PDB Chemical Component B17

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B17

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
S N 1.570 1.656
S O1 1.466 1.420
S O2 1.442 1.421
S C4 1.779 1.762
N HN1 1.000 0.971
N HN2 1.000 0.970
C1 C2 1.356 1.395
C1 C6 1.400 1.396
C1 C7 1.502 1.479
C2 C3 1.393 1.380
C2 H2 1.080 1.080
C3 C4 1.382 1.383
C3 H3 1.080 1.081
C4 C5 1.382 1.384
C5 C6 1.360 1.379
C5 H5 1.080 1.080
C6 H6 1.080 1.080
C7 O7 1.221 1.215
C7 N8 1.338 1.348
N8 C9 1.489 1.464
N8 HN8 1.000 0.970
C9 C10 1.556 1.530
C9 H91 1.100 1.090
C9 H92 1.100 1.090
C10 O11 1.408 1.429
C10 H101 1.100 1.090
C10 H102 1.100 1.090
O11 C12 1.418 1.429
C12 C13 1.501 1.530
C12 H121 1.100 1.090
C12 H122 1.100 1.090
C13 O14 1.403 1.429
C13 H131 1.100 1.090
C13 H132 1.100 1.090
O14 C15 1.432 1.429
C15 C8   1.530
C15 H152 1.100 1.090
C15 H153 1.100 1.089
C8 N1   1.469
C8 H81   1.090
C8 H82   1.090
N1 C11   1.448
N1 C16   1.476
C11 C14   1.532
C11 H111   1.090
C11 H112   1.090
C14 O3   1.401
C14 O4   1.208
O3 CU1   1.532
C16 C17   1.532
C16 H161   1.091
C16 H162   1.091
C17 O5   1.424
C17 O6   1.208
O5 CU1   1.502

Bond Angles for B17

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N S O1 109.8 106.4
N S O2 110.4 106.4
N S C4 107.3 107.2
S N HN1 109.5 120.0
S N HN2 109.5 120.1
O1 S O2 118.4 123.2
O1 S C4 104.9 106.4
O2 S C4 105.3 106.4
S C4 C3 120.2 119.9
S C4 C5 120.1 119.8
HN1 N HN2 109.4 119.9
C2 C1 C6 118.7 119.7
C2 C1 C7 117.8 120.1
C1 C2 C3 121.4 119.8
C1 C2 H2 119.3 120.1
C6 C1 C7 123.4 120.1
C1 C6 C5 120.5 119.8
C1 C6 H6 119.8 120.1
C1 C7 O7 121.9 120.0
C1 C7 N8 118.3 120.0
C3 C2 H2 119.3 120.0
C2 C3 C4 119.1 120.2
C2 C3 H3 120.4 119.9
C4 C3 H3 120.5 119.9
C3 C4 C5 119.6 120.3
C4 C5 C6 120.5 120.2
C4 C5 H5 119.8 119.9
C6 C5 H5 119.7 119.9
C5 C6 H6 119.7 120.1
O7 C7 N8 119.3 120.0
C7 N8 C9 122.2 120.0
C7 N8 HN8 118.9 120.0
C9 N8 HN8 118.9 120.0
N8 C9 C10 108.8 109.5
N8 C9 H91 109.6 109.5
N8 C9 H92 109.6 109.4
C10 C9 H91 109.6 109.4
C10 C9 H92 109.6 109.4
C9 C10 O11 114.9 109.5
C9 C10 H101 108.1 109.5
C9 C10 H102 108.1 109.5
H91 C9 H92 109.5 109.5
O11 C10 H101 108.1 109.5
O11 C10 H102 108.1 109.5
C10 O11 C12 111.5 114.0
H101 C10 H102 109.4 109.4
O11 C12 C13 116.2 109.4
O11 C12 H121 107.8 109.4
O11 C12 H122 107.8 109.5
C13 C12 H121 107.8 109.5
C13 C12 H122 107.8 109.5
C12 C13 O14 121.8 109.5
C12 C13 H131 106.3 109.5
C12 C13 H132 106.3 109.5
H121 C12 H122 109.4 109.5
O14 C13 H131 106.3 109.4
O14 C13 H132 106.3 109.5
C13 O14 C15 111.1 114.0
H131 C13 H132 109.5 109.5
O14 C15 C8   109.5
O14 C15 H152 107.7 109.4
O14 C15 H153 107.7 109.5
C8 C15 H152   109.5
C8 C15 H153   109.5
C15 C8 N1   109.5
C15 C8 H81   109.4
C15 C8 H82   109.4
H152 C15 H153 109.4 109.5
N1 C8 H81   109.5
N1 C8 H82   109.5
C8 N1 C11   111.0
C8 N1 C16   111.0
H81 C8 H82   109.5
C11 N1 C16   106.8
N1 C11 C14   110.2
N1 C11 H111   109.3
N1 C11 H112   109.3
N1 C16 C17   115.5
N1 C16 H161   108.3
N1 C16 H162   108.3
C14 C11 H111   109.4
C14 C11 H112   109.4
C11 C14 O3   106.3
C11 C14 O4   126.9
H111 C11 H112   109.2
O3 C14 O4   126.8
C14 O3 CU1   93.5
O3 CU1 O5   174.1
C17 C16 H161   108.3
C17 C16 H162   108.3
C16 C17 O5   110.0
C16 C17 O6   125.0
H161 C16 H162   107.9
O5 C17 O6   125.0
C17 O5 CU1   107.5

Torsion Angles for B17

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1 S N O2 132.3 227.0
O1 S N C4 246.6 113.5
O2 S N C4 114.3 246.5
N S C4 C3 131.3 90.0
N S C4 C5 310.7 269.9
HN1 N S HN2 240.0 180.0
N S O1 O2 232.0 123.0
N S O1 C4 115.0 246.0
O1 S N HN1 180.0 113.5
O1 S N HN2 300.0 293.5
O2 S O1 C4 243.0 123.0
O1 S C4 C3 248.0 336.5
O1 S C4 C5 67.4 156.4
N S O2 O1 127.7 237.0
N S O2 C4 244.5 114.1
O2 S N HN1 47.7 246.4
O2 S N HN2 167.7 66.5
O1 S O2 C4 116.8 237.0
O2 S C4 C3 13.6 203.5
O2 S C4 C5 193.1 23.5
N S C4 O1 243.3 113.5
N S C4 O2 117.6 246.5
C4 S N HN1 293.4 360.0
C4 S N HN2 53.4 180.0
O1 S C4 O2 234.3 133.0
C2 C3 C4 S 179.7 180.0
S C4 C3 H3 359.7 360.0
C3 C4 S C5 180.5 180.1
S C4 C5 C6 180.0 180.0
S C4 C5 H5 0.0 360.0
HN1 N S O1 180.0 113.5
HN1 N S O2 47.7 246.4
HN1 N S C4 293.4 360.0
S N HN1 HN2 120.0 180.0
HN2 N S O1 300.0 293.5
HN2 N S O2 167.7 66.5
HN2 N S C4 53.4 180.0
S N HN2 HN1 240.0 180.0
C6 C1 C2 C7 180.2 180.3
C2 C1 C6 C5 359.5 360.0
C2 C1 C6 H6 179.5 180.0
C2 C1 C7 O7 11.8 0.0
C2 C1 C7 N8 183.9 180.0
C3 C2 C1 H2 180.0 180.0
C1 C2 C3 C4 359.9 0.0
C1 C2 C3 H3 179.8 180.0
C2 C1 C6 C7 179.8 179.7
C6 C1 C2 C3 0.3 360.0
C6 C1 C2 H2 180.3 180.0
C6 C1 C7 O7 191.6 179.7
C6 C1 C7 N8 3.6 359.7
C4 C5 C6 C1 0.6 0.0
C1 C6 C5 H5 180.6 180.1
C5 C6 C1 H6 180.0 180.0
C2 C1 C7 C6 180.2 180.3
C7 C1 C2 C3 180.0 179.7
C7 C1 C2 H2 0.1 359.7
C7 C1 C6 C5 179.7 180.3
C7 C1 C6 H6 359.7 0.3
O7 C7 C1 N8 187.9 180.1
C1 C7 N8 C9 187.7 180.0
C1 C7 N8 HN8 7.7 0.1
S C4 C3 C2 179.7 180.0
C3 C2 C1 C6 0.3 360.0
C3 C2 C1 C7 180.0 179.7
C1 C2 C3 H2 180.0 180.0
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 0.2 0.0
H2 C2 C1 C6 180.3 180.0
H2 C2 C1 C7 0.1 359.7
C1 C2 H2 C3 180.0 180.0
H2 C2 C3 C4 179.9 180.0
H2 C2 C3 H3 359.8 360.0
S C4 C3 C5 179.5 179.9
C4 C3 C2 H2 179.9 180.0
C2 C3 C4 H3 180.0 180.0
C3 C4 C5 C6 359.5 359.9
C3 C4 C5 H5 179.5 179.9
H3 C3 C2 H2 359.8 360.0
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 180.3 180.0
S C4 C5 C3 180.5 180.1
C1 C6 C5 C4 0.6 0.0
C5 C4 C3 H3 180.3 180.0
C6 C5 C4 H5 180.0 180.0
C4 C5 C6 H6 180.6 180.1
C5 C6 C1 C7 179.7 180.3
C1 C6 C5 H6 180.0 180.0
C4 C5 C6 H5 180.0 180.0
C4 C5 H5 C6 180.0 180.0
H5 C5 C6 H6 0.6 0.1
H6 C6 C1 C7 359.7 0.3
C1 C6 H6 C5 180.0 180.0
H6 C6 C5 H5 0.6 0.1
C1 C7 O7 N8 172.0 179.9
O7 C7 N8 C9 360.0 359.9
O7 C7 N8 HN8 180.0 180.0
C1 C7 N8 O7 187.7 180.1
C9 N8 C7 HN8 180.0 179.9
C7 N8 C9 C10 81.7 180.0
C7 N8 C9 H91 201.5 300.0
C7 N8 C9 H92 321.8 60.1
C7 N8 C9 HN8 180.0 180.1
C10 C9 N8 H91 240.1 240.0
C10 C9 N8 H92 119.9 119.9
N8 C9 C10 O11 180.4 65.0
N8 C9 C10 H101 301.3 185.0
N8 C9 C10 H102 59.6 305.0
H91 C9 N8 H92 239.8 240.0
C7 N8 HN8 C9 180.0 179.9
HN8 N8 C9 C10 261.7 359.9
HN8 N8 C9 H91 21.5 120.0
HN8 N8 C9 H92 141.8 240.0
C10 C9 N8 HN8 261.7 359.9
N8 C9 C10 H91 119.9 120.1
N8 C9 C10 H92 240.1 240.1
H91 C9 C10 H92 120.2 120.0
O11 C10 C9 H101 239.2 240.0
O11 C10 C9 H102 120.8 120.0
C9 C10 O11 C12 172.1 180.0
H101 C10 C9 H102 241.6 240.0
H91 C9 N8 HN8 21.5 120.0
N8 C9 H91 C10 240.6 239.9
N8 C9 H91 H92 120.3 120.0
C10 C9 H91 H92 239.7 240.1
H91 C9 C10 O11 60.5 304.9
H91 C9 C10 H101 181.4 65.0
H91 C9 C10 H102 299.7 185.0
H92 C9 N8 HN8 141.8 240.0
N8 C9 H92 C10 119.4 120.0
N8 C9 H92 H91 239.7 239.9
C10 C9 H92 H91 120.3 119.9
H92 C9 C10 O11 300.3 185.0
H92 C9 C10 H101 61.2 305.0
H92 C9 C10 H102 179.5 65.0
O11 C10 C9 H91 60.5 304.9
O11 C10 C9 H92 300.3 185.0
C9 C10 O11 H101 120.8 120.0
C9 C10 O11 H102 239.2 240.0
H101 C10 O11 H102 118.4 120.0
C10 O11 C12 C13 124.0 180.0
C10 O11 C12 H121 245.0 300.0
C10 O11 C12 H122 3.0 60.0
H101 C10 C9 H91 181.4 65.0
H101 C10 C9 H92 61.2 305.0
C9 C10 H101 O11 235.1 240.0
C9 C10 H101 H102 117.5 120.0
O11 C10 H101 H102 242.4 240.0
H101 C10 O11 C12 51.3 60.0
H102 C10 C9 H91 299.7 185.0
H102 C10 C9 H92 179.5 65.0
C9 C10 H102 O11 124.9 120.0
C9 C10 H102 H101 242.5 240.0
O11 C10 H102 H101 117.6 120.0
H102 C10 O11 C12 292.9 300.0
C12 O11 C10 H101 51.3 60.0
C12 O11 C10 H102 292.9 300.0
C13 C12 O11 H121 239.0 240.0
C13 C12 O11 H122 121.0 120.0
O11 C12 C13 O14 58.4 65.0
O11 C12 C13 H131 180.1 184.9
O11 C12 C13 H132 296.7 305.0
H121 C12 O11 H122 242.0 240.0
O11 C12 C13 H121 121.0 119.9
O11 C12 C13 H122 239.0 240.0
H121 C12 C13 H122 118.0 120.1
O14 C13 C12 H131 238.3 240.0
O14 C13 C12 H132 121.7 120.0
C12 C13 O14 C15 10.5 180.0
H131 C13 C12 H132 243.4 240.0
O11 C12 H121 C13 233.9 240.1
O11 C12 H121 H122 117.0 120.0
C13 C12 H121 H122 243.1 239.9
H121 C12 C13 O14 297.4 305.0
H121 C12 C13 H131 59.1 65.0
H121 C12 C13 H132 175.7 185.1
O11 C12 H122 C13 126.1 120.0
O11 C12 H122 H121 243.0 240.0
C13 C12 H122 H121 116.9 120.0
H122 C12 C13 O14 179.4 185.0
H122 C12 C13 H131 301.1 305.0
H122 C12 C13 H132 57.7 65.0
O14 C13 C12 H121 297.4 305.0
O14 C13 C12 H122 179.4 185.0
C12 C13 O14 H131 121.7 120.0
C12 C13 O14 H132 238.3 240.0
H131 C13 O14 H132 116.6 120.0
C13 O14 C15 C8   180.0
C13 O14 C15 H152 29.3 300.0
C13 O14 C15 H153 147.3 60.0
H131 C13 C12 H121 59.1 65.0
H131 C13 C12 H122 301.1 305.0
C12 C13 H131 O14 228.9 240.0
C12 C13 H131 H132 114.5 120.0
O14 C13 H131 H132 245.6 240.0
H131 C13 O14 C15 248.8 60.0
H132 C13 C12 H121 175.7 185.1
H132 C13 C12 H122 57.7 65.0
C12 C13 H132 O14 131.1 120.0
C12 C13 H132 H131 245.6 240.0
O14 C13 H132 H131 114.5 120.0
H132 C13 O14 C15 132.2 300.0
C15 O14 C13 H131 248.8 60.0
C15 O14 C13 H132 132.2 300.0
C8 C15 O14 H152   240.0
C8 C15 O14 H153   120.0
O14 C15 C8 N1   65.0
O14 C15 C8 H81   185.0
O14 C15 C8 H82   305.0
H152 C15 O14 H153 242.0 240.0
O14 C15 C8 H152   120.0
O14 C15 C8 H153   240.0
H152 C15 C8 H153   120.0
N1 C8 C15 H81   240.0
N1 C8 C15 H82   120.0
C15 C8 N1 C11   170.0
C15 C8 N1 C16   288.5
H81 C8 C15 H82   240.0
O14 C15 H152 C8   240.0
O14 C15 H152 H153 116.9 120.0
C8 C15 H152 H153   240.0
H152 C15 C8 N1   305.0
H152 C15 C8 H81   65.0
H152 C15 C8 H82   185.0
O14 C15 H153 C8   120.0
O14 C15 H153 H152 243.1 240.0
C8 C15 H153 H152   120.0
H153 C15 C8 N1   185.0
H153 C15 C8 H81   305.0
H153 C15 C8 H82   65.0
N1 C8 C15 H152   305.0
N1 C8 C15 H153   185.0
C15 C8 N1 H81   120.0
C15 C8 N1 H82   240.0
H81 C8 N1 H82   120.1
C11 N1 C8 C16   241.5
C8 N1 C11 C14   162.8
C8 N1 C11 H111   283.0
C8 N1 C11 H112   42.5
C8 N1 C16 C17   323.6
C8 N1 C16 H161   85.2
C8 N1 C16 H162   202.0
H81 C8 C15 H152   65.0
H81 C8 C15 H153   305.0
C15 C8 H81 N1   240.0
C15 C8 H81 H82   119.9
N1 C8 H81 H82   239.9
H81 C8 N1 C11   50.0
H81 C8 N1 C16   168.6
H82 C8 C15 H152   185.0
H82 C8 C15 H153   65.0
C15 C8 H82 N1   120.0
C15 C8 H82 H81   240.1
N1 C8 H82 H81   120.1
H82 C8 N1 C11   290.0
H82 C8 N1 C16   48.5
C11 N1 C8 H81   50.0
C11 N1 C8 H82   290.0
C8 N1 C11 C16   121.0
C11 N1 C16 C17   84.7
C11 N1 C16 H161   206.3
C11 N1 C16 H162   323.1
C14 C11 N1 H111   239.8
C14 C11 N1 H112   120.3
N1 C11 C14 O3   236.2
N1 C11 C14 O4   56.2
H111 C11 N1 H112   240.5
C16 N1 C8 H81   168.6
C16 N1 C8 H82   48.5
C8 N1 C16 C11   239.0
C16 N1 C11 C14   41.8
C16 N1 C11 H111   162.0
C16 N1 C11 H112   281.5
C17 C16 N1 H161   238.4
C17 C16 N1 H162   121.6
N1 C16 C17 O5   304.0
N1 C16 C17 O6   124.0
H161 C16 N1 H162   243.2
C14 C11 N1 C16   41.8
N1 C11 C14 H111   120.2
N1 C11 C14 H112   239.7
H111 C11 C14 H112   119.6
O3 C14 C11 O4   180.0
C11 C14 O3 CU1   44.8
H111 C11 N1 C16   162.0
N1 C11 H111 C14   239.3
N1 C11 H111 H112   119.6
C14 C11 H111 H112   240.3
H111 C11 C14 O3   116.1
H111 C11 C14 O4   296.1
H112 C11 N1 C16   281.5
N1 C11 H112 C14   120.8
N1 C11 H112 H111   240.4
C14 C11 H112 H111   119.7
H112 C11 C14 O3   356.5
H112 C11 C14 O4   176.5
O3 C14 C11 H111   116.1
O3 C14 C11 H112   356.5
C11 C14 O3 O4   180.0
C14 O3 CU1 O5   3.3
O4 C14 C11 H111   296.1
O4 C14 C11 H112   176.5
C11 C14 O4 O3   180.0
O4 C14 O3 CU1   224.8
CU1 O3 C14 O4   224.8
C17 O5 CU1 O3   37.6
N1 C16 C17 H161   121.6
N1 C16 C17 H162   238.4
H161 C16 C17 H162   116.8
O5 C17 C16 O6   180.0
C16 C17 O5 CU1   328.9
N1 C16 H161 C17   234.1
N1 C16 H161 H162   117.0
C17 C16 H161 H162   243.0
H161 C16 C17 O5   182.4
H161 C16 C17 O6   2.4
N1 C16 H162 C17   125.9
N1 C16 H162 H161   243.0
C17 C16 H162 H161   117.0
H162 C16 C17 O5   65.6
H162 C16 C17 O6   245.6
O3 CU1 O5 C17   37.6
O5 C17 C16 H161   182.4
O5 C17 C16 H162   65.6
C16 C17 O5 O6   180.0
O6 C17 C16 H161   2.4
O6 C17 C16 H162   245.6
C16 C17 O6 O5   180.0
O6 C17 O5 CU1   148.9
CU1 O5 C17 O6   148.9