PDB Chemical Component AYQ

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AYQ

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
CAA HAA 1.100 1.090
CAA HAAA 1.100 1.090
OAJ CBD 1.230 1.213
OAM PBL 1.610 1.481
OAK PBL 1.479 1.610
OAK HOAK 0.950 0.966
OAL HOAL 0.950 0.967
CAN CAP 1.392 1.381
CAN HAN 1.080 1.080
CAO CAQ 1.390 1.382
CAO CBE 1.392 1.387
CAO HAO 1.080 1.080
CAP HAP 1.080 1.079
CAQ CBF 1.391 1.382
CAQ HAQ 1.080 1.080
NAU CAA 1.471 1.464
NAU CBC 1.330 1.348
OAX CBE 1.362 1.359
OAX PBL 1.613 1.610
CBC OAI 1.229 1.213
CBE CAN 1.390 1.388
CBF CAP 1.389 1.383
CBF CBK 1.533 1.507
CBI CBC 1.531 1.506
CBI CBJ 1.528 1.530
CBI HBI 1.100 1.090
CBJ CBD 1.530 1.507
CBJ HBJ 1.100 1.089
CBK CBI 1.532 1.531
CBK CBJ 1.530 1.530
CBK HBK 1.100 1.090
PBL OAL 1.610 1.610
CAA H28 1.100 1.090
NAU H29 1.000 0.969
N CA 1.471 1.465
N HN 1.000 0.970
CA C 1.530 1.507
CA CB 1.529 1.530
CA HA 1.100 1.089
C O 1.229 1.213
CB CG 1.530 1.530
CB HB 1.100 1.090
CB HBA 1.100 1.090
CG CD 1.529 1.507
CG HG 1.100 1.090
CG HGA 1.100 1.091
CD OE1 1.232 1.213
CD NE2 1.330 1.348
NE2 HNE2 0.999 0.970
NE2 HNEA 1.000 0.970
NAV CBH 1.470 1.465
NAV HNAV 1.000 0.970
CBH CBA 1.530 1.507
CBH CAT 1.530 1.531
CBH HBH 1.100 1.090
CBA OAG 1.229 1.213
CAT CAZ 1.530 1.507
CAT HAT 1.100 1.090
CAT HATA 1.100 1.090
CAZ OAF 1.230 1.212
CAZ NAC 1.329 1.348
NAC HNAC 1.000 0.971
NAC HNAA 1.000 0.969
NAD HNAD 1.000 0.970
NAD HNAB 1.000 0.969
CBD N 1.330 1.348
C NAV 1.332 1.348
CBA NAD 1.330 1.348

Bond Angles for AYQ

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
HAA CAA HAAA 109.5 109.5
NAU CAA HAA 109.5 109.5
HAA CAA H28 109.5 109.4
NAU CAA HAAA 109.4 109.5
HAAA CAA H28 109.5 109.4
OAJ CBD N 123.8 120.0
OAM PBL OAK 122.0 109.5
OAM PBL OAX 94.8 109.4
OAM PBL OAL 112.3 109.5
PBL OAK HOAK 109.5 114.0
OAK PBL OAX 99.1 109.5
OAK PBL OAL 121.6 109.5
PBL OAL HOAL 109.5 113.9
CAP CAN HAN 119.8 120.0
CAN CAP HAP 119.9 120.0
CBE CAN HAN 119.8 120.0
CAQ CAO CBE 120.3 120.0
CAQ CAO HAO 119.9 120.0
CAO CAQ CBF 120.4 120.0
CAO CAQ HAQ 119.8 120.0
CBE CAO HAO 119.9 120.1
CAO CBE OAX 119.4 120.1
CBF CAP HAP 119.9 120.0
CBF CAQ HAQ 119.8 120.0
CAQ CBF CBK 119.5 120.0
NAU CAA H28 109.5 109.5
CBC NAU H29 121.1 120.0
CBE OAX PBL 114.8 114.0
CBF CBK CBI 118.5 117.5
CBF CBK CBJ 115.1 117.5
CBF CBK HBK 93.8 115.6
CBJ CBI HBI 136.1 117.5
CBI CBJ HBJ 136.1 117.5
CBK CBI HBI 134.0 117.5
CBJ CBD N 114.9 120.0
CBK CBJ HBJ 134.0 117.5
CA N HN 118.6 120.0
N CA C 113.5 109.5
N CA CB 109.9 109.5
N CA HA 106.3 109.5
CBD N CA 122.8 120.0
CBD N HN 118.6 120.0
C CA CB 109.3 109.5
C CA HA 107.0 109.5
CA C O 120.2 120.0
CA C NAV 116.4 120.0
CB CA HA 110.8 109.5
CA CB CG 112.0 109.5
CA CB HB 108.6 109.5
CA CB HBA 108.7 109.5
O C NAV 123.4 120.0
CG CB HB 108.7 109.5
CG CB HBA 108.6 109.5
CB CG CD 111.9 109.5
CB CG HG 108.7 109.5
CB CG HGA 108.6 109.4
HB CB HBA 110.3 109.5
CD CG HG 108.7 109.5
CD CG HGA 108.7 109.5
CG CD OE1 120.5 120.0
CG CD NE2 115.5 120.0
HG CG HGA 110.3 109.5
OE1 CD NE2 124.0 120.0
CD NE2 HNE2 120.0 120.0
CD NE2 HNEA 120.0 120.0
HNE2 NE2 HNEA 120.0 120.0
CBH NAV HNAV 119.9 120.0
NAV CBH CBA 111.7 109.5
NAV CBH CAT 109.3 109.4
NAV CBH HBH 108.1 109.5
C NAV CBH 120.1 120.0
C NAV HNAV 119.9 119.9
CBA CBH CAT 109.6 109.5
CBA CBH HBH 107.8 109.5
CBH CBA OAG 120.6 120.0
CBH CBA NAD 115.3 120.0
CAT CBH HBH 110.3 109.4
CBH CAT CAZ 110.9 109.5
CBH CAT HAT 109.0 109.5
CBH CAT HATA 109.0 109.4
OAG CBA NAD 124.1 120.0
CAZ CAT HAT 109.0 109.5
CAZ CAT HATA 109.0 109.5
CAT CAZ OAF 121.1 120.1
CAT CAZ NAC 114.9 120.0
HAT CAT HATA 109.9 109.4
OAF CAZ NAC 124.0 119.9
CAZ NAC HNAC 120.0 120.0
CAZ NAC HNAA 120.0 120.0
HNAC NAC HNAA 120.0 120.0
HNAD NAD HNAB 120.0 120.0
CBA NAD HNAD 120.0 120.0
CBA NAD HNAB 120.0 120.0

Torsion Angles for AYQ

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
NAU CAA HAA HAAA 120.0 120.0
HAAA CAA HAA H28 120.0 119.9
NAU CAA HAA H28 240.0 239.9
NAU CAA HAAA HAA 240.0 240.0
HAA CAA HAAA H28 240.0 240.1
NAU CAA HAAA H28 120.0 120.1
CBJ CBD OAJ N 180.6 180.0
OAJ CBD N CA 3.2 0.0
OAJ CBD N HN 183.2 180.0
OAM PBL OAK HOAK 0.0 180.0
OAK PBL OAM OAX 103.8 120.0
OAK PBL OAM OAL 202.4 240.0
OAM PBL OAL HOAL 0.0 300.0
CBE OAX PBL OAM 314.0 55.0
OAM PBL OAK OAX 258.5 240.1
OAM PBL OAK OAL 155.5 120.0
OAK PBL OAL HOAL 157.7 60.0
CBE OAX PBL OAK 190.4 295.0
HOAK OAK PBL OAX 101.5 300.0
HOAK OAK PBL OAL 204.5 60.0
CBE CAN CAP HAN 180.0 180.3
CBF CAP CAN HAP 180.0 180.0
HAN CAN CAP HAP 359.7 360.0
CBE CAO CAQ HAO 180.0 180.7
CAQ CAO CBE OAX 172.9 179.5
CBF CAQ CAO HAQ 180.0 180.9
CAO CAQ CBF CBK 187.4 180.0
CAO CBE CAN HAN 181.2 180.2
CAQ CAO CBE HAO 180.0 179.3
CBE CAO CAQ CBF 360.0 0.8
CBE CAO CAQ HAQ 180.0 179.9
CAO CBE OAX PBL 113.5 90.0
CAQ CAO HAO CBE 180.0 180.7
HAO CAO CAQ CBF 180.0 180.1
HAO CAO CAQ HAQ 0.0 359.2
HAO CAO CBE OAX 352.9 0.2
HAP CAP CAN HAN 359.7 360.0
CBF CAQ CAO CBE 360.0 0.8
CBF CAQ CAO HAO 180.0 180.1
CAO CAQ CBF HAQ 180.0 179.1
CAQ CBF CAP HAP 179.2 180.0
CAQ CBF CBK CBI 247.7 293.4
CAQ CBF CBK CBJ 315.6 2.0
CAQ CBF CBK HBK 102.3 147.8
HAQ CAQ CAO CBE 180.0 179.9
HAQ CAQ CAO HAO 0.0 359.2
CAO CAQ HAQ CBF 180.0 180.9
HAQ CAQ CBF CBK 7.4 1.0
HAA CAA NAU HAAA 240.0 240.0
HAA CAA NAU H28 120.0 120.0
HAAA CAA NAU H28 240.0 240.0
CBC NAU CAA HAA 180.0 180.0
CBC NAU CAA HAAA 300.0 300.0
CBC NAU CAA H28 60.0 60.0
OAM PBL OAX CBE 314.0 55.0
OAK PBL OAX CBE 190.4 295.0
OAX CBE CAN HAN 7.4 0.2
OAX CBE CAO HAO 352.9 0.2
OAM PBL OAX OAK 123.5 120.0
OAM PBL OAX OAL 246.9 240.0
OAX PBL OAK HOAK 101.5 300.0
OAK PBL OAX OAL 123.4 120.1
OAX PBL OAL HOAL 262.3 180.0
CAP CAN CBE HAN 180.0 179.7
CBE CAN CAP HAP 179.7 180.3
CBF CAP CAN HAN 179.8 180.0
CAN CAP CBF HAP 180.0 180.0
CAO CAQ CBF CAP 1.0 359.4
CBK CBF CAP HAP 352.7 359.4
CBK CBF CAQ HAQ 7.4 1.0
CBF CBK CBI HBI 230.9 214.9
CBF CBK CBJ HBJ 17.2 0.0
CBI CBC NAU H29 15.0 360.0
CBF CBK CBI CBJ 104.0 107.5
CBF CBK CBJ CBI 250.3 252.5
CBK CBI CBJ HBI 123.8 107.5
CBI CBJ CBD N 152.1 111.4
CBK CBJ CBI HBJ 124.0 107.5
HBI CBI CBJ HBJ 112.2 145.0
OAJ CBD CBJ N 179.4 180.0
CBJ CBD N CA 182.6 180.0
CBJ CBD N HN 2.6 360.0
HBJ CBJ CBI HBI 112.2 145.0
HBJ CBJ CBD N 5.4 325.7
CBF CBK CBI HBK 231.5 215.0
CBJ CBI CBK HBI 233.1 252.5
CBK CBI CBJ HBJ 236.0 252.5
CBF CBK CBJ HBK 127.1 145.1
CBK CBJ CBI HBI 236.2 252.5
CBI CBJ CBK HBJ 233.1 252.5
CBJ CBK CBI HBI 126.9 107.5
CBK CBJ CBD N 219.4 180.0
CBF CBK HBK CBI 136.5 145.7
CBF CBK HBK CBJ 226.4 214.3
HBK CBK CBI HBI 359.4 360.0
HBK CBK CBJ HBJ 250.1 215.0
OAM PBL OAL OAK 202.3 240.0
OAM PBL OAL OAX 97.7 120.0
OAL PBL OAK HOAK 204.5 60.0
OAK PBL OAL OAX 255.4 240.0
HAA CAA H28 HAAA 120.0 119.9
NAU CAA H28 HAA 120.0 120.0
NAU CAA H28 HAAA 240.0 240.0
H29 NAU CAA HAA 360.0 360.0
H29 NAU CAA HAAA 120.0 120.0
H29 NAU CAA H28 240.0 240.0
CBD N CA HN 180.0 180.0
C CA N CB 122.7 120.0
C CA N HA 242.6 240.0
N CA C O 142.2 0.0
N CA C NAV 321.8 180.0
CB CA N HA 119.9 120.0
N CA CB CG 302.1 295.0
N CA CB HB 62.1 55.0
N CA CB HBA 182.1 175.0
HN N CA C 132.2 25.0
HN N CA CB 9.5 265.0
HN N CA HA 249.6 145.0
CBD N HN CA 180.0 180.0
C CA N HN 132.2 25.0
N CA C CB 236.9 240.0
N CA C HA 116.9 120.0
CBD N CA C 312.2 205.0
CB CA C HA 240.0 240.0
C CA CB CG 176.9 175.0
C CA CB HB 296.9 295.0
C CA CB HBA 56.9 55.0
O C CA NAV 180.4 180.0
CA C NAV CBH 181.6 180.0
CA C NAV HNAV 1.6 360.0
CB CA N HN 9.5 265.0
N CA CB C 125.2 120.0
N CA CB HA 242.8 240.0
CBD N CA CB 189.5 85.0
C CA CB HA 117.7 120.0
CB CA C O 265.3 120.0
CB CA C NAV 84.9 300.0
CG CB CA HB 240.0 240.0
CG CB CA HBA 120.0 120.0
CA CB CG CD 301.1 180.0
CA CB CG HG 61.1 300.1
CA CB CG HGA 181.1 60.0
HB CB CA HBA 240.0 240.0
HA CA N HN 249.6 145.0
N CA HA C 238.4 240.0
N CA HA CB 119.4 120.0
CBD N CA HA 69.6 325.0
C CA HA CB 241.0 240.0
HA CA C O 25.3 240.0
HA CA C NAV 204.9 60.0
HA CA CB CG 59.3 55.0
HA CA CB HB 179.3 175.0
HA CA CB HBA 299.3 295.0
O C CA CB 265.3 120.0
O C CA HA 25.3 240.0
CA C O NAV 179.6 180.0
O C NAV CBH 1.2 360.0
O C NAV HNAV 181.2 180.0
CG CB CA HA 59.3 55.0
CA CB CG HB 120.0 120.0
CA CB CG HBA 240.0 240.0
HB CB CG HBA 120.0 120.0
CD CG CB HG 240.0 239.9
CD CG CB HGA 120.0 120.0
CB CG CD OE1 141.0 0.0
CB CG CD NE2 321.1 180.0
HG CG CB HGA 240.0 240.0
HB CB CA HA 179.3 175.0
CA CB HB CG 238.0 240.0
CA CB HB HBA 119.0 120.0
CG CB HB HBA 241.0 240.0
HB CB CG CD 181.1 60.0
HB CB CG HG 301.1 180.0
HB CB CG HGA 61.1 300.0
HBA CB CA HA 299.3 295.0
CA CB HBA CG 122.0 120.0
CA CB HBA HB 241.0 240.0
CG CB HBA HB 119.0 120.0
HBA CB CG CD 61.1 300.0
HBA CB CG HG 181.1 60.1
HBA CB CG HGA 301.1 180.0
CD CG CB HB 181.1 60.0
CD CG CB HBA 61.1 300.0
CB CG CD HG 120.0 120.1
CB CG CD HGA 240.0 240.1
HG CG CD HGA 120.0 120.0
OE1 CD CG NE2 180.0 180.0
CG CD NE2 HNE2 180.0 0.1
CG CD NE2 HNEA 359.9 180.0
HG CG CB HB 301.1 180.0
HG CG CB HBA 181.1 60.1
CB CG HG CD 238.0 240.0
CB CG HG HGA 119.0 120.0
CD CG HG HGA 241.0 240.0
HG CG CD OE1 21.0 240.0
HG CG CD NE2 201.1 59.9
HGA CG CB HB 61.1 300.0
HGA CG CB HBA 301.1 180.0
CB CG HGA CD 122.0 120.0
CB CG HGA HG 241.0 240.0
CD CG HGA HG 119.0 120.0
HGA CG CD OE1 261.0 119.9
HGA CG CD NE2 81.1 299.9
OE1 CD CG HG 21.0 240.0
OE1 CD CG HGA 261.0 119.9
CG CD OE1 NE2 180.1 180.0
OE1 CD NE2 HNE2 0.0 180.1
OE1 CD NE2 HNEA 180.0 0.0
NE2 CD CG HG 201.1 59.9
NE2 CD CG HGA 81.1 299.9
CG CD NE2 OE1 180.0 180.0
HNE2 NE2 CD HNEA 180.0 180.1
CD NE2 HNE2 HNEA 180.0 179.9
CD NE2 HNEA HNE2 180.0 180.1
C NAV CBH HNAV 180.0 180.0
CBA CBH NAV CAT 121.4 120.0
CBA CBH NAV HBH 241.5 239.9
NAV CBH CBA OAG 204.0 0.1
NAV CBH CBA NAD 24.9 180.0
CAT CBH NAV HBH 120.1 120.0
NAV CBH CAT CAZ 61.8 295.0
NAV CBH CAT HAT 181.9 55.0
NAV CBH CAT HATA 301.8 175.0
HNAV NAV CBH CBA 65.3 95.0
HNAV NAV CBH CAT 303.9 335.0
HNAV NAV CBH HBH 183.8 215.1
C NAV HNAV CBH 180.0 180.0
CBA CBH NAV HNAV 65.3 95.0
NAV CBH CBA CAT 238.7 240.0
NAV CBH CBA HBH 118.6 120.0
C NAV CBH CBA 245.3 275.0
CAT CBH CBA HBH 239.9 240.0
CBA CBH CAT CAZ 299.1 175.0
CBA CBH CAT HAT 59.2 295.0
CBA CBH CAT HATA 179.1 55.0
OAG CBA CBH NAD 179.0 180.1
CBH CBA NAD HNAD 179.0 0.1
CBH CBA NAD HNAB 359.0 180.0
CAT CBH NAV HNAV 303.9 335.0
NAV CBH CAT CBA 122.7 120.0
NAV CBH CAT HBH 241.3 240.0
C NAV CBH CAT 123.9 155.0
CBA CBH CAT HBH 118.6 120.0
CAT CBH CBA OAG 325.2 120.0
CAT CBH CBA NAD 146.2 300.0
CAZ CAT CBH HAT 240.0 240.0
CAZ CAT CBH HATA 120.0 120.0
CBH CAT CAZ OAF 339.5 0.0
CBH CAT CAZ NAC 159.6 180.0
HAT CAT CBH HATA 240.0 240.1
HBH CBH NAV HNAV 183.8 215.1
NAV CBH HBH CBA 239.1 240.0
NAV CBH HBH CAT 119.5 120.0
C NAV CBH HBH 3.7 35.0
CBA CBH HBH CAT 240.4 240.0
HBH CBH CBA OAG 85.3 240.0
HBH CBH CBA NAD 266.3 59.9
HBH CBH CAT CAZ 180.6 55.0
HBH CBH CAT HAT 300.6 175.0
HBH CBH CAT HATA 60.6 294.9
OAG CBA CBH CAT 325.2 120.0
OAG CBA CBH HBH 85.3 240.0
CBH CBA OAG NAD 181.1 179.9
OAG CBA NAD HNAD 0.0 180.0
OAG CBA NAD HNAB 180.0 359.9
CAZ CAT CBH HBH 180.6 55.0
CBH CAT CAZ HAT 120.0 120.0
CBH CAT CAZ HATA 240.0 240.0
HAT CAT CAZ HATA 120.0 120.0
OAF CAZ CAT NAC 179.9 180.0
CAT CAZ NAC HNAC 179.9 360.0
CAT CAZ NAC HNAA 359.9 180.0
HAT CAT CBH HBH 300.6 175.0
CBH CAT HAT CAZ 238.8 240.0
CBH CAT HAT HATA 119.4 120.0
CAZ CAT HAT HATA 240.6 240.0
HAT CAT CAZ OAF 219.5 240.0
HAT CAT CAZ NAC 39.6 60.0
HATA CAT CBH HBH 60.6 294.9
CBH CAT HATA CAZ 121.2 120.0
CBH CAT HATA HAT 240.6 240.0
CAZ CAT HATA HAT 119.4 120.0
HATA CAT CAZ OAF 99.5 120.0
HATA CAT CAZ NAC 279.6 300.0
OAF CAZ CAT HAT 219.5 240.0
OAF CAZ CAT HATA 99.5 120.0
CAT CAZ OAF NAC 180.1 180.0
OAF CAZ NAC HNAC 360.0 179.9
OAF CAZ NAC HNAA 180.0 360.0
NAC CAZ CAT HAT 39.6 60.0
NAC CAZ CAT HATA 279.6 300.0
CAT CAZ NAC OAF 179.9 180.0
HNAC NAC CAZ HNAA 180.0 180.0
CAZ NAC HNAC HNAA 180.0 180.0
CAZ NAC HNAA HNAC 180.0 180.0
CBA NAD HNAD HNAB 180.0 179.9
CBA NAD HNAB HNAD 180.0 180.1
CA N CBD HN 180.0 180.0
NAV C CA CB 84.9 300.0
NAV C CA HA 204.9 60.0
CA C NAV O 180.4 180.0
CBH NAV C HNAV 180.0 180.0
NAD CBA CBH CAT 146.2 300.0
NAD CBA CBH HBH 266.3 59.9
CBH CBA NAD OAG 179.0 180.1
HNAD NAD CBA HNAB 180.0 180.1