PDB Chemical Component B09

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for B09

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	S1	1.774	1.762
C1	C2	1.431	1.382
C1	C6	1.435	1.382
N1	S1	1.672	1.657
N1	O3	1.428	1.415
O1	S1	1.423	1.421
S1	O2	1.438	1.421
C2	C3	1.425	1.382
C3	C4	1.405	1.382
O3	C7	1.455	1.428
C4	C5	1.394	1.383
C5	C6	1.421	1.382
N1	HN1	1.000	0.970
C2	H2	1.080	1.081
C3	H3	1.080	1.080
C4	H4	1.080	1.080
C5	H5	1.080	1.080
C6	H6	1.080	1.080
C7	H7	1.100	1.090
C7	H7A	1.100	1.091
C7	H7B	1.100	1.090

Bond Angles for B09

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
S1	C1	C2	120.2	120.0
S1	C1	C6	118.6	120.0
C1	S1	N1	109.2	107.2
C1	S1	O1	111.4	106.4
C1	S1	O2	108.3	106.4
C2	C1	C6	121.1	120.0
C1	C2	C3	116.7	120.0
C1	C2	H2	121.6	120.0
C1	C6	C5	118.0	120.0
C1	C6	H6	121.0	120.0
S1	N1	O3	111.0	120.0
N1	S1	O1	106.1	106.4
N1	S1	O2	106.7	106.4
S1	N1	HN1	109.0	120.0
N1	O3	C7	108.9	114.0
O3	N1	HN1	109.0	120.0
O1	S1	O2	114.8	123.2
C2	C3	C4	123.8	120.0
C3	C2	H2	121.7	120.0
C2	C3	H3	118.1	120.0
C3	C4	C5	117.5	120.0
C4	C3	H3	118.1	120.0
C3	C4	H4	121.2	120.0
O3	C7	H7	109.5	109.5
O3	C7	H7A	109.5	109.5
O3	C7	H7B	109.5	109.5
C4	C5	C6	122.9	120.0
C5	C4	H4	121.3	120.0
C4	C5	H5	118.6	120.0
C6	C5	H5	118.6	120.0
C5	C6	H6	121.0	120.0
H7	C7	H7A	109.5	109.4
H7	C7	H7B	109.5	109.4
H7A	C7	H7B	109.5	109.5

Torsion Angles for B09

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	S1	C6	180.1	180.2
S1	C1	C2	C3	179.8	180.0
S1	C1	C2	H2	359.8	360.0
S1	C1	C6	C5	180.2	179.8
S1	C1	C6	H6	0.2	360.0
C1	S1	N1	O3	265.3	65.0
N1	S1	C1	O1	117.0	246.5
N1	S1	C1	O2	244.2	113.5
C1	S1	N1	HN1	25.3	245.0
O1	S1	C1	O2	127.2	227.0
S1	C1	C2	C6	179.9	179.8
C2	C1	S1	N1	247.3	90.0
C2	C1	S1	O1	130.3	203.5
C2	C1	S1	O2	3.1	336.5
C2	C1	C6	C5	0.1	359.6
C2	C1	C6	H6	180.0	179.7
C1	C2	C3	C4	360.0	359.9
C3	C2	C1	H2	180.0	180.0
C1	C2	C3	H3	180.0	180.0
S1	C1	C6	C2	180.1	180.2
C6	C1	S1	N1	67.1	269.7
C6	C1	S1	O1	310.2	23.2
C6	C1	S1	O2	183.0	156.2
C6	C1	C2	C3	360.0	0.3
C6	C1	C2	H2	179.9	180.2
C4	C5	C6	C1	0.0	0.4
C1	C6	C5	H5	180.0	180.3
C5	C6	C1	H6	180.0	179.8
N1	S1	C1	C2	247.3	90.0
N1	S1	C1	C6	67.1	269.7
C1	S1	N1	O1	239.8	113.5
C1	S1	N1	O2	116.9	246.5
S1	N1	O3	C7	113.6	180.0
O3	N1	S1	HN1	240.0	180.0
O1	S1	N1	O2	237.1	132.9
O3	N1	S1	O1	25.6	311.5
O3	N1	S1	O2	148.5	178.6
S1	N1	O3	HN1	120.0	180.0
N1	O3	C7	H7	180.0	300.0
N1	O3	C7	H7A	300.0	59.9
N1	O3	C7	H7B	60.0	180.0
O1	S1	C1	C2	130.3	203.5
O1	S1	C1	C6	310.2	23.2
C1	S1	O1	N1	118.8	245.9
C1	S1	O1	O2	236.4	123.0
O1	S1	N1	O3	25.6	311.5
N1	S1	O1	O2	117.6	237.1
O1	S1	N1	HN1	145.6	131.5
O2	S1	C1	C2	3.1	336.5
O2	S1	C1	C6	183.0	156.2
C1	S1	O2	N1	242.5	114.1
C1	S1	O2	O1	125.2	237.0
O2	S1	N1	O3	148.5	178.6
N1	S1	O2	O1	242.7	122.9
O2	S1	N1	HN1	268.5	358.5
C3	C2	C1	C6	360.0	0.3
C1	C2	C3	H2	180.0	180.0
C2	C3	C4	C5	0.1	0.0
C4	C3	C2	H3	180.0	180.0
C2	C3	C4	H4	180.1	180.0
C4	C3	C2	H2	180.0	180.0
C2	C3	C4	H3	180.0	180.0
C3	C4	C5	C6	359.9	359.8
C5	C4	C3	H4	180.0	180.1
C3	C4	C5	H5	179.9	179.9
C7	O3	N1	HN1	353.6	0.0
H7	C7	O3	H7A	240.0	240.1
H7	C7	O3	H7B	120.0	120.0
H7A	C7	O3	H7B	240.0	239.9
C1	C6	C5	C4	0.0	0.4
C5	C4	C3	H3	180.1	180.0
C3	C4	C5	H4	180.0	179.9
C6	C5	C4	H5	180.0	179.8
C4	C5	C6	H6	180.0	180.2
C1	C6	C5	H6	180.0	180.2
C6	C5	C4	H4	179.9	179.9
C4	C5	C6	H5	180.0	180.2
S1	N1	HN1	O3	238.8	180.0
HN1	N1	S1	O1	145.6	131.5
HN1	N1	S1	O2	268.5	358.5
HN1	N1	O3	C7	353.6	0.0
H2	C2	C1	C6	179.9	180.2
C1	C2	H2	C3	180.0	180.0
H2	C2	C3	C4	180.0	180.0
H2	C2	C3	H3	360.0	0.0
C2	C3	H3	C4	180.0	180.0
H3	C3	C2	H2	360.0	0.0
H3	C3	C4	C5	180.1	180.0
H3	C3	C4	H4	0.1	359.9
C3	C4	H4	C5	180.0	180.1
H4	C4	C3	H3	0.1	359.9
H4	C4	C5	C6	179.9	179.9
H4	C4	C5	H5	359.9	0.0
C4	C5	H5	C6	180.0	179.8
H5	C5	C4	H4	359.9	0.0
H5	C5	C6	H6	0.0	0.1
C1	C6	H6	C5	180.0	179.8
H6	C6	C5	H5	0.0	0.1
O3	C7	H7	H7A	120.0	120.0
O3	C7	H7	H7B	240.0	239.9
H7A	C7	H7	H7B	120.0	119.9
O3	C7	H7A	H7	240.0	240.0
O3	C7	H7A	H7B	120.0	120.1
H7	C7	H7A	H7B	240.0	240.1
O3	C7	H7B	H7	120.0	120.0
O3	C7	H7B	H7A	240.0	239.9
H7	C7	H7B	H7A	120.0	119.9