PDB Chemical Component AXM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AXM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C10 |
C7 |
1.526 |
1.530 |
| C10 |
C3 |
1.525 |
1.529 |
| C7 |
C8 |
1.526 |
1.530 |
| C7 |
C6 |
1.524 |
1.530 |
| C8 |
C1 |
1.524 |
1.530 |
| C6 |
C5 |
1.522 |
1.530 |
| C3 |
C2 |
1.525 |
1.530 |
| C3 |
C4 |
1.524 |
1.530 |
| C2 |
C1 |
1.526 |
1.531 |
| C1 |
C9 |
1.527 |
1.530 |
| C4 |
C5 |
1.525 |
1.529 |
| C5 |
C9 |
1.523 |
1.530 |
| C5 |
C26 |
1.527 |
1.530 |
| O28 |
C27 |
1.221 |
1.213 |
| C26 |
C27 |
1.512 |
1.507 |
| C27 |
N29 |
1.329 |
1.348 |
| N29 |
O30 |
1.393 |
1.416 |
| N29 |
H1 |
1.000 |
0.970 |
| O30 |
H2 |
0.950 |
0.967 |
| C26 |
H3 |
1.100 |
1.090 |
| C26 |
H4 |
1.100 |
1.091 |
| C4 |
H5 |
1.100 |
1.090 |
| C4 |
H6 |
1.100 |
1.090 |
| C3 |
H7 |
1.100 |
1.090 |
| C9 |
H8 |
1.100 |
1.090 |
| C9 |
H9 |
1.100 |
1.090 |
| C1 |
H10 |
1.100 |
1.090 |
| C8 |
H11 |
1.101 |
1.089 |
| C8 |
H12 |
1.100 |
1.091 |
| C2 |
H13 |
1.100 |
1.089 |
| C2 |
H14 |
1.101 |
1.090 |
| C6 |
H15 |
1.100 |
1.090 |
| C6 |
H16 |
1.100 |
1.090 |
| C7 |
H17 |
1.100 |
1.090 |
| C10 |
H18 |
1.100 |
1.090 |
| C10 |
H19 |
1.100 |
1.091 |
Bond Angles for AXM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C10 |
C7 |
H17 |
109.9 |
109.5 |
| C10 |
C3 |
H7 |
109.9 |
109.5 |
| C7 |
C8 |
H11 |
109.3 |
109.5 |
| C7 |
C8 |
H12 |
109.3 |
109.5 |
| C7 |
C6 |
H15 |
109.4 |
109.5 |
| C7 |
C6 |
H16 |
109.4 |
109.5 |
| C8 |
C1 |
H10 |
109.9 |
109.5 |
| C3 |
C2 |
C1 |
110.2 |
109.5 |
| C2 |
C3 |
H7 |
109.9 |
109.4 |
| C3 |
C2 |
H13 |
109.3 |
109.5 |
| C3 |
C2 |
H14 |
109.3 |
109.4 |
| C3 |
C4 |
H5 |
109.4 |
109.5 |
| C3 |
C4 |
H6 |
109.4 |
109.4 |
| C2 |
C1 |
H10 |
109.9 |
109.5 |
| C1 |
C9 |
H8 |
109.4 |
109.5 |
| C1 |
C9 |
H9 |
109.4 |
109.5 |
| C4 |
C5 |
C9 |
109.0 |
109.5 |
| C5 |
C9 |
H8 |
109.4 |
109.4 |
| C5 |
C9 |
H9 |
109.4 |
109.5 |
| C5 |
C26 |
H3 |
109.1 |
109.5 |
| C5 |
C26 |
H4 |
109.1 |
109.5 |
| O28 |
C27 |
N29 |
122.5 |
120.0 |
| C27 |
N29 |
O30 |
119.5 |
120.0 |
| C27 |
N29 |
H1 |
120.2 |
119.9 |
| O30 |
N29 |
H1 |
120.2 |
120.1 |
| N29 |
O30 |
H2 |
109.5 |
114.0 |
| H3 |
C26 |
H4 |
109.4 |
109.5 |
| H5 |
C4 |
H6 |
109.5 |
109.5 |
| H8 |
C9 |
H9 |
109.5 |
109.5 |
| H11 |
C8 |
H12 |
109.5 |
109.5 |
| H13 |
C2 |
H14 |
109.4 |
109.5 |
| H15 |
C6 |
H16 |
109.5 |
109.5 |
| H18 |
C10 |
H19 |
109.5 |
109.5 |
Torsion Angles for AXM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C7 |
C10 |
C3 |
H7 |
179.2 |
180.0 |
| C10 |
C7 |
C8 |
H11 |
179.6 |
300.0 |
| C10 |
C7 |
C8 |
H12 |
299.4 |
180.0 |
| C10 |
C7 |
C6 |
H15 |
61.4 |
180.0 |
| C10 |
C7 |
C6 |
H16 |
181.3 |
60.0 |
| C2 |
C3 |
C10 |
H7 |
239.4 |
240.0 |
| C10 |
C3 |
C2 |
H13 |
60.6 |
60.0 |
| C10 |
C3 |
C2 |
H14 |
180.4 |
180.0 |
| C10 |
C3 |
C4 |
H5 |
179.2 |
300.0 |
| C10 |
C3 |
C4 |
H6 |
299.1 |
180.0 |
| C7 |
C8 |
C1 |
H10 |
179.6 |
180.0 |
| H11 |
C8 |
C7 |
H12 |
240.2 |
120.0 |
| C6 |
C7 |
C8 |
H11 |
60.6 |
180.0 |
| C6 |
C7 |
C8 |
H12 |
180.4 |
60.0 |
| H15 |
C6 |
C7 |
H16 |
240.1 |
120.0 |
| C3 |
C2 |
C1 |
C8 |
60.3 |
60.0 |
| C2 |
C1 |
C8 |
H10 |
120.3 |
120.0 |
| C8 |
C1 |
C9 |
H8 |
60.7 |
180.1 |
| C8 |
C1 |
C9 |
H9 |
180.6 |
60.1 |
| C6 |
C5 |
C9 |
H8 |
300.2 |
180.0 |
| C6 |
C5 |
C9 |
H9 |
180.3 |
300.0 |
| C6 |
C5 |
C26 |
H3 |
30.8 |
180.0 |
| C6 |
C5 |
C26 |
H4 |
150.3 |
60.0 |
| C10 |
C3 |
C2 |
H7 |
120.6 |
120.0 |
| C2 |
C3 |
C4 |
H5 |
60.0 |
180.0 |
| C2 |
C3 |
C4 |
H6 |
179.9 |
60.0 |
| C3 |
C2 |
C1 |
H10 |
180.5 |
180.0 |
| H13 |
C2 |
C3 |
H14 |
240.3 |
240.0 |
| C3 |
C4 |
C5 |
C9 |
60.6 |
60.0 |
| H5 |
C4 |
C3 |
H6 |
240.1 |
120.0 |
| C8 |
C1 |
C2 |
H10 |
239.7 |
240.0 |
| C1 |
C2 |
C3 |
H7 |
179.9 |
180.0 |
| C3 |
C2 |
C1 |
H13 |
120.1 |
120.0 |
| C3 |
C2 |
C1 |
H14 |
239.9 |
240.0 |
| C2 |
C1 |
C9 |
H8 |
179.6 |
300.0 |
| C2 |
C1 |
C9 |
H9 |
299.4 |
180.0 |
| C3 |
C2 |
C1 |
C9 |
301.0 |
300.0 |
| C5 |
C9 |
C1 |
H8 |
239.9 |
119.9 |
| C5 |
C9 |
C1 |
H9 |
120.1 |
239.9 |
| H8 |
C9 |
C1 |
H9 |
240.2 |
120.0 |
| C4 |
C5 |
C9 |
H8 |
179.6 |
60.0 |
| C4 |
C5 |
C9 |
H9 |
59.7 |
180.0 |
| C4 |
C5 |
C26 |
H3 |
152.4 |
300.0 |
| C4 |
C5 |
C26 |
H4 |
271.9 |
180.0 |
| C1 |
C9 |
C5 |
H8 |
120.1 |
240.0 |
| C1 |
C9 |
C5 |
H9 |
239.9 |
120.1 |
| C9 |
C5 |
C26 |
H3 |
272.3 |
60.0 |
| C9 |
C5 |
C26 |
H4 |
31.8 |
300.0 |
| H8 |
C9 |
C5 |
H9 |
119.8 |
240.0 |
| H3 |
C26 |
C5 |
H4 |
240.5 |
120.0 |
| O28 |
C27 |
N29 |
O30 |
11.0 |
0.0 |
| O28 |
C27 |
N29 |
H1 |
191.0 |
180.0 |
| C26 |
C27 |
N29 |
H1 |
11.2 |
0.2 |
| O30 |
N29 |
C27 |
H1 |
180.0 |
180.1 |
| C27 |
N29 |
O30 |
H2 |
355.0 |
180.0 |
| C27 |
N29 |
O30 |
H1 |
180.0 |
179.9 |
| C27 |
N29 |
H1 |
O30 |
180.0 |
180.1 |
| H1 |
N29 |
O30 |
H2 |
175.0 |
0.0 |
| H2 |
O30 |
N29 |
H1 |
175.0 |
0.0 |
| C5 |
C26 |
H3 |
H4 |
119.3 |
240.0 |
| C5 |
C26 |
H4 |
H3 |
240.7 |
120.0 |
| C3 |
C4 |
H5 |
H6 |
119.9 |
240.1 |
| H5 |
C4 |
C5 |
C9 |
300.6 |
180.0 |
| C3 |
C4 |
H6 |
H5 |
240.1 |
120.0 |
| H6 |
C4 |
C5 |
C9 |
180.7 |
300.0 |
| H7 |
C3 |
C2 |
C1 |
179.9 |
180.0 |
| H7 |
C3 |
C2 |
H13 |
300.0 |
300.0 |
| H7 |
C3 |
C2 |
H14 |
59.7 |
60.0 |
| H7 |
C3 |
C4 |
H5 |
299.5 |
60.0 |
| H7 |
C3 |
C4 |
H6 |
59.4 |
300.1 |
| C1 |
C9 |
H8 |
H9 |
119.8 |
240.0 |
| C5 |
C9 |
H8 |
H9 |
240.2 |
120.0 |
| C1 |
C9 |
H9 |
H8 |
240.2 |
120.0 |
| C5 |
C9 |
H9 |
H8 |
119.8 |
240.1 |
| H10 |
C1 |
C9 |
H8 |
300.1 |
60.0 |
| H10 |
C1 |
C9 |
H9 |
60.0 |
300.0 |
| C7 |
C8 |
H11 |
H12 |
119.7 |
240.0 |
| H11 |
C8 |
C1 |
H10 |
59.4 |
300.1 |
| C7 |
C8 |
H12 |
H11 |
240.3 |
120.0 |
| H12 |
C8 |
C1 |
H10 |
299.7 |
60.0 |
| C3 |
C2 |
H13 |
C1 |
239.3 |
240.0 |
| H13 |
C2 |
C3 |
H7 |
300.0 |
300.0 |
| C3 |
C2 |
H13 |
H14 |
119.7 |
120.0 |
| H13 |
C2 |
C1 |
H10 |
60.4 |
60.0 |
| C3 |
C2 |
H14 |
C1 |
120.7 |
120.0 |
| H14 |
C2 |
C3 |
H7 |
59.7 |
60.0 |
| C3 |
C2 |
H14 |
H13 |
240.4 |
240.0 |
| H14 |
C2 |
C1 |
H10 |
300.6 |
300.0 |
| C7 |
C6 |
H15 |
H16 |
119.9 |
240.0 |
| C7 |
C6 |
H16 |
H15 |
240.2 |
120.1 |
| H17 |
C7 |
C8 |
H11 |
300.3 |
60.0 |
| H17 |
C7 |
C8 |
H12 |
60.1 |
300.0 |
| H17 |
C7 |
C6 |
H15 |
300.9 |
60.0 |
| H17 |
C7 |
C6 |
H16 |
60.8 |
299.9 |
| H18 |
C10 |
C7 |
H17 |
300.9 |
60.0 |
| H18 |
C10 |
C3 |
H7 |
59.0 |
300.0 |
| H19 |
C10 |
C7 |
H17 |
60.6 |
300.0 |
| H19 |
C10 |
C3 |
H7 |
299.3 |
60.0 |