PDB Chemical Component AXP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AXP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
P1	C2	1.812	1.823
P1	O1P	1.444	1.480
P1	O2P	1.514	1.610
P1	O3P	1.589	1.609
C2	C3	1.505	1.530
C2	O6	1.414	1.426
C2	H2	1.115	1.090
C3	C4	1.564	1.532
C3	H32	1.115	1.090
C3	H31	1.116	1.090
C4	C5	1.525	1.532
C4	O4	1.403	1.428
C4	H4	1.115	1.090
C5	C6	1.524	1.530
C5	N5	1.431	1.464
C5	H5	1.114	1.089
C6	C7	1.545	1.530
C6	O6	1.447	1.428
C6	H6	1.115	1.089
C7	C8	1.545	1.530
C7	O7	1.414	1.429
C7	H7	1.115	1.090
C8	C9	1.524	1.530
C8	O8	1.420	1.428
C8	H8	1.115	1.090
C9	O9	1.411	1.429
C9	H92	1.115	1.091
C9	H91	1.114	1.089
C10	C11	1.524	1.507
C10	N5	1.330	1.348
C10	O10	1.231	1.212
C11	H111	1.114	1.090
C11	H113	1.116	1.089
C11	H112	1.116	1.090
N5	HN5	1.021	0.970
O2P	HOP2	0.950	0.966
O3P	HOP3	0.950	0.966
O4	HO4	0.950	0.967
O7	HO7	0.950	0.967
O8	HO8	0.950	0.967
O9	HO9	0.949	0.967

Bond Angles for AXP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	P1	O1P	114.3	109.5
C2	P1	O2P	109.7	109.5
C2	P1	O3P	99.6	109.5
P1	C2	C3	122.0	109.5
P1	C2	O6	112.3	109.4
P1	C2	H2	99.1	109.4
O1P	P1	O2P	117.1	109.4
O1P	P1	O3P	99.4	109.5
O2P	P1	O3P	115.2	109.5
P1	O2P	HOP2	109.8	106.7
P1	O3P	HOP3	99.6	106.8
C3	C2	O6	115.1	109.8
C3	C2	H2	94.6	109.4
C2	C3	C4	114.7	109.0
C2	C3	H32	110.3	109.5
C2	C3	H31	110.3	109.5
O6	C2	H2	109.9	109.4
C2	O6	C6	122.6	107.7
C4	C3	H32	110.3	109.6
C4	C3	H31	110.3	109.6
C3	C4	C5	110.7	108.7
C3	C4	O4	110.9	109.8
C3	C4	H4	107.4	109.6
H32	C3	H31	99.9	109.6
C5	C4	O4	108.7	109.6
C5	C4	H4	109.7	109.5
C4	C5	C6	109.3	109.1
C4	C5	N5	106.6	109.6
C4	C5	H5	111.9	109.6
O4	C4	H4	109.5	109.6
C4	O4	HO4	110.9	106.8
C6	C5	N5	110.8	109.5
C6	C5	H5	107.8	109.5
C5	C6	C7	116.3	109.4
C5	C6	O6	109.8	109.7
C5	C6	H6	103.5	109.6
N5	C5	H5	110.5	109.6
C5	N5	C10	122.8	120.0
C5	N5	HN5	122.4	120.0
C7	C6	O6	106.3	109.4
C7	C6	H6	107.1	109.4
C6	C7	C8	109.8	109.5
C6	C7	O7	109.5	109.5
C6	C7	H7	109.5	109.5
O6	C6	H6	114.0	109.4
C8	C7	O7	110.3	109.5
C8	C7	H7	108.7	109.5
C7	C8	C9	110.2	109.5
C7	C8	O8	109.7	109.5
C7	C8	H8	108.8	109.5
O7	C7	H7	109.0	109.4
C7	O7	HO7	109.5	106.8
C9	C8	O8	109.6	109.4
C9	C8	H8	109.1	109.4
C8	C9	O9	108.7	109.5
C8	C9	H92	112.5	109.5
C8	C9	H91	112.4	109.5
O8	C8	H8	109.5	109.5
C8	O8	HO8	109.8	106.8
O9	C9	H92	112.5	109.4
O9	C9	H91	112.5	109.5
C9	O9	HO9	108.7	106.8
H92	C9	H91	98.0	109.5
C11	C10	N5	115.9	120.0
C11	C10	O10	121.3	120.0
C10	C11	H111	115.9	109.5
C10	C11	H113	109.9	109.5
C10	C11	H112	109.9	109.5
N5	C10	O10	122.8	120.0
C10	N5	HN5	114.8	120.0
H111	C11	H113	109.9	109.5
H111	C11	H112	109.9	109.5
H113	C11	H112	100.3	109.4

Torsion Angles for AXP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O1P	P1	C2	O2P	226.2	119.9
O1P	P1	C2	O3P	104.9	240.0
O2P	P1	C2	O3P	238.7	120.1
C2	P1	O2P	HOP2	180.0	300.0
C2	P1	O3P	HOP3	180.1	180.0
C3	C2	P1	O6	217.3	239.7
C3	C2	P1	H2	101.3	119.9
P1	C2	C3	C4	174.2	181.3
P1	C2	C3	H32	299.6	61.4
P1	C2	C3	H31	49.0	301.2
O6	C2	P1	H2	244.0	240.2
P1	C2	O6	C6	181.0	172.3
C2	P1	O1P	O2P	130.3	240.0
C2	P1	O1P	O3P	254.9	120.0
O1P	P1	C2	C3	230.6	60.0
O1P	P1	C2	O6	13.3	180.3
O1P	P1	C2	H2	129.3	300.1
O2P	P1	O1P	O3P	124.7	240.0
O1P	P1	O2P	HOP2	312.4	180.0
O1P	P1	O3P	HOP3	63.2	300.0
C2	P1	O2P	O1P	227.6	120.0
C2	P1	O2P	O3P	111.3	239.9
O2P	P1	C2	C3	4.4	300.0
O2P	P1	C2	O6	147.1	60.3
O2P	P1	C2	H2	263.1	180.2
O1P	P1	O2P	O3P	243.8	120.0
O2P	P1	O3P	HOP3	297.3	59.9
C2	P1	O3P	O1P	116.8	240.0
C2	P1	O3P	O2P	242.8	120.1
O3P	P1	C2	C3	125.6	180.0
O3P	P1	C2	O6	268.4	300.3
O3P	P1	C2	H2	24.4	60.1
O1P	P1	O3P	O2P	126.0	240.1
O3P	P1	O2P	HOP2	68.6	60.1
C3	C2	P1	O1P	230.6	60.0
C3	C2	P1	O2P	4.4	300.0
C3	C2	P1	O3P	125.6	180.0
P1	C2	C3	O6	141.8	120.1
P1	C2	C3	H2	256.3	240.1
O6	C2	C3	H2	114.5	120.0
C3	C2	O6	C6	326.5	292.5
C4	C3	C2	H32	234.7	119.9
C4	C3	C2	H31	125.3	240.1
C2	C3	C4	C5	11.9	306.3
C2	C3	C4	O4	132.6	66.1
C2	C3	C4	H4	252.2	186.6
H32	C3	C2	H31	250.6	120.2
O6	C2	P1	O1P	13.3	180.3
O6	C2	P1	O2P	147.1	60.3
O6	C2	P1	O3P	268.4	300.3
P1	C2	O6	C3	214.6	239.9
P1	C2	O6	H2	109.3	119.8
C3	C2	O6	H2	254.7	240.0
O6	C2	C3	C4	32.5	61.2
O6	C2	C3	H32	157.8	301.3
O6	C2	C3	H31	267.2	181.1
C5	C6	O6	C2	347.6	67.5
C7	C6	O6	C2	220.9	307.5
C2	O6	C6	H6	103.1	187.8
H2	C2	P1	O1P	129.3	300.1
H2	C2	P1	O2P	263.1	180.2
H2	C2	P1	O3P	24.4	60.1
P1	C2	H2	C3	123.4	119.9
P1	C2	H2	O6	242.2	240.2
C3	C2	H2	O6	118.8	120.3
H2	C2	C3	C4	277.9	301.2
H2	C2	C3	H32	43.2	181.3
H2	C2	C3	H31	152.6	61.1
H2	C2	O6	C6	71.8	52.5
C4	C3	C2	O6	32.5	61.2
C4	C3	C2	H2	277.9	301.2
C2	C3	C4	H32	125.3	240.1
C2	C3	C4	H31	234.7	119.9
H32	C3	C4	H31	109.4	239.8
C5	C4	C3	O4	239.3	240.1
C5	C4	C3	H4	119.7	119.7
C3	C4	C5	C6	303.1	53.8
C3	C4	C5	N5	183.3	293.9
C3	C4	C5	H5	62.4	173.6
O4	C4	C3	H4	240.4	239.6
C3	C4	O4	HO4	180.0	60.7
H32	C3	C2	O6	157.8	301.3
H32	C3	C2	H2	43.2	181.3
C2	C3	H32	C4	232.2	119.6
C2	C3	H32	H31	116.1	239.8
C4	C3	H32	H31	243.9	120.2
H32	C3	C4	C5	246.6	66.1
H32	C3	C4	O4	7.3	186.0
H32	C3	C4	H4	126.9	306.4
H31	C3	C2	O6	267.2	181.1
H31	C3	C2	H2	152.6	61.1
C2	C3	H31	C4	127.8	240.4
C2	C3	H31	H32	243.9	120.2
C4	C3	H31	H32	116.1	239.8
H31	C3	C4	C5	137.2	186.4
H31	C3	C4	O4	257.9	306.3
H31	C3	C4	H4	17.5	66.7
C5	C4	C3	H32	246.6	66.1
C5	C4	C3	H31	137.2	186.4
C3	C4	C5	O4	122.0	120.0
C3	C4	C5	H4	241.7	240.3
O4	C4	C5	H4	119.7	120.3
C5	C4	O4	HO4	301.9	180.1
C6	C5	C4	N5	119.8	119.9
C6	C5	C4	H5	240.7	240.1
C4	C5	C6	C7	178.8	58.8
C4	C5	C6	O6	58.0	298.8
C4	C5	C6	H6	296.0	178.7
N5	C5	C4	H5	120.9	120.3
C4	C5	N5	C10	205.6	269.8
C4	C5	N5	HN5	25.6	89.8
O4	C4	C3	H32	7.3	186.0
O4	C4	C3	H31	257.9	306.3
C3	C4	O4	C5	238.1	240.7
C3	C4	O4	H4	118.3	120.4
C5	C4	O4	H4	240.2	239.7
O4	C4	C5	C6	181.1	293.8
O4	C4	C5	N5	61.3	173.9
O4	C4	C5	H5	300.4	53.7
H4	C4	C3	H32	126.9	306.4
H4	C4	C3	H31	17.5	66.7
C3	C4	H4	C5	120.4	119.2
C3	C4	H4	O4	239.6	239.5
C5	C4	H4	O4	119.2	120.3
H4	C4	C5	C6	61.4	173.5
H4	C4	C5	N5	301.6	53.6
H4	C4	C5	H5	180.7	293.3
H4	C4	O4	HO4	61.7	300.3
C2	O6	C6	C5	347.6	67.5
C6	C5	C4	O4	181.1	293.8
C6	C5	C4	H4	61.4	173.5
C4	C5	C6	N5	242.8	240.1
C4	C5	C6	H5	121.8	119.9
N5	C5	C6	H5	239.0	239.8
C6	C5	N5	C10	86.7	150.2
C6	C5	N5	HN5	266.8	330.2
C7	C6	C5	O6	120.8	120.0
C7	C6	C5	H6	242.9	240.1
C5	C6	C7	C8	190.3	67.3
C5	C6	C7	O7	311.6	187.3
C5	C6	C7	H7	71.1	307.3
O6	C6	C5	H6	122.1	120.2
N5	C5	C4	O4	61.3	173.9
N5	C5	C4	H4	301.6	53.6
C4	C5	N5	C6	118.9	119.6
C4	C5	N5	H5	238.3	239.7
C6	C5	N5	H5	119.4	120.1
N5	C5	C6	C7	296.0	178.7
N5	C5	C6	O6	175.2	58.7
N5	C5	C6	H6	53.1	298.6
C11	C10	N5	C5	180.0	180.0
C5	N5	C10	O10	359.6	359.9
C10	N5	C5	HN5	180.0	180.0
H5	C5	C4	O4	300.4	53.7
H5	C5	C4	H4	180.7	293.3
C4	C5	H5	C6	239.8	240.4
C4	C5	H5	N5	118.6	120.3
C6	C5	H5	N5	238.8	239.9
H5	C5	C6	C7	57.0	298.9
H5	C5	C6	O6	296.2	178.9
H5	C5	C6	H6	174.1	58.7
H5	C5	N5	C10	327.3	30.1
H5	C5	N5	HN5	147.4	210.1
C2	O6	C6	C7	220.9	307.5
C7	C6	C5	N5	296.0	178.7
C7	C6	C5	H5	57.0	298.9
C5	C6	C7	O6	237.4	239.8
C5	C6	C7	H6	115.1	120.0
O6	C6	C7	H6	237.7	240.2
C8	C7	C6	O7	238.7	240.0
C8	C7	C6	H7	119.3	120.0
C6	C7	C8	C9	182.1	173.4
C6	C7	C8	O8	302.8	293.4
C6	C7	C8	H8	62.6	53.5
O7	C7	C6	H7	240.5	240.0
C6	C7	O7	HO7	180.0	305.0
C6	O6	C2	H2	71.8	52.5
O6	C6	C5	N5	175.2	58.7
O6	C6	C5	H5	296.2	178.9
C5	C6	O6	C7	126.7	119.9
C5	C6	O6	H6	244.4	239.7
C7	C6	O6	H6	117.8	119.8
O6	C6	C7	C8	312.9	187.4
O6	C6	C7	O7	74.2	307.4
O6	C6	C7	H7	193.7	67.4
H6	C6	C5	N5	53.1	298.6
H6	C6	C5	H5	174.1	58.7
C5	C6	H6	C7	236.5	240.1
C5	C6	H6	O6	119.2	120.4
C7	C6	H6	O6	242.6	240.2
H6	C6	C7	C8	75.2	307.2
H6	C6	C7	O7	196.5	67.2
H6	C6	C7	H7	316.0	187.3
C8	C7	C6	O6	312.9	187.4
C8	C7	C6	H6	75.2	307.2
C6	C7	C8	O7	120.7	120.0
C6	C7	C8	H7	240.2	240.0
O7	C7	C8	H7	119.5	120.0
C8	C7	O7	HO7	300.9	65.0
C9	C8	C7	O8	239.3	240.0
C9	C8	C7	H8	119.5	119.9
C7	C8	C9	O9	67.9	180.1
C7	C8	C9	H92	193.1	300.0
C7	C8	C9	H91	302.6	60.0
O8	C8	C7	H8	240.3	240.0
C7	C8	O8	HO8	180.0	290.8
O7	C7	C6	O6	74.2	307.4
O7	C7	C6	H6	196.5	67.2
C6	C7	O7	C8	239.1	240.0
C6	C7	O7	H7	119.8	120.0
C8	C7	O7	H7	240.7	240.0
O7	C7	C8	C9	61.3	53.4
O7	C7	C8	O8	182.1	173.4
O7	C7	C8	H8	301.8	293.5
H7	C7	C6	O6	193.7	67.4
H7	C7	C6	H6	316.0	187.3
C6	C7	H7	C8	119.9	120.0
C6	C7	H7	O7	240.2	239.9
C8	C7	H7	O7	120.3	120.0
H7	C7	C8	C9	301.9	293.4
H7	C7	C8	O8	62.6	53.5
H7	C7	C8	H8	182.3	173.5
H7	C7	O7	HO7	60.2	184.9
C9	C8	C7	O7	61.3	53.4
C9	C8	C7	H7	301.9	293.4
C7	C8	C9	O8	120.8	120.1
C7	C8	C9	H8	240.6	240.0
O8	C8	C9	H8	119.8	119.9
C9	C8	O8	HO8	301.1	50.8
O9	C9	C8	H92	234.8	240.1
O9	C9	C8	H91	125.3	120.1
C8	C9	O9	HO9	180.0	180.0
H92	C9	C8	H91	250.5	240.0
O8	C8	C7	O7	182.1	173.4
O8	C8	C7	H7	62.6	53.5
C7	C8	O8	C9	238.9	240.0
C7	C8	O8	H8	119.4	120.1
C9	C8	O8	H8	240.5	240.1
O8	C8	C9	O9	307.1	60.0
O8	C8	C9	H92	72.3	180.0
O8	C8	C9	H91	181.8	299.9
H8	C8	C7	O7	301.8	293.5
H8	C8	C7	H7	182.3	173.5
C7	C8	H8	C9	120.2	120.0
C7	C8	H8	O8	240.1	239.9
C9	C8	H8	O8	119.9	119.9
H8	C8	C9	O9	187.3	300.1
H8	C8	C9	H92	312.5	60.0
H8	C8	C9	H91	62.0	180.0
H8	C8	O8	HO8	60.6	170.8
O9	C9	C8	O8	307.1	60.0
O9	C9	C8	H8	187.3	300.1
C8	C9	O9	H92	125.2	120.0
C8	C9	O9	H91	234.8	240.0
H92	C9	O9	H91	109.5	120.0
H92	C9	C8	O8	72.3	180.0
H92	C9	C8	H8	312.5	60.0
C8	C9	H92	O9	236.9	240.0
C8	C9	H92	H91	118.4	120.0
O9	C9	H92	H91	241.5	240.0
H92	C9	O9	HO9	54.8	60.0
H91	C9	C8	O8	181.8	299.9
H91	C9	C8	H8	62.0	180.0
C8	C9	H91	O9	123.1	120.1
C8	C9	H91	H92	241.6	240.0
O9	C9	H91	H92	118.5	119.9
H91	C9	O9	HO9	305.2	300.0
C5	N5	C10	C11	180.0	180.0
N5	C10	C11	O10	179.5	179.9
C11	C10	N5	HN5	0.0	359.9
H111	C11	C10	H113	234.7	240.0
H111	C11	C10	H112	125.3	120.0
H113	C11	C10	H112	250.6	240.0
C10	N5	C5	H5	327.3	30.1
C5	N5	C10	HN5	180.0	180.0
C11	C10	N5	O10	180.5	180.1
N5	C10	C11	H111	180.0	180.0
N5	C10	C11	H113	305.3	300.0
N5	C10	C11	H112	54.7	60.0
C11	C10	O10	N5	179.5	179.9
O10	C10	C11	H111	0.5	0.0
O10	C10	C11	H113	125.7	120.1
O10	C10	C11	H112	235.2	240.0
O10	C10	N5	HN5	179.5	179.9
H111	C11	C10	N5	180.0	180.0
H111	C11	C10	O10	0.5	0.0
C10	C11	H111	H113	125.2	120.0
C10	C11	H111	H112	234.7	240.0
H113	C11	H111	H112	109.5	120.0
H113	C11	C10	N5	305.3	300.0
H113	C11	C10	O10	125.7	120.1
C10	C11	H113	H111	231.4	240.0
C10	C11	H113	H112	115.6	120.0
H111	C11	H113	H112	244.3	240.0
H112	C11	C10	N5	54.7	60.0
H112	C11	C10	O10	235.2	240.0
C10	C11	H112	H111	128.7	120.0
C10	C11	H112	H113	244.4	240.0
H111	C11	H112	H113	115.7	120.0
HN5	N5	C5	H5	147.4	210.1
C5	N5	HN5	C10	180.0	180.0
HN5	N5	C10	O10	179.5	179.9
HOP2	O2P	P1	O3P	68.6	60.1
HO4	O4	C4	H4	61.7	300.3
HO7	O7	C7	H7	60.2	184.9
HO8	O8	C8	H8	60.6	170.8
HO9	O9	C9	H92	54.8	60.0
HO9	O9	C9	H91	305.2	300.0