PDB Chemical Component B05
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B05
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| OAB |
NBA |
1.365 |
1.218 |
| CAN |
CAM |
1.378 |
1.383 |
| CAN |
CAW |
1.360 |
1.384 |
| CAM |
CAV |
1.372 |
1.380 |
| NBA |
CAW |
1.363 |
1.480 |
| NBA |
OAC |
1.376 |
1.218 |
| CAW |
CAP |
1.356 |
1.380 |
| CAV |
CAZ |
1.384 |
1.395 |
| CAE |
CAF |
1.377 |
1.383 |
| CAE |
CAG |
1.375 |
1.383 |
| CAF |
CAJ |
1.377 |
1.382 |
| CAP |
CAZ |
1.366 |
1.396 |
| CAZ |
CAT |
1.483 |
1.478 |
| CAG |
CAK |
1.381 |
1.382 |
| CAJ |
CAU |
1.380 |
1.383 |
| CAT |
OAA |
1.185 |
1.216 |
| CAT |
NAR |
1.307 |
1.348 |
| CAK |
CAU |
1.377 |
1.383 |
| CAU |
CAQ |
1.500 |
1.506 |
| NAR |
CAX |
1.357 |
1.400 |
| CAQ |
OAS |
1.434 |
1.429 |
| OAS |
CAY |
1.364 |
1.361 |
| CAX |
CAY |
1.382 |
1.393 |
| CAX |
CAL |
1.364 |
1.388 |
| CAY |
CAO |
1.372 |
1.386 |
| CAL |
CAH |
1.379 |
1.382 |
| CAO |
CAI |
1.376 |
1.383 |
| CAH |
CAI |
1.373 |
1.382 |
| CAK |
H1 |
1.080 |
1.081 |
| CAJ |
H2 |
1.080 |
1.080 |
| CAI |
H3 |
1.080 |
1.081 |
| CAV |
H4 |
1.080 |
1.080 |
| CAQ |
H5 |
1.100 |
1.090 |
| CAQ |
H6 |
1.100 |
1.091 |
| CAP |
H7 |
1.080 |
1.080 |
| CAO |
H8 |
1.080 |
1.080 |
| CAN |
H9 |
1.080 |
1.080 |
| CAM |
H10 |
1.080 |
1.080 |
| CAL |
H11 |
1.080 |
1.080 |
| NAR |
H12 |
1.000 |
0.970 |
| CAH |
H13 |
1.080 |
1.081 |
| CAF |
H14 |
1.080 |
1.081 |
| CAE |
H15 |
1.080 |
1.080 |
| CAG |
H16 |
1.080 |
1.080 |
Bond Angles for B05
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAB |
NBA |
CAW |
119.2 |
120.0 |
| OAB |
NBA |
OAC |
121.2 |
120.0 |
| CAM |
CAN |
H9 |
120.3 |
119.9 |
| CAN |
CAM |
H10 |
119.4 |
119.9 |
| CAM |
CAV |
H4 |
121.0 |
120.0 |
| NBA |
CAW |
CAP |
118.7 |
119.9 |
| CAW |
CAP |
H7 |
119.9 |
120.0 |
| CAV |
CAZ |
CAT |
126.0 |
120.2 |
| CAE |
CAF |
H14 |
119.9 |
120.0 |
| CAG |
CAE |
H15 |
119.7 |
120.0 |
| CAE |
CAG |
H16 |
120.5 |
120.0 |
| CAF |
CAJ |
H2 |
120.3 |
120.0 |
| CAZ |
CAT |
OAA |
117.2 |
120.0 |
| CAZ |
CAT |
NAR |
121.7 |
120.0 |
| CAG |
CAK |
H1 |
119.6 |
120.0 |
| CAK |
CAU |
CAJ |
119.9 |
120.0 |
| CAJ |
CAU |
CAQ |
120.9 |
120.0 |
| CAU |
CAJ |
H2 |
120.3 |
120.0 |
| OAA |
CAT |
NAR |
121.0 |
120.1 |
| CAT |
NAR |
H12 |
117.4 |
120.0 |
| CAK |
CAU |
CAQ |
119.2 |
120.0 |
| CAU |
CAK |
H1 |
119.6 |
120.0 |
| CAU |
CAQ |
OAS |
108.8 |
109.5 |
| CAU |
CAQ |
H5 |
109.7 |
109.5 |
| CAU |
CAQ |
H6 |
109.7 |
109.5 |
| OAS |
CAQ |
H5 |
109.6 |
109.5 |
| OAS |
CAQ |
H6 |
109.7 |
109.4 |
| CAX |
CAY |
CAO |
119.4 |
119.9 |
| CAX |
CAL |
CAH |
119.0 |
119.9 |
| CAX |
CAL |
H11 |
120.5 |
120.0 |
| CAY |
CAO |
H8 |
119.8 |
120.0 |
| CAH |
CAL |
H11 |
120.5 |
120.1 |
| CAL |
CAH |
H13 |
119.5 |
119.9 |
| CAO |
CAI |
H3 |
120.3 |
119.8 |
| CAH |
CAI |
H3 |
120.3 |
120.0 |
| H5 |
CAQ |
H6 |
109.5 |
109.5 |
Torsion Angles for B05
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OAB |
NBA |
CAW |
CAP |
190.7 |
0.1 |
| CAN |
CAM |
CAV |
H4 |
180.8 |
180.0 |
| CAN |
CAW |
CAP |
H7 |
179.7 |
180.0 |
| OAB |
NBA |
CAW |
OAC |
179.5 |
180.1 |
| NBA |
CAW |
CAP |
H7 |
0.1 |
360.0 |
| OAB |
NBA |
OAC |
CAW |
180.5 |
179.9 |
| CAV |
CAZ |
CAT |
OAA |
132.2 |
180.0 |
| CAV |
CAZ |
CAT |
NAR |
309.8 |
359.9 |
| CAE |
CAF |
CAJ |
H2 |
179.9 |
179.5 |
| CAG |
CAE |
CAF |
H14 |
180.1 |
180.2 |
| CAE |
CAG |
CAK |
H1 |
179.9 |
180.2 |
| CAU |
CAJ |
CAF |
H2 |
180.0 |
179.9 |
| CAP |
CAZ |
CAT |
OAA |
312.6 |
0.3 |
| CAP |
CAZ |
CAT |
NAR |
130.1 |
180.3 |
| OAA |
CAT |
CAZ |
NAR |
182.5 |
180.1 |
| CAZ |
CAT |
NAR |
H12 |
21.3 |
5.6 |
| CAU |
CAK |
CAG |
H1 |
180.0 |
179.8 |
| CAF |
CAJ |
CAU |
H2 |
180.0 |
180.1 |
| CAK |
CAU |
CAJ |
CAQ |
179.8 |
180.0 |
| CAJ |
CAU |
CAK |
H1 |
180.0 |
180.0 |
| CAJ |
CAU |
CAQ |
OAS |
139.7 |
270.0 |
| CAJ |
CAU |
CAQ |
H5 |
259.6 |
30.0 |
| CAJ |
CAU |
CAQ |
H6 |
19.8 |
150.0 |
| CAZ |
CAT |
OAA |
NAR |
177.5 |
179.9 |
| OAA |
CAT |
NAR |
H12 |
198.7 |
185.5 |
| CAZ |
CAT |
NAR |
OAA |
182.6 |
180.1 |
| CAG |
CAK |
CAU |
H1 |
180.0 |
180.2 |
| CAJ |
CAU |
CAK |
CAQ |
180.2 |
180.0 |
| CAK |
CAU |
CAJ |
H2 |
180.1 |
180.0 |
| CAK |
CAU |
CAQ |
OAS |
319.9 |
89.9 |
| CAK |
CAU |
CAQ |
H5 |
79.8 |
210.0 |
| CAK |
CAU |
CAQ |
H6 |
200.0 |
330.0 |
| CAK |
CAU |
CAQ |
CAJ |
180.2 |
180.0 |
| CAQ |
CAU |
CAJ |
H2 |
0.3 |
360.0 |
| CAQ |
CAU |
CAK |
H1 |
359.8 |
0.0 |
| OAS |
CAQ |
CAU |
H5 |
240.1 |
240.0 |
| OAS |
CAQ |
CAU |
H6 |
119.9 |
119.9 |
| H5 |
CAQ |
CAU |
H6 |
239.8 |
240.0 |
| CAZ |
CAT |
NAR |
CAX |
201.3 |
185.6 |
| NAR |
CAX |
CAL |
CAH |
178.1 |
180.0 |
| NAR |
CAX |
CAL |
H11 |
358.1 |
359.7 |
| CAU |
CAQ |
OAS |
H5 |
119.9 |
120.0 |
| CAU |
CAQ |
OAS |
H6 |
240.1 |
240.0 |
| H5 |
CAQ |
OAS |
H6 |
120.2 |
120.0 |
| OAS |
CAY |
CAO |
H8 |
1.2 |
0.1 |
| CAX |
CAY |
CAO |
H8 |
180.2 |
180.0 |
| CAL |
CAX |
CAY |
CAO |
357.5 |
359.8 |
| CAH |
CAL |
CAX |
H11 |
180.0 |
180.2 |
| CAX |
CAL |
CAH |
H13 |
178.2 |
180.0 |
| CAY |
CAO |
CAI |
H3 |
181.2 |
180.0 |
| CAX |
CAL |
CAH |
H11 |
180.0 |
179.8 |
| CAL |
CAH |
CAI |
H3 |
179.6 |
180.0 |
| CAH |
CAI |
CAO |
H3 |
180.0 |
180.3 |
| CAO |
CAI |
CAH |
H3 |
180.0 |
179.7 |
| H1 |
CAK |
CAU |
CAJ |
180.0 |
180.0 |
| H1 |
CAK |
CAU |
CAQ |
359.8 |
0.0 |
| H2 |
CAJ |
CAU |
CAQ |
0.3 |
360.0 |
| H4 |
CAV |
CAZ |
CAT |
359.3 |
0.0 |
| CAU |
CAQ |
H5 |
OAS |
240.7 |
240.0 |
| CAU |
CAQ |
H5 |
H6 |
120.3 |
120.0 |
| OAS |
CAQ |
H5 |
H6 |
239.7 |
240.0 |
| CAU |
CAQ |
H6 |
OAS |
119.4 |
120.0 |
| CAU |
CAQ |
H6 |
H5 |
239.7 |
240.0 |
| OAS |
CAQ |
H6 |
H5 |
120.3 |
120.0 |
| H8 |
CAO |
CAI |
H3 |
1.2 |
359.9 |
| H9 |
CAN |
CAM |
H10 |
359.8 |
359.8 |
| H10 |
CAM |
CAN |
H9 |
359.8 |
359.8 |
| H10 |
CAM |
CAV |
H4 |
0.7 |
0.2 |
| CAX |
CAL |
H11 |
CAH |
180.0 |
180.2 |
| H11 |
CAL |
CAH |
H13 |
358.1 |
0.2 |
| H13 |
CAH |
CAL |
H11 |
358.1 |
0.2 |
| H13 |
CAH |
CAI |
H3 |
359.6 |
0.1 |
| H14 |
CAF |
CAJ |
H2 |
359.9 |
0.1 |
| H15 |
CAE |
CAF |
H14 |
0.1 |
359.4 |
| H15 |
CAE |
CAG |
H16 |
0.0 |
0.2 |
| H16 |
CAG |
CAE |
H15 |
0.0 |
0.2 |
| H16 |
CAG |
CAK |
H1 |
359.9 |
0.3 |