PDB Chemical Component AZZ

Ideal Model

Chemical Description

Name 3'-azido-3'-deoxythymidine
Synonyms Azidothymidine; Zidovudine
Formula C10 H13 N5 O4
Formal charge 0
Molecular weight 267.241 g/mol
Component type NON-POLYMER

Chemical features

Atom count 32
Chiral atom count 3
Chiral atoms C4' C3' C1'
Bond count 33
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3'-azido-3'-deoxythymidine
Systematic name (OpenEye OEToolkits) 1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](N=[N+]=[N-])[C@@H](CO)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](N=[N+]=[N-])[CH](CO)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)N=[N+]=[N-]
InChI descriptor InChI=1S/C10H13N5O4/c1-5-3-15(10(18)12-9(5)17)8-2-6(13-14-11)7(4-16)19-8/h3,6-8,16H,2,4H2,1H3,(H,12,17,18)/t6-,7+,8+/m0/s1
InChIKey descriptor HBOMLICNUCNMMY-XLPZGREQSA-N

Status Information

Last modified 2020-06-17
Created 2007-11-14
Release status REL
Model PDB code 3B9L
Processing site PDBJ