PDB Chemical Component AZZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AZZ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O5' |
C5' |
1.417 |
1.429 |
| C5' |
C4' |
1.514 |
1.530 |
| C4' |
O4' |
1.443 |
1.444 |
| C4' |
C3' |
1.532 |
1.550 |
| O4' |
C1' |
1.444 |
1.438 |
| C3' |
N3' |
1.474 |
1.464 |
| C3' |
C2' |
1.550 |
1.549 |
| N3' |
N4' |
1.135 |
1.124 |
| N4' |
N5' |
1.129 |
1.124 |
| C2' |
C1' |
1.560 |
1.541 |
| C1' |
N1 |
1.511 |
1.465 |
| N1 |
C2 |
1.385 |
1.346 |
| N1 |
C6 |
1.414 |
1.369 |
| C2 |
O2 |
1.225 |
1.216 |
| C2 |
N3 |
1.373 |
1.346 |
| N3 |
C4 |
1.373 |
1.349 |
| C4 |
O4 |
1.225 |
1.218 |
| C4 |
C5 |
1.440 |
1.415 |
| C5 |
C5A |
1.511 |
1.507 |
| C5 |
C6 |
1.374 |
1.350 |
| O5' |
HO5' |
0.950 |
0.967 |
| C5' |
H5' |
1.100 |
1.090 |
| C5' |
H5'A |
1.100 |
1.090 |
| C4' |
H4' |
1.100 |
1.090 |
| C3' |
H3' |
1.100 |
1.090 |
| C2' |
H2' |
1.100 |
1.090 |
| C2' |
H2'A |
1.101 |
1.090 |
| C1' |
H1' |
1.100 |
1.090 |
| N3 |
HN3 |
1.000 |
0.970 |
| C5A |
H5A |
1.100 |
1.090 |
| C5A |
H5AA |
1.100 |
1.090 |
| C5A |
H5AB |
1.100 |
1.090 |
| C6 |
H6 |
1.080 |
1.080 |
Bond Angles for AZZ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
C5' |
C4' |
109.7 |
109.5 |
| C5' |
O5' |
HO5' |
109.5 |
114.0 |
| O5' |
C5' |
H5' |
109.4 |
109.5 |
| O5' |
C5' |
H5'A |
109.4 |
109.5 |
| C5' |
C4' |
O4' |
109.4 |
110.6 |
| C5' |
C4' |
C3' |
109.8 |
110.6 |
| C4' |
C5' |
H5' |
109.4 |
109.5 |
| C4' |
C5' |
H5'A |
109.4 |
109.5 |
| C5' |
C4' |
H4' |
110.0 |
110.5 |
| O4' |
C4' |
C3' |
106.9 |
103.5 |
| C4' |
O4' |
C1' |
108.7 |
107.0 |
| O4' |
C4' |
H4' |
111.0 |
110.6 |
| C4' |
C3' |
N3' |
111.6 |
110.9 |
| C4' |
C3' |
C2' |
103.5 |
102.1 |
| C3' |
C4' |
H4' |
109.7 |
110.7 |
| C4' |
C3' |
H3' |
108.8 |
110.9 |
| O4' |
C1' |
C2' |
107.7 |
107.3 |
| O4' |
C1' |
N1 |
107.5 |
109.9 |
| O4' |
C1' |
H1' |
110.4 |
109.8 |
| N3' |
C3' |
C2' |
114.6 |
110.9 |
| C3' |
N3' |
N4' |
120.8 |
120.0 |
| N3' |
C3' |
H3' |
109.5 |
110.8 |
| C3' |
C2' |
C1' |
104.6 |
104.2 |
| C2' |
C3' |
H3' |
108.6 |
110.9 |
| C3' |
C2' |
H2' |
110.7 |
110.5 |
| C3' |
C2' |
H2'A |
110.7 |
110.5 |
| N3' |
N4' |
N5' |
179.3 |
179.9 |
| C2' |
C1' |
N1 |
113.1 |
109.9 |
| C1' |
C2' |
H2' |
110.7 |
110.5 |
| C1' |
C2' |
H2'A |
110.7 |
110.5 |
| C2' |
C1' |
H1' |
108.8 |
109.9 |
| C1' |
N1 |
C2 |
119.3 |
119.7 |
| C1' |
N1 |
C6 |
121.3 |
119.7 |
| N1 |
C1' |
H1' |
109.4 |
110.0 |
| C2 |
N1 |
C6 |
119.4 |
120.6 |
| N1 |
C2 |
O2 |
120.5 |
119.5 |
| N1 |
C2 |
N3 |
120.4 |
120.9 |
| N1 |
C6 |
C5 |
120.8 |
119.7 |
| N1 |
C6 |
H6 |
119.6 |
120.1 |
| O2 |
C2 |
N3 |
119.1 |
119.6 |
| C2 |
N3 |
C4 |
121.3 |
120.3 |
| C2 |
N3 |
HN3 |
119.3 |
119.8 |
| N3 |
C4 |
O4 |
119.9 |
120.3 |
| N3 |
C4 |
C5 |
119.5 |
119.4 |
| C4 |
N3 |
HN3 |
119.4 |
119.9 |
| O4 |
C4 |
C5 |
120.6 |
120.3 |
| C4 |
C5 |
C5A |
121.0 |
120.4 |
| C4 |
C5 |
C6 |
118.6 |
119.2 |
| C5A |
C5 |
C6 |
120.4 |
120.4 |
| C5 |
C5A |
H5A |
109.5 |
109.5 |
| C5 |
C5A |
H5AA |
109.5 |
109.5 |
| C5 |
C5A |
H5AB |
109.5 |
109.4 |
| C5 |
C6 |
H6 |
119.6 |
120.2 |
| H5' |
C5' |
H5'A |
109.5 |
109.4 |
| H2' |
C2' |
H2'A |
109.5 |
110.5 |
| H5A |
C5A |
H5AA |
109.5 |
109.5 |
| H5A |
C5A |
H5AB |
109.4 |
109.4 |
| H5AA |
C5A |
H5AB |
109.5 |
109.5 |
Torsion Angles for AZZ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O5' |
C5' |
C4' |
O4' |
62.9 |
66.5 |
| O5' |
C5' |
C4' |
C3' |
179.9 |
180.5 |
| C4' |
C5' |
O5' |
H5' |
240.0 |
240.0 |
| C4' |
C5' |
O5' |
H5'A |
120.0 |
120.0 |
| O5' |
C5' |
C4' |
H4' |
300.8 |
303.6 |
| H5' |
C5' |
O5' |
H5'A |
240.0 |
240.0 |
| C4' |
C5' |
O5' |
HO5' |
180.0 |
180.0 |
| O5' |
C5' |
C4' |
H5' |
120.0 |
120.0 |
| O5' |
C5' |
C4' |
H5'A |
240.0 |
240.0 |
| O4' |
C4' |
C5' |
C3' |
243.0 |
245.9 |
| C5' |
C4' |
O4' |
C1' |
148.2 |
158.6 |
| O4' |
C4' |
C5' |
H4' |
122.1 |
122.9 |
| C5' |
C4' |
C3' |
N3' |
88.8 |
86.3 |
| C5' |
C4' |
C3' |
C2' |
212.6 |
204.5 |
| C3' |
C4' |
C5' |
H4' |
239.1 |
237.0 |
| C5' |
C4' |
C3' |
H3' |
327.9 |
322.7 |
| H5' |
C5' |
C4' |
H5'A |
120.0 |
120.0 |
| C5' |
C4' |
O4' |
C3' |
118.9 |
118.5 |
| O4' |
C4' |
C5' |
H5' |
302.8 |
306.4 |
| O4' |
C4' |
C5' |
H5'A |
182.9 |
186.5 |
| C5' |
C4' |
O4' |
H4' |
238.5 |
237.2 |
| O4' |
C4' |
C3' |
N3' |
207.4 |
204.8 |
| O4' |
C4' |
C3' |
C2' |
331.1 |
323.0 |
| C3' |
C4' |
O4' |
H4' |
119.6 |
118.7 |
| O4' |
C4' |
C3' |
H3' |
86.5 |
81.2 |
| C4' |
O4' |
C1' |
C2' |
342.7 |
333.5 |
| C4' |
O4' |
C1' |
N1 |
220.5 |
214.0 |
| C4' |
O4' |
C1' |
H1' |
101.3 |
92.9 |
| C5' |
C4' |
C3' |
O4' |
241.4 |
241.5 |
| C3' |
C4' |
C5' |
H5' |
59.9 |
60.5 |
| C3' |
C4' |
C5' |
H5'A |
299.9 |
300.5 |
| C5' |
C4' |
C3' |
H4' |
121.0 |
122.9 |
| C3' |
C4' |
O4' |
C1' |
29.4 |
40.1 |
| O4' |
C4' |
C3' |
H4' |
239.6 |
241.4 |
| N3' |
C3' |
C4' |
C2' |
236.3 |
241.8 |
| C4' |
C3' |
N3' |
N4' |
181.3 |
185.0 |
| N3' |
C3' |
C4' |
H3' |
121.0 |
123.6 |
| C4' |
C3' |
C2' |
C1' |
17.7 |
20.9 |
| C2' |
C3' |
C4' |
H3' |
244.7 |
241.8 |
| C4' |
C3' |
C2' |
H2' |
136.9 |
139.6 |
| C4' |
C3' |
C2' |
H2'A |
258.5 |
262.2 |
| C1' |
O4' |
C4' |
C3' |
29.4 |
40.1 |
| C1' |
O4' |
C4' |
H4' |
269.7 |
281.4 |
| C3' |
C2' |
C1' |
O4' |
358.8 |
2.0 |
| C2' |
C1' |
O4' |
N1 |
122.1 |
119.4 |
| O4' |
C1' |
C2' |
H2' |
239.6 |
243.3 |
| O4' |
C1' |
C2' |
H2'A |
118.0 |
120.7 |
| C2' |
C1' |
O4' |
H1' |
241.4 |
240.6 |
| O4' |
C1' |
N1 |
C2 |
305.0 |
53.6 |
| O4' |
C1' |
N1 |
C6 |
124.7 |
233.3 |
| N1 |
C1' |
O4' |
H1' |
119.3 |
121.1 |
| C4' |
C3' |
N3' |
C2' |
117.2 |
112.7 |
| N3' |
C3' |
C4' |
H4' |
327.9 |
323.4 |
| C4' |
C3' |
N3' |
H3' |
239.4 |
236.3 |
| N3' |
C3' |
C2' |
C1' |
139.5 |
139.1 |
| C2' |
C3' |
N3' |
H3' |
122.2 |
123.6 |
| N3' |
C3' |
C2' |
H2' |
258.7 |
257.8 |
| N3' |
C3' |
C2' |
H2'A |
20.3 |
20.4 |
| C3' |
N3' |
N4' |
N5' |
96.0 |
332.3 |
| C4' |
C3' |
C2' |
N3' |
238.2 |
241.8 |
| C2' |
C3' |
C4' |
H4' |
91.6 |
81.6 |
| C4' |
C3' |
C2' |
H3' |
115.5 |
118.2 |
| O4' |
C1' |
C2' |
C3' |
358.8 |
2.0 |
| C2' |
C3' |
N3' |
N4' |
64.1 |
72.3 |
| N3' |
C3' |
C2' |
H3' |
237.2 |
236.4 |
| C3' |
C2' |
C1' |
N1 |
117.5 |
121.4 |
| C1' |
C2' |
C3' |
H2' |
240.8 |
241.3 |
| C1' |
C2' |
C3' |
H2'A |
119.2 |
118.7 |
| C3' |
C2' |
C1' |
H1' |
239.2 |
242.6 |
| H2' |
C2' |
C3' |
H2'A |
238.4 |
237.3 |
| N4' |
N3' |
C3' |
C2' |
64.1 |
72.3 |
| N4' |
N3' |
C3' |
H3' |
301.9 |
308.7 |
| O4' |
C1' |
C2' |
N1 |
241.4 |
240.6 |
| O4' |
C1' |
C2' |
H1' |
119.6 |
119.4 |
| C1' |
C2' |
C3' |
H3' |
262.2 |
262.7 |
| C3' |
C2' |
C1' |
H2' |
119.2 |
118.7 |
| C3' |
C2' |
C1' |
H2'A |
240.8 |
241.3 |
| C2' |
C1' |
N1 |
C2 |
186.3 |
295.7 |
| C2' |
C1' |
N1 |
C6 |
6.0 |
115.5 |
| N1 |
C1' |
C2' |
H1' |
238.2 |
238.8 |
| H2' |
C2' |
C1' |
H2'A |
121.6 |
122.6 |
| O4' |
C1' |
N1 |
C2' |
118.7 |
117.8 |
| O4' |
C1' |
N1 |
H1' |
240.1 |
239.0 |
| N1 |
C1' |
C2' |
H2' |
358.2 |
2.7 |
| N1 |
C1' |
C2' |
H2'A |
236.7 |
240.1 |
| C2' |
C1' |
N1 |
H1' |
121.4 |
121.1 |
| C2 |
N1 |
C1' |
C6 |
180.3 |
180.3 |
| C1' |
N1 |
C2 |
O2 |
359.8 |
0.0 |
| C1' |
N1 |
C2 |
N3 |
179.7 |
180.0 |
| C1' |
N1 |
C6 |
C5 |
180.3 |
179.7 |
| C1' |
N1 |
C6 |
H6 |
0.3 |
360.0 |
| C1' |
N1 |
C2 |
C6 |
179.7 |
179.7 |
| C2 |
N1 |
C1' |
H1' |
64.9 |
174.6 |
| C2 |
N1 |
C6 |
C5 |
0.1 |
359.5 |
| C2 |
N1 |
C6 |
H6 |
180.1 |
179.7 |
| O2 |
C2 |
N1 |
N3 |
180.1 |
180.0 |
| N1 |
C2 |
N3 |
C4 |
0.0 |
360.0 |
| N1 |
C2 |
N3 |
HN3 |
180.0 |
180.0 |
| C1' |
N1 |
C6 |
C2 |
180.3 |
180.3 |
| C6 |
N1 |
C1' |
H1' |
244.6 |
354.3 |
| C6 |
N1 |
C2 |
O2 |
180.0 |
180.3 |
| C6 |
N1 |
C2 |
N3 |
360.0 |
0.3 |
| C4 |
C5 |
C6 |
N1 |
359.9 |
0.5 |
| C5A |
C5 |
C6 |
N1 |
179.9 |
180.3 |
| C5 |
C6 |
N1 |
H6 |
180.0 |
179.7 |
| O2 |
C2 |
N1 |
C6 |
180.0 |
180.3 |
| N1 |
C2 |
O2 |
N3 |
179.9 |
180.0 |
| O2 |
C2 |
N3 |
C4 |
180.0 |
180.0 |
| O2 |
C2 |
N3 |
HN3 |
359.9 |
360.0 |
| N3 |
C2 |
N1 |
C6 |
360.0 |
0.3 |
| N1 |
C2 |
N3 |
O2 |
180.1 |
180.0 |
| C2 |
N3 |
C4 |
O4 |
180.1 |
180.0 |
| C2 |
N3 |
C4 |
C5 |
360.0 |
0.0 |
| C4 |
N3 |
C2 |
HN3 |
180.0 |
180.0 |
| C2 |
N3 |
C4 |
HN3 |
180.0 |
180.0 |
| O4 |
C4 |
N3 |
C5 |
180.1 |
180.0 |
| N3 |
C4 |
C5 |
C5A |
180.1 |
180.0 |
| N3 |
C4 |
C5 |
C6 |
0.1 |
359.7 |
| N3 |
C4 |
O4 |
C5 |
179.9 |
180.0 |
| O4 |
C4 |
N3 |
HN3 |
0.1 |
0.0 |
| O4 |
C4 |
C5 |
C5A |
0.0 |
360.0 |
| O4 |
C4 |
C5 |
C6 |
179.9 |
179.7 |
| N1 |
C6 |
C5 |
C4 |
359.9 |
0.5 |
| N3 |
C4 |
C5 |
O4 |
180.1 |
180.0 |
| C5 |
C4 |
N3 |
HN3 |
180.0 |
180.0 |
| C5A |
C5 |
C4 |
C6 |
180.1 |
180.3 |
| C4 |
C5 |
C5A |
H5A |
180.0 |
359.9 |
| C4 |
C5 |
C5A |
H5AA |
300.0 |
120.0 |
| C4 |
C5 |
C5A |
H5AB |
60.0 |
240.0 |
| C4 |
C5 |
C6 |
H6 |
179.9 |
180.3 |
| N1 |
C6 |
C5 |
C5A |
179.9 |
180.3 |
| C4 |
C5 |
C5A |
C6 |
179.9 |
179.7 |
| C5A |
C5 |
C6 |
H6 |
359.9 |
360.0 |
| H5A |
C5A |
C5 |
H5AA |
240.0 |
239.9 |
| H5A |
C5A |
C5 |
H5AB |
120.0 |
120.0 |
| H5AA |
C5A |
C5 |
H5AB |
240.0 |
240.0 |
| N1 |
C6 |
C5 |
H6 |
180.0 |
180.3 |
| C4 |
C5 |
C6 |
C5A |
180.1 |
180.3 |
| C6 |
C5 |
C5A |
H5A |
0.0 |
180.2 |
| C6 |
C5 |
C5A |
H5AA |
120.1 |
300.3 |
| C6 |
C5 |
C5A |
H5AB |
240.1 |
60.3 |
| HO5' |
O5' |
C5' |
C4' |
180.0 |
180.0 |
| HO5' |
O5' |
C5' |
H5' |
300.0 |
300.0 |
| HO5' |
O5' |
C5' |
H5'A |
60.0 |
60.0 |
| O5' |
C5' |
H5' |
C4' |
239.8 |
240.0 |
| H5' |
C5' |
O5' |
HO5' |
300.0 |
300.0 |
| O5' |
C5' |
H5' |
H5'A |
119.9 |
120.0 |
| H5' |
C5' |
C4' |
O4' |
302.8 |
306.4 |
| H5' |
C5' |
C4' |
C3' |
59.9 |
60.5 |
| C4' |
C5' |
H5' |
H5'A |
240.1 |
240.0 |
| H5' |
C5' |
C4' |
H4' |
180.7 |
183.5 |
| O5' |
C5' |
H5'A |
C4' |
120.2 |
120.0 |
| H5'A |
C5' |
O5' |
HO5' |
60.0 |
60.0 |
| O5' |
C5' |
H5'A |
H5' |
240.1 |
240.0 |
| H5'A |
C5' |
C4' |
O4' |
182.9 |
186.5 |
| H5'A |
C5' |
C4' |
C3' |
299.9 |
300.5 |
| C4' |
C5' |
H5'A |
H5' |
119.9 |
120.0 |
| H5'A |
C5' |
C4' |
H4' |
60.8 |
63.6 |
| C5' |
C4' |
H4' |
O4' |
121.2 |
122.9 |
| C5' |
C4' |
H4' |
C3' |
239.1 |
237.1 |
| H4' |
C4' |
C5' |
H5' |
180.7 |
183.5 |
| H4' |
C4' |
C5' |
H5'A |
60.8 |
63.6 |
| O4' |
C4' |
H4' |
C3' |
117.9 |
114.2 |
| H4' |
C4' |
O4' |
C1' |
269.7 |
281.4 |
| H4' |
C4' |
C3' |
N3' |
327.9 |
323.4 |
| H4' |
C4' |
C3' |
C2' |
91.6 |
81.6 |
| H4' |
C4' |
C3' |
H3' |
206.9 |
199.8 |
| C4' |
C3' |
H3' |
N3' |
122.3 |
123.7 |
| C4' |
C3' |
H3' |
C2' |
248.0 |
247.3 |
| H3' |
C3' |
C4' |
H4' |
206.9 |
199.8 |
| N3' |
C3' |
H3' |
C2' |
125.7 |
123.6 |
| H3' |
C3' |
N3' |
N4' |
301.9 |
308.7 |
| H3' |
C3' |
C2' |
C1' |
262.2 |
262.7 |
| H3' |
C3' |
C2' |
H2' |
21.4 |
21.4 |
| H3' |
C3' |
C2' |
H2'A |
143.0 |
144.0 |
| C3' |
C2' |
H2' |
C1' |
244.6 |
245.2 |
| H2' |
C2' |
C3' |
H3' |
21.4 |
21.4 |
| C3' |
C2' |
H2' |
H2'A |
122.3 |
122.6 |
| H2' |
C2' |
C1' |
N1 |
358.2 |
2.7 |
| C1' |
C2' |
H2' |
H2'A |
237.7 |
237.4 |
| H2' |
C2' |
C1' |
H1' |
120.0 |
123.9 |
| C3' |
C2' |
H2'A |
C1' |
115.4 |
114.8 |
| H2'A |
C2' |
C3' |
H3' |
143.0 |
144.0 |
| C3' |
C2' |
H2'A |
H2' |
237.7 |
237.4 |
| H2'A |
C2' |
C1' |
N1 |
236.7 |
240.1 |
| C1' |
C2' |
H2'A |
H2' |
122.3 |
122.6 |
| H2'A |
C2' |
C1' |
H1' |
358.4 |
1.3 |
| O4' |
C1' |
H1' |
C2' |
242.1 |
242.2 |
| O4' |
C1' |
H1' |
N1 |
118.1 |
121.0 |
| C2' |
C1' |
H1' |
N1 |
236.1 |
238.9 |
| H1' |
C1' |
C2' |
H2' |
120.0 |
123.9 |
| H1' |
C1' |
C2' |
H2'A |
358.4 |
1.3 |
| H1' |
C1' |
N1 |
C2 |
64.9 |
174.6 |
| H1' |
C1' |
N1 |
C6 |
244.6 |
354.3 |
| C2 |
N3 |
HN3 |
C4 |
180.0 |
180.0 |
| HN3 |
N3 |
C4 |
O4 |
0.1 |
0.0 |
| HN3 |
N3 |
C4 |
C5 |
180.0 |
180.0 |
| H5A |
C5A |
C5 |
C6 |
0.0 |
180.2 |
| C5 |
C5A |
H5A |
H5AA |
120.0 |
120.1 |
| C5 |
C5A |
H5A |
H5AB |
240.0 |
240.0 |
| H5AA |
C5A |
H5A |
H5AB |
120.0 |
120.0 |
| H5AA |
C5A |
C5 |
C6 |
120.1 |
300.3 |
| C5 |
C5A |
H5AA |
H5A |
240.0 |
239.9 |
| C5 |
C5A |
H5AA |
H5AB |
120.0 |
120.0 |
| H5A |
C5A |
H5AA |
H5AB |
240.1 |
240.1 |
| H5AB |
C5A |
C5 |
C6 |
240.1 |
60.3 |
| C5 |
C5A |
H5AB |
H5A |
120.0 |
120.0 |
| C5 |
C5A |
H5AB |
H5AA |
240.0 |
240.0 |
| H5A |
C5A |
H5AB |
H5AA |
120.0 |
120.0 |
| N1 |
C6 |
H6 |
C5 |
180.0 |
179.7 |