C12	H12A	109.8	109.6

Torsion Angles for B2D

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C11	N1	C4	N2	180.0	180.3
C4	N1	C11	C12	180.3	180.0
C4	N1	C11	N4	359.9	0.0
C4	N1	N2	C1	0.0	360.0
N1	C4	N3	N4	0.1	359.9
N3	C4	N1	C3	179.9	180.0
N1	C4	C3	C2	359.9	0.0
N1	C4	C3	H3	179.9	180.0
C4	N1	C11	N2	180.0	179.7
C11	N1	C4	N3	0.0	0.0
C11	N1	C4	C3	180.2	180.0
C11	N1	N2	C1	180.0	179.6
N3	N4	C11	N1	0.2	359.9
N5	C12	C11	N1	319.4	90.0
C12	C11	N1	N4	180.4	180.0
N1	C11	C12	H12	199.4	330.1
N1	C11	C12	H12A	79.4	210.0
C4	N1	N2	C11	180.1	180.3
N2	N1	C4	N3	180.0	179.8
N2	N1	C4	C3	0.1	359.7
N2	N1	C11	C12	0.3	0.3
N2	N1	C11	N4	179.9	180.3
C5	C1	N2	N1	180.3	180.0
N1	N2	C1	C2	359.7	0.5
N3	C4	N1	C11	0.0	0.0
N3	C4	N1	N2	180.0	179.8
N1	C4	N3	C3	180.1	180.0
C4	N3	N4	C11	359.8	0.1
N3	C4	C3	C2	180.1	180.0
N3	C4	C3	H3	0.1	359.9
N1	C11	N4	N3	0.2	359.9
N4	N3	C4	C3	179.9	180.0
C12	C11	N4	N3	179.7	180.0
C3	C4	N1	C11	180.2	180.0
C3	C4	N1	N2	0.1	359.7
N1	C4	C3	N3	179.9	180.0
C3	C4	N3	N4	179.9	180.0
C4	C3	C2	C1	359.8	0.5
C2	C3	C4	H3	180.0	180.1
C4	C3	C2	H2	179.8	180.0
C10	C5	C6	C1	179.8	180.2
C6	C5	C10	C9	360.0	0.0
C6	C5	C10	H10	180.0	180.0
C6	C5	C1	N2	193.9	360.0
C6	C5	C1	C2	14.5	179.5
C5	C6	C7	C8	0.2	0.1
C7	C6	C5	H6	180.0	179.9
C5	C6	C7	H7	180.2	180.0
C6	C5	C10	C1	180.2	179.8
C10	C5	C6	C7	359.9	359.9
C10	C5	C6	H6	179.9	180.0
C10	C5	C1	N2	14.2	179.8
C10	C5	C1	C2	194.7	359.3
C8	C9	C10	C5	0.0	0.0
C9	C10	C5	H10	180.0	180.0
C5	C10	C9	H9	180.0	180.0
N1	N2	C1	C5	180.3	180.0
C6	C5	C1	C10	179.7	180.2
C1	C5	C6	C7	180.2	179.7
C1	C5	C6	H6	0.2	359.8
C1	C5	C10	C9	179.7	180.2
C1	C5	C10	H10	359.7	0.2
N2	C1	C5	C2	179.5	180.5
C3	C2	C1	C5	179.8	179.8
C5	C1	C2	H2	359.8	0.3
C7	C6	C5	C10	359.9	359.9
C7	C6	C5	C1	180.2	179.7
C5	C6	C7	H6	180.0	180.1
C6	C7	C8	C9	359.9	0.0
C8	C7	C6	H7	180.0	180.0
C6	C7	C8	H8	179.9	179.9
C8	C7	C6	H6	180.2	180.0
C6	C7	C8	H7	180.0	180.0
C7	C8	C9	C10	0.0	360.0
C9	C8	C7	H8	180.0	180.1
C7	C8	C9	H9	180.0	180.0
C5	C10	C9	C8	0.0	0.0
C9	C8	C7	H7	179.9	180.0
C7	C8	C9	H8	180.0	179.9
C8	C9	C10	H10	180.0	180.0
C10	C9	C8	H9	180.0	180.0
C9	C10	C5	C1	179.7	180.2
C5	C10	C9	H10	180.0	180.0
C10	C9	C8	H8	180.0	180.0
C8	C9	C10	H9	180.0	180.0
C14	C13	C17	N5	180.6	180.3
C17	C13	C14	C15	359.3	0.0
C17	C13	C14	H14	179.3	180.0
C17	C13	N5	C12	175.2	180.0
C17	C13	N5	HN5	295.2	0.0
N7	C17	C13	C16	180.0	180.0
C13	C17	N7	C20	180.2	180.0
C13	C17	C16	C18	179.7	180.0
C13	C17	C16	N6	0.3	360.0
C17	C13	C14	N5	179.4	179.7
C14	C13	C17	N7	180.1	180.0
C14	C13	C17	C16	0.1	0.0
C14	C13	N5	C12	354.6	359.7
C14	C13	N5	HN5	114.6	179.7
N6	C15	C14	C13	0.8	359.9
C13	C14	C15	H15	180.8	179.9
C15	C14	C13	H14	180.0	180.0
C17	C13	N5	C14	180.6	180.3
N5	C13	C17	N7	359.6	359.7
N5	C13	C17	C16	179.6	179.7
N5	C13	C14	C15	179.9	180.3
N5	C13	C14	H14	359.9	0.3
C13	N5	C12	C11	277.1	180.0
C12	N5	C13	HN5	240.0	180.0
C13	N5	C12	H12	37.1	299.9
C13	N5	C12	H12A	157.2	60.0
C13	C14	C15	N6	0.8	359.9
C14	C15	N6	H15	180.0	180.0
N6	C15	C14	H14	180.8	179.9
C17	C16	N6	C15	359.9	360.0
C18	C16	N6	C15	180.5	179.9
C15	C14	C13	N5	179.9	180.3
C13	C14	C15	H14	180.0	180.0
C14	C15	N6	C16	359.6	0.1
N6	C15	C14	H15	180.0	180.0
N7	C17	C13	C14	180.1	180.0
N7	C17	C13	N5	359.6	359.7
C13	C17	N7	C16	180.0	180.0
N7	C17	C16	C18	359.7	0.0
N7	C17	C16	N6	180.3	180.0
C19	C20	N7	C17	359.9	0.0
C17	N7	C20	H20	179.9	180.1
C16	C17	C13	C14	0.1	0.0
C16	C17	C13	N5	179.6	179.7
C13	C17	C16	N7	180.0	180.0
C15	N6	C16	C17	359.9	360.0
C16	C17	N7	C20	0.2	360.0
C19	C18	C16	C17	0.3	0.0
C18	C16	C17	N6	179.4	180.1
C17	C16	C18	H18	180.3	180.0
C17	N7	C20	C19	359.9	0.0
N7	C20	C19	H20	180.0	180.0
C21	O1	C19	C20	184.0	360.0
O1	C19	C20	C18	179.9	180.0
C20	C19	C18	C16	359.8	360.0
C20	C19	C18	H18	179.8	180.0
C20	N7	C17	C16	0.2	360.0
N7	C20	C19	O1	180.0	180.0
N7	C20	C19	C18	0.1	0.0
C19	C20	N7	H20	180.0	180.0
C20	C19	O1	C21	184.0	360.0
C21	O1	C19	C18	3.9	180.0
H21	C21	O1	H21A	240.0	240.1
H21	C21	O1	H21B	120.0	120.1
H21A	C21	O1	H21B	240.0	240.0
O1	C19	C20	N7	180.0	180.0
C20	C19	O1	C18	180.1	180.0
O1	C19	C20	H20	0.0	360.0
C19	O1	C21	H21	180.0	300.1
C19	O1	C21	H21A	300.0	60.0
C19	O1	C21	H21B	60.0	180.0
O1	C19	C18	C16	179.9	180.0
O1	C19	C18	H18	359.9	0.0
C17	C16	C18	C19	0.3	0.0
C18	C19	C20	N7	0.1	0.0
C20	C19	C18	O1	179.9	180.0
C18	C19	C20	H20	180.1	180.0
C19	C18	C16	N6	179.7	180.1
C16	C18	C19	H18	180.0	180.0
C15	N6	C16	C18	180.5	179.9
C17	C16	C18	N6	180.6	179.9
C19	C18	C16	H18	180.0	180.0
C16	N6	C15	C14	359.6	0.1
C16	N6	C15	H15	179.6	180.0
C17	C16	N6	C18	179.4	180.1
N6	C16	C18	H18	359.7	0.1
N1	C11	C12	N5	319.4	90.0
C13	N5	C12	HN5	120.0	180.0
N5	C12	C11	N4	139.9	269.9
C11	C12	N5	H12	240.0	240.1
C11	C12	N5	H12A	120.0	120.0
H12	C12	N5	H12A	240.0	239.9
C12	C11	N1	N2	0.3	0.3
N1	C11	C12	N4	179.5	180.0
N3	N4	C11	C12	179.7	180.0
C11	C12	N5	HN5	157.2	0.0
N5	C12	C11	H12	120.0	119.9
N5	C12	C11	H12A	240.0	240.0
H12	C12	C11	H12A	120.0	120.1
N4	C11	N1	N2	179.9	180.3
N1	C11	N4	C12	180.5	180.0
N4	C11	C12	H12	19.9	150.0
N4	C11	C12	H12A	259.9	30.0
C5	C1	N2	C2	180.5	179.5
C3	C2	C1	N2	0.3	359.3
N2	C1	C2	H2	180.3	179.8
C4	C3	C2	H3	180.0	179.9
C5	C1	C2	C3	179.8	179.8
N2	C1	C2	C3	0.3	359.3
C1	C2	C3	H2	180.0	180.5
C5	C1	C2	N2	179.5	180.5
C1	C2	C3	H3	179.8	180.5
C3	C2	C1	H2	180.0	179.5
H6	C6	C5	C10	179.9	180.0
H6	C6	C5	C1	0.2	359.8
C5	C6	H6	C7	180.0	179.9
H6	C6	C7	C8	180.2	180.0
H6	C6	C7	H7	0.2	360.0
C6	C7	H7	C8	180.0	180.0
H7	C7	C6	H6	0.2	360.0
H7	C7	C8	C9	179.9	180.0
H7	C7	C8	H8	359.9	360.0
C7	C8	H8	C9	180.0	180.1
H8	C8	C7	H7	359.9	360.0
H8	C8	C9	C10	180.0	180.0
H8	C8	C9	H9	0.0	0.0
H10	C10	C5	C1	359.7	0.2
C5	C10	H10	C9	180.0	180.0
H10	C10	C9	H9	0.0	0.0
N6	C15	H15	C14	180.0	180.0
H15	C15	N6	C16	179.6	180.0
H15	C15	C14	H14	0.8	360.0
C19	C20	H20	N7	180.0	180.0
H20	C20	C19	O1	0.0	360.0
H20	C20	C19	C18	180.1	180.0
H21	C21	O1	C19	180.0	300.1
O1	C21	H21	H21A	120.0	119.9
O1	C21	H21	H21B	240.0	239.9
H21A	C21	H21	H21B	120.0	120.0
H21A	C21	O1	C19	300.0	60.0
O1	C21	H21A	H21	240.0	240.1
O1	C21	H21A	H21B	120.0	120.1
H21	C21	H21A	H21B	240.0	240.0
H21B	C21	O1	C19	60.0	180.0
O1	C21	H21B	H21	120.0	120.1
O1	C21	H21B	H21A	240.0	240.0
H21	C21	H21B	H21A	120.0	120.0
C19	C18	H18	C16	180.0	180.0
H18	C18	C16	N6	359.7	0.1
H14	C14	C13	N5	359.9	0.3
C13	C14	H14	C15	180.0	180.0
H14	C14	C15	H15	0.8	360.0
C13	N5	HN5	C12	228.0	180.0
HN5	N5	C12	C11	157.2	0.0
HN5	N5	C12	H12	277.2	119.9
HN5	N5	C12	H12A	37.2	240.0
N5	C12	H12	C11	239.2	240.1
H12	C12	N5	HN5	277.2	119.9
N5	C12	H12	H12A	119.6	120.1
H12	C12	C11	N4	19.9	150.0
C11	C12	H12	H12A	240.4	240.0
N5	C12	H12A	C11	120.8	120.0
H12A	C12	N5	HN5	37.2	240.0
N5	C12	H12A	H12	240.4	239.9
H12A	C12	C11	N4	259.9	30.0
C11	C12	H12A	H12	119.6	120.0
C4	C3	H3	C2	180.0	180.1
H3	C3	C2	C1	179.8	180.5
H3	C3	C2	H2	359.8	0.0
C3	C2	H2	C1	180.0	180.5
H2	C2	C3	H3	359.8	0.0
C8	C9	H9	C10	180.0	180.0
H9	C9	C8	H8	0.0	0.0
H9	C9	C10	H10	0.0	0.0