PDB Chemical Component AZ1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AZ1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C	C2	1.540	1.507
C	OXT	1.349	1.341
C	O	1.226	1.209
C2	C3	1.549	1.530
C2	H21	1.114	1.090
C2	H22	1.116	1.090
C3	C4	1.543	1.530
C3	H31	1.116	1.090
C3	H32	1.115	1.090
C4	C5	1.542	1.530
C4	H41	1.115	1.090
C4	H42	1.115	1.090
C5	C6	1.544	1.529
C5	H51	1.115	1.090
C5	H52	1.115	1.090
C6	C7	1.540	1.529
C6	H61	1.115	1.090
C6	H62	1.115	1.090
C7	C8	1.532	1.529
C7	H71	1.114	1.090
C7	H72	1.115	1.090
C8	C9	1.541	1.507
C8	H81	1.114	1.090
C8	H82	1.116	1.090
C9	O2	1.395	1.208
C9	OXT2	1.251	1.342
OXT	HXT	0.950	0.966
OXT2	HXT2	0.950	0.966

Bond Angles for AZ1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C	OXT	121.8	120.1
C2	C	O	119.5	120.0
C	C2	C3	149.4	109.5
C	C2	H21	98.9	109.4
C	C2	H22	98.9	109.4
OXT	C	O	118.7	119.9
C	OXT	HXT	121.8	120.1
C3	C2	H21	99.0	109.5
C3	C2	H22	99.0	109.5
C2	C3	C4	131.8	109.5
C2	C3	H31	104.5	109.5
C2	C3	H32	104.4	109.5
H21	C2	H22	107.5	109.5
C4	C3	H31	104.5	109.5
C4	C3	H32	104.5	109.5
C3	C4	C5	124.3	109.5
C3	C4	H41	107.0	109.5
C3	C4	H42	106.9	109.5
H31	C3	H32	104.5	109.5
C5	C4	H41	107.0	109.5
C5	C4	H42	107.0	109.5
C4	C5	C6	116.9	109.5
C4	C5	H51	109.5	109.5
C4	C5	H52	109.5	109.5
H41	C4	H42	102.7	109.5
C6	C5	H51	109.6	109.4
C6	C5	H52	109.6	109.4
C5	C6	C7	131.0	109.5
C5	C6	H61	104.7	109.5
C5	C6	H62	104.7	109.5
H51	C5	H52	100.6	109.5
C7	C6	H61	104.8	109.5
C7	C6	H62	104.8	109.5
C6	C7	C8	124.5	109.5
C6	C7	H71	106.9	109.4
C6	C7	H72	106.9	109.4
H61	C6	H62	104.3	109.4
C8	C7	H71	106.9	109.4
C8	C7	H72	106.9	109.4
C7	C8	C9	118.0	109.6
C7	C8	H81	109.1	109.5
C7	C8	H82	109.1	109.5
H71	C7	H72	102.8	109.5
C9	C8	H81	109.2	109.5
C9	C8	H82	109.1	109.5
C8	C9	O2	119.5	119.9
C8	C9	OXT2	117.1	120.1
H81	C8	H82	100.9	109.4
O2	C9	OXT2	123.4	120.0
C9	OXT2	HXT2	117.1	120.1

Torsion Angles for AZ1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
OXT	C	C2	O	180.1	180.0
C2	C	OXT	HXT	180.0	180.0
C3	C2	C	H21	234.7	120.0
C3	C2	C	H22	125.2	240.0
C	C2	C3	C4	179.7	180.0
C	C2	C3	H31	304.9	60.0
C	C2	C3	H32	54.4	300.0
H21	C2	C	H22	250.5	120.0
C2	C	OXT	O	179.9	180.0
OXT	C	C2	C3	179.9	180.0
OXT	C	C2	H21	305.2	60.0
OXT	C	C2	H22	54.7	300.0
C2	C	O	OXT	180.1	180.0
O	C	C2	C3	359.8	-0.0
O	C	C2	H21	125.1	240.0
O	C	C2	H22	234.6	120.0
O	C	OXT	HXT	0.1	-0.0
C3	C2	C	OXT	179.9	180.0
C3	C2	C	O	359.8	-0.0
C	C2	C3	H21	125.3	240.0
C	C2	C3	H22	234.8	120.0
H21	C2	C3	H22	109.5	240.0
C4	C3	C2	H31	234.7	120.0
C4	C3	C2	H32	125.3	240.0
C2	C3	C4	C5	145.2	180.0
C2	C3	C4	H41	270.5	60.0
C2	C3	C4	H42	20.0	300.0
H31	C3	C2	H32	250.6	120.0
H21	C2	C	OXT	305.2	60.0
H21	C2	C	O	125.1	240.0
C	C2	H21	C3	204.9	120.0
C	C2	H21	H22	102.4	240.0
C3	C2	H21	H22	257.5	120.0
H21	C2	C3	C4	54.4	300.0
H21	C2	C3	H31	179.7	180.0
H21	C2	C3	H32	289.1	60.0
H22	C2	C	OXT	54.7	300.0
H22	C2	C	O	234.6	120.0
C	C2	H22	C3	155.1	240.0
C	C2	H22	H21	257.6	120.0
C3	C2	H22	H21	102.5	240.0
H22	C2	C3	C4	304.9	60.0
H22	C2	C3	H31	70.2	300.0
H22	C2	C3	H32	179.6	180.0
C4	C3	C2	H21	54.4	300.0
C4	C3	C2	H22	304.9	60.0
C2	C3	C4	H31	125.3	240.0
C2	C3	C4	H32	234.7	120.0
H31	C3	C4	H32	109.5	240.0
C5	C4	C3	H41	234.7	120.0
C5	C4	C3	H42	125.3	240.0
C3	C4	C5	C6	163.0	180.0
C3	C4	C5	H51	288.3	60.0
C3	C4	C5	H52	37.7	300.0
H41	C4	C3	H42	250.5	120.0
H31	C3	C2	H21	179.7	180.0
H31	C3	C2	H22	70.2	300.0
C2	C3	H31	C4	218.9	120.0
C2	C3	H31	H32	109.4	240.0
C4	C3	H31	H32	250.5	120.0
H31	C3	C4	C5	20.0	300.0
H31	C3	C4	H41	145.2	180.0
H31	C3	C4	H42	254.7	60.0
H32	C3	C2	H21	289.1	60.0
H32	C3	C2	H22	179.6	180.0
C2	C3	H32	C4	141.1	240.0
C2	C3	H32	H31	250.6	120.0
C4	C3	H32	H31	109.5	240.0
H32	C3	C4	C5	270.5	60.0
H32	C3	C4	H41	35.8	300.0
H32	C3	C4	H42	145.2	180.0
C5	C4	C3	H31	20.0	300.0
C5	C4	C3	H32	270.5	60.0
C3	C4	C5	H41	125.3	240.0
C3	C4	C5	H42	234.8	120.0
H41	C4	C5	H42	109.5	240.0
C6	C5	C4	H51	234.7	120.0
C6	C5	C4	H52	125.3	240.0
C4	C5	C6	C7	211.7	180.0
C4	C5	C6	H61	337.0	60.0
C4	C5	C6	H62	86.5	300.0
H51	C5	C4	H52	250.6	120.0
H41	C4	C3	H31	145.2	180.0
H41	C4	C3	H32	35.8	300.0
C3	C4	H41	C5	224.8	120.0
C3	C4	H41	H42	112.4	240.0
C5	C4	H41	H42	247.5	120.0
H41	C4	C5	C6	37.7	300.0
H41	C4	C5	H51	163.0	180.0
H41	C4	C5	H52	272.4	60.0
H42	C4	C3	H31	254.7	60.0
H42	C4	C3	H32	145.2	180.0
C3	C4	H42	C5	135.2	240.0
C3	C4	H42	H41	247.6	120.0
C5	C4	H42	H41	112.4	240.0
H42	C4	C5	C6	288.2	60.0
H42	C4	C5	H51	53.5	300.0
H42	C4	C5	H52	162.9	180.0
C6	C5	C4	H41	37.7	300.0
C6	C5	C4	H42	288.2	60.0
C4	C5	C6	H51	125.2	240.0
C4	C5	C6	H52	234.7	120.0
H51	C5	C6	H52	109.5	240.0
C7	C6	C5	H61	234.7	120.0
C7	C6	C5	H62	125.3	240.0
C5	C6	C7	C8	340.5	180.0
C5	C6	C7	H71	105.7	60.0
C5	C6	C7	H72	215.3	300.0
H61	C6	C5	H62	250.5	119.9
H51	C5	C4	H41	163.0	180.0
H51	C5	C4	H42	53.5	300.0
C4	C5	H51	C6	230.6	120.0
C4	C5	H51	H52	115.3	240.0
C6	C5	H51	H52	244.7	120.0
H51	C5	C6	C7	86.5	300.0
H51	C5	C6	H61	211.8	180.0
H51	C5	C6	H62	321.2	60.0
H52	C5	C4	H41	272.4	60.0
H52	C5	C4	H42	162.9	180.0
C4	C5	H52	C6	129.4	240.0
C4	C5	H52	H51	244.8	120.0
C6	C5	H52	H51	115.3	240.0
H52	C5	C6	C7	337.0	60.0
H52	C5	C6	H61	102.3	300.0
H52	C5	C6	H62	211.8	180.0
C7	C6	C5	H51	86.5	300.0
C7	C6	C5	H52	337.0	60.0
C5	C6	C7	H61	125.2	240.0
C5	C6	C7	H62	234.8	120.0
H61	C6	C7	H62	109.5	240.1
C8	C7	C6	H71	234.8	120.0
C8	C7	C6	H72	125.2	240.0
C6	C7	C8	C9	89.4	180.0
C6	C7	C8	H81	214.7	60.0
C6	C7	C8	H82	324.1	300.0
H71	C7	C6	H72	250.5	120.0
H61	C6	C5	H51	211.8	180.0
H61	C6	C5	H52	102.3	300.0
C5	C6	H61	C7	219.6	120.1
C5	C6	H61	H62	109.7	240.0
C7	C6	H61	H62	250.1	120.0
H61	C6	C7	C8	215.3	300.0
H61	C6	C7	H71	340.5	180.0
H61	C6	C7	H72	90.0	60.0
H62	C6	C5	H51	321.2	60.0
H62	C6	C5	H52	211.8	180.0
C5	C6	H62	C7	140.4	239.9
C5	C6	H62	H61	250.3	120.0
C7	C6	H62	H61	109.9	240.0
H62	C6	C7	C8	105.7	60.0
H62	C6	C7	H71	231.0	300.0
H62	C6	C7	H72	340.5	180.0
C8	C7	C6	H61	215.3	300.0
C8	C7	C6	H62	105.7	60.0
C6	C7	C8	H71	125.2	240.0
C6	C7	C8	H72	234.8	120.0
H71	C7	C8	H72	109.5	240.0
C9	C8	C7	H81	234.7	120.0
C9	C8	C7	H82	125.3	240.0
C7	C8	C9	O2	243.4	360.0
C7	C8	C9	OXT2	64.1	180.0
H81	C8	C7	H82	250.6	119.9
H71	C7	C6	H61	340.5	180.0
H71	C7	C6	H62	231.0	300.0
C6	C7	H71	C8	224.7	120.1
C6	C7	H71	H72	112.4	240.0
C8	C7	H71	H72	247.6	120.0
H71	C7	C8	C9	324.1	300.0
H71	C7	C8	H81	89.4	180.0
H71	C7	C8	H82	198.9	60.0
H72	C7	C6	H61	90.0	60.0
H72	C7	C6	H62	340.5	180.0
C6	C7	H72	C8	135.3	239.9
C6	C7	H72	H71	247.6	120.0
C8	C7	H72	H71	112.4	240.0
H72	C7	C8	C9	214.6	60.0
H72	C7	C8	H81	339.9	300.0
H72	C7	C8	H82	89.3	180.0
C9	C8	C7	H71	324.1	300.0
C9	C8	C7	H72	214.6	60.0
C7	C8	C9	H81	125.3	240.0
C7	C8	C9	H82	234.7	120.0
H81	C8	C9	H82	109.4	240.1
O2	C9	C8	OXT2	179.4	180.0
C8	C9	OXT2	HXT2	180.0	180.0
H81	C8	C7	H71	89.4	180.0
H81	C8	C7	H72	339.9	300.0
C7	C8	H81	C9	229.7	120.1
C7	C8	H81	H82	114.9	240.0
C9	C8	H81	H82	245.2	119.9
H81	C8	C9	O2	118.2	120.0
H81	C8	C9	OXT2	298.8	300.0
H82	C8	C7	H71	198.9	60.0
H82	C8	C7	H72	89.3	180.0
C7	C8	H82	C9	130.3	239.9
C7	C8	H82	H81	245.2	120.0
C9	C8	H82	H81	114.9	240.1
H82	C8	C9	O2	8.7	240.0
H82	C8	C9	OXT2	189.3	60.0
O2	C9	C8	H81	118.2	120.0
O2	C9	C8	H82	8.7	240.0
C8	C9	O2	OXT2	180.7	180.0
O2	C9	OXT2	HXT2	0.7	-0.0
OXT2	C9	C8	H81	298.8	300.0
OXT2	C9	C8	H82	189.3	60.0
C8	C9	OXT2	O2	179.4	180.0
HXT	OXT	C	O	0.1	360.0