PDB Chemical Component B02
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B02
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C21 |
C6 |
1.537 |
1.530 |
C21 |
C7 |
1.528 |
1.530 |
O |
C1 |
1.263 |
1.220 |
C2 |
C1 |
1.399 |
1.406 |
C2 |
C3 |
1.406 |
1.364 |
C6 |
C7 |
1.534 |
1.530 |
C6 |
C3 |
1.492 |
1.507 |
C1 |
N2 |
1.415 |
1.350 |
C7 |
C8 |
1.504 |
1.507 |
C13 |
C8 |
1.393 |
1.383 |
C13 |
C12 |
1.396 |
1.381 |
C3 |
N1 |
1.359 |
1.332 |
C8 |
C9 |
1.397 |
1.383 |
C12 |
C11 |
1.392 |
1.394 |
N2 |
C5 |
1.469 |
1.465 |
N2 |
C4 |
1.424 |
1.360 |
N1 |
C4 |
1.361 |
1.318 |
C9 |
C10 |
1.396 |
1.380 |
C4 |
N3 |
1.357 |
1.369 |
C11 |
C10 |
1.395 |
1.393 |
C11 |
C14 |
1.499 |
1.484 |
C19 |
C14 |
1.393 |
1.393 |
C19 |
C18 |
1.393 |
1.381 |
C14 |
C15 |
1.404 |
1.393 |
C18 |
C17 |
1.388 |
1.383 |
C15 |
C16 |
1.397 |
1.380 |
C17 |
C16 |
1.388 |
1.383 |
C16 |
C20 |
1.506 |
1.507 |
C5 |
H1 |
1.100 |
1.090 |
C5 |
H2 |
1.100 |
1.090 |
C5 |
H3 |
1.100 |
1.090 |
N3 |
H4 |
1.000 |
0.970 |
N3 |
H5 |
1.000 |
0.970 |
C2 |
H6 |
1.081 |
1.080 |
C6 |
H7 |
1.100 |
1.090 |
C21 |
H8 |
1.101 |
1.090 |
C21 |
H9 |
1.100 |
1.090 |
C7 |
H10 |
1.101 |
1.090 |
C13 |
H11 |
1.080 |
1.079 |
C12 |
H12 |
1.080 |
1.080 |
C10 |
H13 |
1.080 |
1.081 |
C9 |
H14 |
1.080 |
1.080 |
C19 |
H15 |
1.080 |
1.080 |
C18 |
H16 |
1.080 |
1.079 |
C17 |
H17 |
1.080 |
1.079 |
C20 |
H18 |
1.100 |
1.090 |
C20 |
H19 |
1.099 |
1.090 |
C20 |
H20 |
1.100 |
1.090 |
C15 |
H21 |
1.080 |
1.081 |
Bond Angles for B02
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C21 |
C6 |
C7 |
59.7 |
60.0 |
C21 |
C6 |
H7 |
119.4 |
117.5 |
C6 |
C7 |
C21 |
60.3 |
60.0 |
C21 |
C7 |
C8 |
117.2 |
117.5 |
C7 |
C21 |
H8 |
120.0 |
117.5 |
C7 |
C21 |
H9 |
120.0 |
117.6 |
C21 |
C7 |
H10 |
117.2 |
117.5 |
O |
C1 |
N2 |
120.5 |
120.6 |
C6 |
C7 |
C8 |
114.8 |
117.5 |
C7 |
C6 |
H7 |
119.5 |
117.6 |
C6 |
C7 |
H10 |
117.1 |
117.5 |
C1 |
N2 |
C5 |
118.6 |
120.1 |
C1 |
N2 |
C4 |
119.5 |
119.8 |
C7 |
C8 |
C9 |
121.4 |
119.9 |
C8 |
C7 |
H10 |
117.6 |
115.6 |
C13 |
C8 |
C9 |
118.0 |
120.3 |
C13 |
C12 |
C11 |
120.4 |
119.9 |
C12 |
C13 |
H11 |
119.5 |
119.9 |
C13 |
C12 |
H12 |
119.8 |
120.1 |
C8 |
C9 |
C10 |
121.4 |
120.1 |
C8 |
C9 |
H14 |
119.3 |
120.0 |
C12 |
C11 |
C10 |
119.2 |
119.7 |
C12 |
C11 |
C14 |
120.1 |
120.1 |
C11 |
C12 |
H12 |
119.8 |
120.1 |
C5 |
N2 |
C4 |
121.8 |
120.1 |
N2 |
C5 |
H1 |
109.5 |
109.5 |
N2 |
C5 |
H2 |
109.5 |
109.5 |
N2 |
C5 |
H3 |
109.4 |
109.5 |
N2 |
C4 |
N3 |
120.8 |
119.4 |
C9 |
C10 |
H13 |
120.1 |
120.1 |
C4 |
N3 |
H4 |
120.0 |
120.0 |
C4 |
N3 |
H5 |
120.0 |
120.0 |
C10 |
C11 |
C14 |
120.7 |
120.2 |
C11 |
C10 |
H13 |
120.0 |
120.0 |
C11 |
C14 |
C15 |
121.9 |
120.1 |
C19 |
C14 |
C15 |
119.1 |
119.8 |
C19 |
C18 |
C17 |
121.1 |
120.1 |
C18 |
C19 |
H15 |
120.1 |
120.0 |
C19 |
C18 |
H16 |
119.5 |
119.9 |
C14 |
C15 |
C16 |
120.8 |
119.9 |
C14 |
C15 |
H21 |
119.6 |
120.1 |
C18 |
C17 |
C16 |
119.8 |
120.3 |
C17 |
C18 |
H16 |
119.5 |
120.0 |
C18 |
C17 |
H17 |
120.1 |
119.9 |
C17 |
C16 |
C20 |
119.4 |
119.9 |
C16 |
C17 |
H17 |
120.1 |
119.9 |
C16 |
C20 |
H18 |
109.5 |
109.5 |
C16 |
C20 |
H19 |
109.5 |
109.4 |
C16 |
C20 |
H20 |
109.5 |
109.5 |
H1 |
C5 |
H2 |
109.5 |
109.4 |
H1 |
C5 |
H3 |
109.4 |
109.5 |
H2 |
C5 |
H3 |
109.5 |
109.5 |
H4 |
N3 |
H5 |
120.0 |
120.0 |
H8 |
C21 |
H9 |
109.5 |
115.6 |
H18 |
C20 |
H19 |
109.5 |
109.5 |
H18 |
C20 |
H20 |
109.5 |
109.5 |
H19 |
C20 |
H20 |
109.4 |
109.5 |
Torsion Angles for B02
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C7 |
C21 |
C6 |
-0.0 |
-0.0 |
C21 |
C6 |
C7 |
C8 |
108.4 |
107.5 |
C7 |
C6 |
C21 |
H7 |
108.9 |
107.6 |
C21 |
C6 |
C7 |
H10 |
252.6 |
252.5 |
C7 |
C21 |
C6 |
C7 |
360.0 |
360.0 |
C7 |
C21 |
C6 |
H7 |
251.1 |
252.4 |
C6 |
C7 |
C21 |
C8 |
104.5 |
107.5 |
C21 |
C7 |
C6 |
H7 |
108.8 |
107.5 |
C6 |
C7 |
C21 |
H10 |
252.8 |
252.5 |
C21 |
C7 |
C8 |
C9 |
120.8 |
188.6 |
C8 |
C7 |
C21 |
H10 |
148.3 |
145.0 |
H8 |
C21 |
C7 |
H9 |
141.0 |
145.1 |
O |
C1 |
N2 |
C5 |
359.2 |
0.1 |
O |
C1 |
N2 |
C4 |
180.4 |
180.0 |
C21 |
C6 |
C7 |
H7 |
251.2 |
252.5 |
C21 |
C7 |
C6 |
C8 |
251.6 |
252.5 |
C6 |
C7 |
C21 |
H8 |
250.5 |
252.5 |
C6 |
C7 |
C21 |
H9 |
109.5 |
107.5 |
C21 |
C7 |
C6 |
H10 |
107.4 |
107.5 |
C6 |
C7 |
C8 |
C9 |
53.0 |
119.9 |
C8 |
C7 |
C6 |
H10 |
215.8 |
215.0 |
C5 |
N2 |
C1 |
C4 |
178.9 |
180.1 |
C1 |
N2 |
C5 |
H1 |
180.0 |
0.0 |
C1 |
N2 |
C5 |
H2 |
300.0 |
119.9 |
C1 |
N2 |
C5 |
H3 |
60.0 |
240.0 |
C1 |
N2 |
C4 |
N3 |
179.6 |
180.0 |
C6 |
C7 |
C8 |
C21 |
292.1 |
291.4 |
C8 |
C7 |
C21 |
H8 |
146.0 |
145.0 |
C8 |
C7 |
C21 |
H9 |
5.0 |
360.0 |
C21 |
C7 |
C8 |
H10 |
211.9 |
214.3 |
C8 |
C7 |
C6 |
H7 |
217.2 |
214.9 |
C6 |
C7 |
C8 |
H10 |
144.0 |
145.6 |
C13 |
C8 |
C7 |
C9 |
175.2 |
180.4 |
C7 |
C8 |
C9 |
C10 |
177.7 |
179.7 |
C7 |
C8 |
C9 |
H14 |
357.7 |
0.1 |
C7 |
C8 |
C13 |
C9 |
184.6 |
179.6 |
C13 |
C8 |
C7 |
H10 |
84.2 |
154.6 |
C13 |
C8 |
C9 |
C10 |
2.4 |
359.4 |
C13 |
C8 |
C9 |
H14 |
182.4 |
179.8 |
C12 |
C13 |
C8 |
C9 |
358.0 |
0.3 |
C13 |
C12 |
C11 |
C10 |
0.6 |
0.1 |
C13 |
C12 |
C11 |
C14 |
179.7 |
180.0 |
C11 |
C12 |
C13 |
H12 |
180.0 |
179.9 |
C9 |
C8 |
C7 |
H10 |
269.0 |
334.3 |
C8 |
C9 |
C10 |
H13 |
178.8 |
180.3 |
C11 |
C12 |
C13 |
H11 |
180.5 |
180.0 |
C13 |
C12 |
C11 |
H12 |
180.0 |
180.1 |
C10 |
C11 |
C12 |
C14 |
181.0 |
180.1 |
C12 |
C11 |
C10 |
H13 |
179.7 |
180.0 |
C12 |
C11 |
C14 |
C15 |
165.5 |
180.0 |
C1 |
N2 |
C5 |
C4 |
181.1 |
179.9 |
C5 |
N2 |
C4 |
N3 |
0.8 |
359.9 |
H1 |
C5 |
N2 |
H2 |
239.9 |
240.1 |
H1 |
C5 |
N2 |
H3 |
120.0 |
120.0 |
H2 |
C5 |
N2 |
H3 |
240.0 |
240.0 |
C1 |
N2 |
C4 |
C5 |
178.8 |
180.1 |
C4 |
N2 |
C5 |
H1 |
358.8 |
180.1 |
C4 |
N2 |
C5 |
H2 |
118.9 |
300.0 |
C4 |
N2 |
C5 |
H3 |
238.9 |
60.0 |
N2 |
C4 |
N3 |
H4 |
180.1 |
0.1 |
N2 |
C4 |
N3 |
H5 |
0.1 |
180.0 |
N1 |
C4 |
N3 |
H4 |
0.0 |
180.0 |
N1 |
C4 |
N3 |
H5 |
180.0 |
359.9 |
C8 |
C9 |
C10 |
H14 |
180.0 |
180.4 |
C9 |
C10 |
C11 |
C14 |
180.7 |
179.7 |
C11 |
C10 |
C9 |
H13 |
180.0 |
180.3 |
H4 |
N3 |
C4 |
H5 |
180.0 |
180.1 |
C8 |
C9 |
C10 |
C11 |
358.8 |
0.6 |
C12 |
C11 |
C10 |
C14 |
179.0 |
179.9 |
C10 |
C11 |
C12 |
H12 |
180.6 |
180.0 |
C9 |
C10 |
C11 |
H13 |
180.0 |
179.7 |
C10 |
C11 |
C14 |
C15 |
344.5 |
359.9 |
C12 |
C11 |
C14 |
C10 |
181.0 |
180.1 |
C14 |
C11 |
C12 |
H12 |
359.7 |
359.9 |
C14 |
C11 |
C10 |
H13 |
0.7 |
0.1 |
C19 |
C14 |
C11 |
C15 |
177.9 |
180.3 |
C11 |
C14 |
C15 |
C16 |
179.4 |
179.7 |
C11 |
C14 |
C15 |
H21 |
359.4 |
360.0 |
C11 |
C14 |
C19 |
C15 |
182.0 |
179.7 |
C19 |
C14 |
C15 |
C16 |
1.4 |
359.4 |
C19 |
C14 |
C15 |
H21 |
181.5 |
179.7 |
C18 |
C19 |
C14 |
C15 |
358.5 |
0.3 |
C19 |
C18 |
C17 |
C16 |
0.4 |
0.1 |
C17 |
C18 |
C19 |
H16 |
180.0 |
179.9 |
C19 |
C18 |
C17 |
H17 |
180.4 |
180.0 |
C17 |
C18 |
C19 |
H15 |
180.6 |
179.9 |
C19 |
C18 |
C17 |
H16 |
180.0 |
180.1 |
C18 |
C17 |
C16 |
C20 |
180.1 |
180.0 |
C16 |
C17 |
C18 |
H17 |
180.0 |
180.1 |
C14 |
C15 |
C16 |
H21 |
180.0 |
180.3 |
C15 |
C16 |
C17 |
H17 |
179.6 |
179.7 |
C15 |
C16 |
C20 |
H18 |
90.3 |
270.4 |
C15 |
C16 |
C20 |
H19 |
210.3 |
30.3 |
C15 |
C16 |
C20 |
H20 |
330.3 |
150.3 |
C14 |
C15 |
C16 |
C17 |
359.5 |
0.6 |
C16 |
C17 |
C18 |
H16 |
180.4 |
180.1 |
C18 |
C17 |
C16 |
H17 |
180.0 |
179.9 |
C17 |
C16 |
C20 |
H18 |
269.7 |
90.0 |
C17 |
C16 |
C20 |
H19 |
29.7 |
209.9 |
C17 |
C16 |
C20 |
H20 |
149.7 |
329.9 |
C14 |
C15 |
C16 |
C20 |
178.9 |
180.3 |
C20 |
C16 |
C17 |
H17 |
0.2 |
0.1 |
H18 |
C20 |
C16 |
H19 |
240.0 |
240.1 |
H18 |
C20 |
C16 |
H20 |
120.0 |
120.1 |
H19 |
C20 |
C16 |
H20 |
240.0 |
240.0 |
H1 |
C5 |
N2 |
C4 |
358.8 |
180.1 |
N2 |
C5 |
H1 |
H2 |
120.0 |
120.0 |
N2 |
C5 |
H1 |
H3 |
240.0 |
240.0 |
H2 |
C5 |
H1 |
H3 |
120.0 |
120.0 |
H2 |
C5 |
N2 |
C4 |
118.9 |
300.0 |
N2 |
C5 |
H2 |
H1 |
239.9 |
240.0 |
N2 |
C5 |
H2 |
H3 |
120.0 |
120.0 |
H1 |
C5 |
H2 |
H3 |
240.0 |
240.0 |
H3 |
C5 |
N2 |
C4 |
238.9 |
60.0 |
N2 |
C5 |
H3 |
H1 |
120.0 |
120.0 |
N2 |
C5 |
H3 |
H2 |
240.0 |
240.0 |
H1 |
C5 |
H3 |
H2 |
120.0 |
119.9 |
C4 |
N3 |
H4 |
H5 |
180.0 |
179.9 |
C4 |
N3 |
H5 |
H4 |
180.0 |
180.1 |
C21 |
C6 |
H7 |
C7 |
69.7 |
68.6 |
H7 |
C6 |
C7 |
C21 |
108.8 |
107.5 |
H7 |
C6 |
C7 |
C8 |
217.2 |
214.9 |
H7 |
C6 |
C7 |
H10 |
1.4 |
359.9 |
H8 |
C21 |
C6 |
C7 |
109.5 |
107.5 |
H8 |
C21 |
C6 |
H7 |
0.5 |
359.9 |
H8 |
C21 |
C7 |
C8 |
146.0 |
145.0 |
C7 |
C21 |
H8 |
H9 |
215.3 |
214.3 |
H8 |
C21 |
C7 |
H10 |
357.7 |
360.0 |
H9 |
C21 |
C6 |
C7 |
250.5 |
252.5 |
H9 |
C21 |
C6 |
H7 |
141.6 |
144.9 |
H9 |
C21 |
C7 |
C8 |
5.0 |
360.0 |
C7 |
C21 |
H9 |
H8 |
144.7 |
145.7 |
H9 |
C21 |
C7 |
H10 |
216.7 |
214.9 |
C6 |
C7 |
H10 |
C21 |
68.7 |
68.6 |
C21 |
C7 |
H10 |
C8 |
148.1 |
145.7 |
H10 |
C7 |
C21 |
H8 |
357.7 |
360.0 |
H10 |
C7 |
C21 |
H9 |
216.7 |
214.9 |
C6 |
C7 |
H10 |
C8 |
216.8 |
214.3 |
H10 |
C7 |
C6 |
H7 |
1.4 |
359.9 |
H10 |
C7 |
C8 |
C9 |
269.0 |
334.3 |
H11 |
C13 |
C8 |
C9 |
178.0 |
180.3 |
H11 |
C13 |
C12 |
C11 |
180.5 |
180.0 |
H11 |
C13 |
C12 |
H12 |
0.5 |
0.0 |
C13 |
C12 |
H12 |
C11 |
180.0 |
179.9 |
H12 |
C12 |
C13 |
H11 |
0.5 |
0.0 |
H12 |
C12 |
C11 |
C10 |
180.6 |
180.0 |
H12 |
C12 |
C11 |
C14 |
359.7 |
359.9 |
H13 |
C10 |
C11 |
C14 |
0.7 |
0.1 |
C8 |
C9 |
H14 |
C10 |
180.0 |
179.6 |
H14 |
C9 |
C10 |
H13 |
358.8 |
359.9 |
H15 |
C19 |
C14 |
C15 |
178.5 |
180.3 |
H15 |
C19 |
C18 |
C17 |
180.6 |
179.9 |
H15 |
C19 |
C18 |
H16 |
0.6 |
360.0 |
C19 |
C18 |
H16 |
C17 |
180.0 |
179.9 |
H16 |
C18 |
C19 |
H15 |
0.6 |
360.0 |
H16 |
C18 |
C17 |
C16 |
180.4 |
180.1 |
H16 |
C18 |
C17 |
H17 |
0.4 |
360.0 |
C18 |
C17 |
H17 |
C16 |
180.0 |
180.1 |
H17 |
C17 |
C18 |
H16 |
0.4 |
360.0 |
H17 |
C17 |
C16 |
C20 |
0.2 |
0.1 |
C16 |
C20 |
H18 |
H19 |
120.0 |
119.9 |
C16 |
C20 |
H18 |
H20 |
240.0 |
239.9 |
H19 |
C20 |
H18 |
H20 |
120.0 |
120.0 |
C16 |
C20 |
H19 |
H18 |
239.9 |
240.0 |
C16 |
C20 |
H19 |
H20 |
120.0 |
120.0 |
H18 |
C20 |
H19 |
H20 |
240.0 |
239.9 |
C16 |
C20 |
H20 |
H18 |
120.1 |
120.0 |
C16 |
C20 |
H20 |
H19 |
240.0 |
240.1 |
H18 |
C20 |
H20 |
H19 |
120.0 |
120.0 |
C14 |
C15 |
H21 |
C16 |
180.0 |
179.7 |