PDB Chemical Component AYA
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AYA
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N |
CA |
1.459 |
1.464 |
| N |
CT |
1.335 |
1.348 |
| N |
H |
0.984 |
0.970 |
| CA |
CB |
1.525 |
1.530 |
| CA |
C |
1.532 |
1.506 |
| CA |
HA |
1.115 |
1.090 |
| CB |
HB1 |
1.116 |
1.090 |
| CB |
HB2 |
1.114 |
1.091 |
| CB |
HB3 |
1.115 |
1.089 |
| C |
O |
1.226 |
1.209 |
| C |
OXT |
1.338 |
1.342 |
| OXT |
HXT |
0.950 |
0.967 |
| CT |
OT |
1.232 |
1.213 |
| CT |
CM |
1.523 |
1.507 |
| CM |
HM1 |
1.116 |
1.090 |
| CM |
HM2 |
1.115 |
1.089 |
| CM |
HM3 |
1.114 |
1.090 |
Bond Angles for AYA
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CA |
N |
CT |
121.4 |
120.0 |
| CA |
N |
H |
116.5 |
120.0 |
| N |
CA |
CB |
108.1 |
109.5 |
| N |
CA |
C |
116.5 |
109.5 |
| N |
CA |
HA |
105.4 |
109.5 |
| CT |
N |
H |
114.3 |
120.0 |
| N |
CT |
OT |
121.3 |
120.0 |
| N |
CT |
CM |
116.5 |
120.0 |
| CB |
CA |
C |
108.9 |
109.5 |
| CB |
CA |
HA |
113.6 |
109.4 |
| CA |
CB |
HB1 |
108.1 |
109.5 |
| CA |
CB |
HB2 |
112.7 |
109.4 |
| CA |
CB |
HB3 |
112.7 |
109.5 |
| C |
CA |
HA |
104.5 |
109.5 |
| CA |
C |
O |
120.4 |
120.0 |
| CA |
C |
OXT |
115.4 |
120.1 |
| HB1 |
CB |
HB2 |
112.8 |
109.5 |
| HB1 |
CB |
HB3 |
112.7 |
109.5 |
| HB2 |
CB |
HB3 |
97.8 |
109.4 |
| O |
C |
OXT |
124.2 |
119.9 |
| C |
OXT |
HXT |
115.4 |
120.1 |
| OT |
CT |
CM |
122.0 |
119.9 |
| CT |
CM |
HM1 |
116.5 |
109.5 |
| CT |
CM |
HM2 |
109.7 |
109.5 |
| CT |
CM |
HM3 |
109.7 |
109.4 |
| HM1 |
CM |
HM2 |
109.6 |
109.5 |
| HM1 |
CM |
HM3 |
109.7 |
109.4 |
| HM2 |
CM |
HM3 |
100.5 |
109.5 |
Torsion Angles for AYA
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CT |
N |
CA |
H |
147.4 |
179.9 |
| CA |
N |
CT |
OT |
309.3 |
0.0 |
| CA |
N |
CT |
CM |
123.8 |
180.0 |
| CB |
CA |
N |
C |
237.1 |
240.0 |
| CB |
CA |
N |
HA |
121.8 |
119.9 |
| N |
CA |
CB |
HB1 |
180.0 |
60.1 |
| N |
CA |
CB |
HB2 |
305.3 |
180.0 |
| N |
CA |
CB |
HB3 |
54.8 |
300.0 |
| C |
CA |
N |
HA |
244.7 |
239.9 |
| N |
CA |
C |
O |
152.0 |
0.0 |
| N |
CA |
C |
OXT |
330.6 |
180.0 |
| CA |
N |
CT |
H |
211.9 |
180.1 |
| CT |
N |
CA |
CB |
173.6 |
89.9 |
| CT |
N |
CA |
C |
296.5 |
210.0 |
| CT |
N |
CA |
HA |
51.8 |
330.0 |
| OT |
CT |
N |
CM |
185.4 |
180.1 |
| N |
CT |
CM |
HM1 |
180.0 |
180.0 |
| N |
CT |
CM |
HM2 |
305.2 |
300.1 |
| N |
CT |
CM |
HM3 |
54.7 |
60.1 |
| CA |
N |
H |
CT |
149.8 |
179.9 |
| H |
N |
CA |
CB |
26.1 |
270.0 |
| H |
N |
CA |
C |
149.0 |
30.0 |
| H |
N |
CA |
HA |
264.4 |
150.1 |
| H |
N |
CT |
OT |
97.4 |
180.0 |
| H |
N |
CT |
CM |
272.0 |
359.9 |
| CB |
CA |
N |
CT |
173.6 |
89.9 |
| CB |
CA |
N |
H |
26.1 |
270.0 |
| N |
CA |
CB |
C |
127.4 |
120.1 |
| N |
CA |
CB |
HA |
243.4 |
240.1 |
| C |
CA |
CB |
HA |
116.0 |
120.0 |
| CB |
CA |
C |
O |
274.5 |
120.1 |
| CB |
CA |
C |
OXT |
93.1 |
300.1 |
| HB1 |
CB |
CA |
HB2 |
234.7 |
240.0 |
| HB1 |
CB |
CA |
HB3 |
125.2 |
120.1 |
| HB2 |
CB |
CA |
HB3 |
250.5 |
240.0 |
| C |
CA |
N |
CT |
296.5 |
210.0 |
| C |
CA |
N |
H |
149.0 |
30.0 |
| N |
CA |
C |
CB |
237.5 |
240.0 |
| N |
CA |
C |
HA |
115.8 |
120.0 |
| CB |
CA |
C |
HA |
238.3 |
240.1 |
| C |
CA |
CB |
HB1 |
52.5 |
300.0 |
| C |
CA |
CB |
HB2 |
177.8 |
60.0 |
| C |
CA |
CB |
HB3 |
287.3 |
179.9 |
| O |
C |
CA |
OXT |
181.5 |
180.0 |
| CA |
C |
OXT |
HXT |
180.0 |
180.0 |
| HA |
CA |
N |
CT |
51.8 |
330.0 |
| HA |
CA |
N |
H |
264.4 |
150.1 |
| N |
CA |
HA |
CB |
118.2 |
119.9 |
| N |
CA |
HA |
C |
236.7 |
239.9 |
| CB |
CA |
HA |
C |
118.5 |
120.0 |
| HA |
CA |
CB |
HB1 |
296.5 |
180.0 |
| HA |
CA |
CB |
HB2 |
61.8 |
300.0 |
| HA |
CA |
CB |
HB3 |
171.3 |
59.9 |
| HA |
CA |
C |
O |
36.2 |
240.0 |
| HA |
CA |
C |
OXT |
214.7 |
60.0 |
| HB1 |
CB |
CA |
C |
52.5 |
300.0 |
| HB1 |
CB |
CA |
HA |
296.5 |
180.0 |
| CA |
CB |
HB1 |
HB2 |
125.2 |
119.9 |
| CA |
CB |
HB1 |
HB3 |
234.8 |
239.9 |
| HB2 |
CB |
HB1 |
HB3 |
109.6 |
120.0 |
| HB2 |
CB |
CA |
C |
177.8 |
60.0 |
| HB2 |
CB |
CA |
HA |
61.8 |
300.0 |
| CA |
CB |
HB2 |
HB1 |
237.3 |
240.0 |
| CA |
CB |
HB2 |
HB3 |
118.6 |
120.0 |
| HB1 |
CB |
HB2 |
HB3 |
241.3 |
240.0 |
| HB3 |
CB |
CA |
C |
287.3 |
179.9 |
| HB3 |
CB |
CA |
HA |
171.3 |
59.9 |
| CA |
CB |
HB3 |
HB1 |
122.7 |
120.0 |
| CA |
CB |
HB3 |
HB2 |
241.4 |
240.0 |
| HB1 |
CB |
HB3 |
HB2 |
118.7 |
120.0 |
| O |
C |
CA |
HA |
36.2 |
240.0 |
| CA |
C |
O |
OXT |
178.4 |
180.0 |
| O |
C |
OXT |
HXT |
358.4 |
0.0 |
| OXT |
C |
CA |
HA |
214.7 |
60.0 |
| CA |
C |
OXT |
O |
181.5 |
180.0 |
| OT |
CT |
N |
H |
97.4 |
180.0 |
| N |
CT |
OT |
CM |
174.3 |
179.9 |
| OT |
CT |
CM |
HM1 |
354.6 |
359.9 |
| OT |
CT |
CM |
HM2 |
119.8 |
120.0 |
| OT |
CT |
CM |
HM3 |
229.3 |
240.0 |
| CM |
CT |
N |
H |
272.0 |
359.9 |
| N |
CT |
CM |
OT |
185.5 |
180.1 |
| HM1 |
CM |
CT |
HM2 |
234.8 |
239.9 |
| HM1 |
CM |
CT |
HM3 |
125.3 |
119.9 |
| HM2 |
CM |
CT |
HM3 |
250.5 |
240.0 |
| CT |
CM |
HM1 |
HM2 |
125.2 |
120.1 |
| CT |
CM |
HM1 |
HM3 |
234.7 |
240.1 |
| HM2 |
CM |
HM1 |
HM3 |
109.5 |
120.0 |
| CT |
CM |
HM2 |
HM1 |
231.0 |
239.9 |
| CT |
CM |
HM2 |
HM3 |
115.5 |
119.9 |
| HM1 |
CM |
HM2 |
HM3 |
244.5 |
240.0 |
| CT |
CM |
HM3 |
HM1 |
129.1 |
120.0 |
| CT |
CM |
HM3 |
HM2 |
244.5 |
240.0 |
| HM1 |
CM |
HM3 |
HM2 |
115.4 |
120.0 |