PDB Chemical Component B00
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for B00
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C14 |
C6 |
1.535 |
1.530 |
| C14 |
C7 |
1.531 |
1.530 |
| O |
C1 |
1.250 |
1.221 |
| C2 |
C1 |
1.396 |
1.406 |
| C2 |
C3 |
1.403 |
1.366 |
| C6 |
C7 |
1.540 |
1.530 |
| C6 |
C3 |
1.495 |
1.507 |
| C7 |
C8 |
1.493 |
1.507 |
| C9 |
C10 |
1.399 |
1.383 |
| C9 |
C8 |
1.401 |
1.382 |
| C1 |
N2 |
1.418 |
1.350 |
| C3 |
N1 |
1.370 |
1.331 |
| C10 |
C11 |
1.394 |
1.383 |
| C8 |
C13 |
1.405 |
1.382 |
| N2 |
C5 |
1.469 |
1.465 |
| N2 |
C4 |
1.427 |
1.361 |
| N1 |
C4 |
1.361 |
1.318 |
| C11 |
C12 |
1.397 |
1.382 |
| C13 |
C12 |
1.397 |
1.383 |
| C4 |
N3 |
1.366 |
1.369 |
| C5 |
H1 |
1.100 |
1.090 |
| C5 |
H2 |
1.100 |
1.090 |
| C5 |
H3 |
1.100 |
1.090 |
| N3 |
H4 |
1.000 |
0.970 |
| N3 |
H5 |
1.000 |
0.970 |
| C2 |
H6 |
1.080 |
1.079 |
| C6 |
H7 |
1.100 |
1.090 |
| C14 |
H8 |
1.100 |
1.090 |
| C14 |
H9 |
1.100 |
1.090 |
| C7 |
H10 |
1.100 |
1.089 |
| C13 |
H11 |
1.080 |
1.079 |
| C12 |
H12 |
1.080 |
1.080 |
| C11 |
H13 |
1.080 |
1.079 |
| C10 |
H14 |
1.080 |
1.080 |
| C9 |
H15 |
1.080 |
1.080 |
Bond Angles for B00
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C14 |
C6 |
C7 |
59.7 |
60.0 |
| C14 |
C6 |
H7 |
117.5 |
117.5 |
| C6 |
C7 |
C14 |
60.0 |
60.0 |
| C14 |
C7 |
C8 |
114.7 |
117.5 |
| C7 |
C14 |
H8 |
120.0 |
117.5 |
| C7 |
C14 |
H9 |
119.9 |
117.5 |
| C14 |
C7 |
H10 |
117.3 |
117.5 |
| O |
C1 |
N2 |
120.7 |
120.6 |
| C6 |
C7 |
C8 |
116.5 |
117.5 |
| C7 |
C6 |
H7 |
117.4 |
117.5 |
| C6 |
C7 |
H10 |
117.2 |
117.5 |
| C7 |
C8 |
C13 |
120.3 |
120.0 |
| C8 |
C7 |
H10 |
118.2 |
115.6 |
| C9 |
C10 |
H14 |
119.7 |
120.0 |
| C1 |
N2 |
C5 |
118.7 |
120.1 |
| C1 |
N2 |
C4 |
119.0 |
119.7 |
| C10 |
C11 |
H13 |
120.0 |
120.0 |
| C8 |
C13 |
C12 |
121.0 |
120.0 |
| C8 |
C13 |
H11 |
119.5 |
120.0 |
| C5 |
N2 |
C4 |
122.3 |
120.1 |
| N2 |
C5 |
H1 |
109.5 |
109.5 |
| N2 |
C5 |
H2 |
109.5 |
109.5 |
| N2 |
C5 |
H3 |
109.5 |
109.4 |
| N2 |
C4 |
N3 |
121.1 |
119.4 |
| C11 |
C12 |
H12 |
120.3 |
120.0 |
| C12 |
C13 |
H11 |
119.5 |
120.0 |
| C13 |
C12 |
H12 |
120.3 |
120.0 |
| C4 |
N3 |
H4 |
120.0 |
120.1 |
| C4 |
N3 |
H5 |
120.0 |
120.0 |
| H1 |
C5 |
H2 |
109.4 |
109.5 |
| H1 |
C5 |
H3 |
109.4 |
109.5 |
| H2 |
C5 |
H3 |
109.5 |
109.4 |
| H4 |
N3 |
H5 |
120.0 |
120.0 |
| H8 |
C14 |
H9 |
109.5 |
115.5 |
Torsion Angles for B00
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C7 |
C14 |
C6 |
-0.0 |
-0.0 |
| C14 |
C6 |
C7 |
C8 |
104.6 |
107.4 |
| C7 |
C6 |
C14 |
H7 |
107.3 |
107.5 |
| C14 |
C6 |
C7 |
H10 |
252.6 |
252.5 |
| C7 |
C14 |
C6 |
C7 |
-0.0 |
360.0 |
| C7 |
C14 |
C6 |
H7 |
252.7 |
252.5 |
| C6 |
C7 |
C14 |
C8 |
107.5 |
107.5 |
| C14 |
C7 |
C6 |
H7 |
107.4 |
107.5 |
| C6 |
C7 |
C14 |
H10 |
252.9 |
252.5 |
| C14 |
C7 |
C8 |
C13 |
136.5 |
188.6 |
| C8 |
C7 |
C14 |
H10 |
145.3 |
145.0 |
| H8 |
C14 |
C7 |
H9 |
140.9 |
144.9 |
| O |
C1 |
N2 |
C5 |
359.4 |
0.0 |
| O |
C1 |
N2 |
C4 |
181.1 |
179.9 |
| C14 |
C6 |
C7 |
H7 |
252.6 |
252.5 |
| C14 |
C7 |
C6 |
C8 |
255.4 |
252.6 |
| C6 |
C7 |
C14 |
H8 |
250.4 |
252.5 |
| C6 |
C7 |
C14 |
H9 |
109.5 |
107.5 |
| C14 |
C7 |
C6 |
H10 |
107.4 |
107.5 |
| C6 |
C7 |
C8 |
C13 |
69.3 |
120.0 |
| C8 |
C7 |
C6 |
H10 |
212.0 |
214.9 |
| C6 |
C7 |
C8 |
C14 |
292.7 |
291.4 |
| C8 |
C7 |
C14 |
H8 |
142.9 |
145.0 |
| C8 |
C7 |
C14 |
H9 |
2.0 |
0.0 |
| C14 |
C7 |
C8 |
H10 |
215.0 |
214.3 |
| C8 |
C7 |
C6 |
H7 |
212.0 |
215.0 |
| C6 |
C7 |
C8 |
H10 |
147.7 |
145.7 |
| C7 |
C8 |
C13 |
C12 |
179.6 |
180.0 |
| C7 |
C8 |
C13 |
H11 |
359.6 |
360.0 |
| C9 |
C10 |
C11 |
H13 |
179.6 |
179.7 |
| C9 |
C8 |
C7 |
H10 |
99.7 |
154.0 |
| C9 |
C8 |
C13 |
H11 |
181.4 |
180.2 |
| C5 |
N2 |
C1 |
C4 |
178.3 |
180.1 |
| C1 |
N2 |
C5 |
H1 |
180.0 |
360.0 |
| C1 |
N2 |
C5 |
H2 |
300.0 |
120.0 |
| C1 |
N2 |
C5 |
H3 |
60.0 |
240.0 |
| C1 |
N2 |
C4 |
N3 |
179.2 |
180.0 |
| C10 |
C11 |
C12 |
H12 |
180.3 |
180.0 |
| C13 |
C8 |
C7 |
H10 |
281.6 |
334.3 |
| C12 |
C13 |
C8 |
H11 |
180.0 |
180.0 |
| C8 |
C13 |
C12 |
H12 |
179.1 |
180.0 |
| C1 |
N2 |
C5 |
C4 |
181.7 |
179.9 |
| C5 |
N2 |
C4 |
N3 |
1.0 |
359.9 |
| H1 |
C5 |
N2 |
H2 |
240.0 |
239.9 |
| H1 |
C5 |
N2 |
H3 |
120.0 |
120.0 |
| H2 |
C5 |
N2 |
H3 |
240.0 |
240.1 |
| C1 |
N2 |
C4 |
C5 |
178.3 |
180.1 |
| C4 |
N2 |
C5 |
H1 |
358.3 |
180.0 |
| C4 |
N2 |
C5 |
H2 |
118.2 |
300.1 |
| C4 |
N2 |
C5 |
H3 |
238.3 |
60.0 |
| N2 |
C4 |
N3 |
H4 |
179.4 |
0.1 |
| N2 |
C4 |
N3 |
H5 |
359.4 |
180.0 |
| N1 |
C4 |
N3 |
H4 |
0.0 |
180.1 |
| N1 |
C4 |
N3 |
H5 |
180.0 |
0.0 |
| C11 |
C12 |
C13 |
H11 |
179.1 |
180.1 |
| C13 |
C12 |
C11 |
H12 |
180.0 |
180.0 |
| C8 |
C13 |
C12 |
H11 |
180.0 |
180.0 |
| C11 |
C12 |
C13 |
H12 |
180.0 |
180.0 |
| H4 |
N3 |
C4 |
H5 |
180.0 |
180.1 |
| H1 |
C5 |
N2 |
C4 |
358.3 |
180.0 |
| N2 |
C5 |
H1 |
H2 |
120.0 |
120.1 |
| N2 |
C5 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C5 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C5 |
N2 |
C4 |
118.2 |
300.1 |
| N2 |
C5 |
H2 |
H1 |
240.0 |
239.9 |
| N2 |
C5 |
H2 |
H3 |
120.0 |
119.9 |
| H1 |
C5 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C5 |
N2 |
C4 |
238.3 |
60.0 |
| N2 |
C5 |
H3 |
H1 |
120.0 |
120.0 |
| N2 |
C5 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C5 |
H3 |
H2 |
120.0 |
120.0 |
| C4 |
N3 |
H4 |
H5 |
180.0 |
179.9 |
| C4 |
N3 |
H5 |
H4 |
180.0 |
180.1 |
| C14 |
C6 |
H7 |
C7 |
68.2 |
68.7 |
| H7 |
C6 |
C7 |
C14 |
107.4 |
107.5 |
| H7 |
C6 |
C7 |
C8 |
212.0 |
215.0 |
| H7 |
C6 |
C7 |
H10 |
360.0 |
0.0 |
| H8 |
C14 |
C6 |
C7 |
109.6 |
107.5 |
| H8 |
C14 |
C6 |
H7 |
2.3 |
360.0 |
| H8 |
C14 |
C7 |
C8 |
142.9 |
145.0 |
| C7 |
C14 |
H8 |
H9 |
215.4 |
214.4 |
| H8 |
C14 |
C7 |
H10 |
357.6 |
359.9 |
| H9 |
C14 |
C6 |
C7 |
250.5 |
252.5 |
| H9 |
C14 |
C6 |
H7 |
143.2 |
145.0 |
| H9 |
C14 |
C7 |
C8 |
2.0 |
0.0 |
| C7 |
C14 |
H9 |
H8 |
144.6 |
145.6 |
| H9 |
C14 |
C7 |
H10 |
216.7 |
215.0 |
| C6 |
C7 |
H10 |
C14 |
68.4 |
68.6 |
| C14 |
C7 |
H10 |
C8 |
144.1 |
145.7 |
| H10 |
C7 |
C14 |
H8 |
357.6 |
359.9 |
| H10 |
C7 |
C14 |
H9 |
216.7 |
215.0 |
| C6 |
C7 |
H10 |
C8 |
212.5 |
214.3 |
| H10 |
C7 |
C6 |
H7 |
360.0 |
0.0 |
| H10 |
C7 |
C8 |
C13 |
281.6 |
334.3 |
| C8 |
C13 |
H11 |
C12 |
180.0 |
180.0 |
| H11 |
C13 |
C12 |
H12 |
359.1 |
0.0 |
| H12 |
C12 |
C13 |
H11 |
359.1 |
0.0 |
| H13 |
C11 |
C12 |
H12 |
0.3 |
359.9 |
| H14 |
C10 |
C11 |
H13 |
359.6 |
0.1 |
| H15 |
C9 |
C10 |
H14 |
1.0 |
359.7 |