Atom Nomenclature for AZ7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for AZ7

Atom Name (V3) Atom Name (V2)
CL6 CL6
C5 C5
C6 C6
C1 C1
CL5 CL5
C4 C4
C3 C3
N9 N9
C8 C8
N7 N7
C2 C2
C10 C10
C11 C11
C19 C19
C20 C20
O22 O22
O21 O21
C12 C12
C17 C17
C16 C16
C15 C15
CL9 CL9
C14 C14
C13 C13
H6 H6
H4 H4
H7 H7
H101 H101
H102 H102
H11 H11
H191 H191
H192 H192
H21 H21
H17 H17
H13 H13
H16 H16
H14 H14