Atom Nomenclature for B1S

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for B1S

Atom Name (V3) Atom Name (V2)
C7 C1
O8 O1
C9 C2
O10 O2
C1 C3
C2 C4
C3 C5
C4 C6
C5 C7
C6 C8
N11 N1
C12 C9
C17 C10
O18 O3
C13 C11
C14 C12
C15 C13
C16 C14
N19 N2
C20 C15
C21 C16
O22 O4
C24 C17
C25 C18
C26 C19
C27 C20
N28 N3
C29 C21
O30 O5
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
S1 S1
O1 O6
O3 O7
O2 O8
H22 H22