PDB Chemical Component AVL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AVL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAQ |
CAO |
1.555 |
1.530 |
| OAE |
CAD |
1.231 |
1.215 |
| CAC |
CAB |
1.536 |
1.530 |
| CAO |
CAP |
1.574 |
1.529 |
| CAO |
CAN |
1.484 |
1.507 |
| CAD |
CAF |
1.482 |
1.412 |
| CAD |
CAB |
1.500 |
1.507 |
| CAN |
CAF |
1.463 |
1.409 |
| CAN |
NAM |
1.390 |
1.306 |
| CAF |
CAG |
1.398 |
1.413 |
| NAM |
NAL |
1.396 |
1.400 |
| CAB |
CAA |
1.555 |
1.529 |
| CAG |
NAL |
1.439 |
1.364 |
| CAG |
CAH |
1.411 |
1.399 |
| NAL |
CAK |
1.393 |
1.362 |
| CAH |
CAI |
1.347 |
1.366 |
| CAK |
CAJ |
1.354 |
1.352 |
| CAI |
CAJ |
1.420 |
1.401 |
| CAA |
H1 |
1.100 |
1.090 |
| CAA |
H2 |
1.100 |
1.090 |
| CAA |
H3 |
1.100 |
1.090 |
| CAB |
H4 |
1.100 |
1.090 |
| CAC |
H5 |
1.100 |
1.090 |
| CAC |
H6 |
1.100 |
1.090 |
| CAC |
H7 |
1.100 |
1.089 |
| CAH |
H8 |
1.080 |
1.080 |
| CAI |
H9 |
1.081 |
1.079 |
| CAJ |
H10 |
1.080 |
1.081 |
| CAK |
H11 |
1.080 |
1.080 |
| CAO |
H12 |
1.100 |
1.090 |
| CAQ |
H13 |
1.100 |
1.090 |
| CAQ |
H14 |
1.100 |
1.090 |
| CAQ |
H15 |
1.100 |
1.090 |
| CAP |
H16 |
1.100 |
1.090 |
| CAP |
H17 |
1.100 |
1.090 |
| CAP |
H18 |
1.100 |
1.091 |
Bond Angles for AVL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAQ |
CAO |
CAP |
108.7 |
109.5 |
| CAQ |
CAO |
H12 |
108.9 |
109.5 |
| OAE |
CAD |
CAF |
117.6 |
120.0 |
| CAC |
CAB |
H4 |
110.5 |
109.4 |
| CAP |
CAO |
H12 |
108.6 |
109.5 |
| CAO |
CAP |
H16 |
109.5 |
109.5 |
| CAO |
CAP |
H17 |
109.4 |
109.5 |
| CAO |
CAP |
H18 |
109.5 |
109.5 |
| CAD |
CAF |
CAG |
123.3 |
126.7 |
| CAD |
CAB |
H4 |
111.0 |
109.5 |
| CAF |
CAG |
NAL |
106.4 |
106.9 |
| CAF |
CAG |
CAH |
135.5 |
132.8 |
| CAB |
CAA |
H1 |
109.5 |
109.5 |
| CAB |
CAA |
H2 |
109.5 |
109.5 |
| CAB |
CAA |
H3 |
109.5 |
109.5 |
| CAH |
CAG |
NAL |
118.1 |
120.3 |
| CAG |
NAL |
CAK |
122.7 |
120.0 |
| CAG |
CAH |
CAI |
118.2 |
119.2 |
| CAG |
CAH |
H8 |
120.9 |
120.4 |
| NAL |
CAK |
H11 |
121.6 |
119.6 |
| CAH |
CAI |
CAJ |
122.6 |
119.3 |
| CAI |
CAH |
H8 |
120.9 |
120.3 |
| CAH |
CAI |
H9 |
118.7 |
120.3 |
| CAK |
CAJ |
H10 |
119.2 |
119.9 |
| CAJ |
CAI |
H9 |
118.7 |
120.3 |
| CAI |
CAJ |
H10 |
119.2 |
119.8 |
| H1 |
CAA |
H2 |
109.5 |
109.4 |
| H1 |
CAA |
H3 |
109.5 |
109.5 |
| H2 |
CAA |
H3 |
109.5 |
109.4 |
| H5 |
CAC |
H6 |
109.4 |
109.4 |
| H5 |
CAC |
H7 |
109.5 |
109.5 |
| H6 |
CAC |
H7 |
109.4 |
109.5 |
| H13 |
CAQ |
H14 |
109.5 |
109.5 |
| H13 |
CAQ |
H15 |
109.5 |
109.4 |
| H14 |
CAQ |
H15 |
109.4 |
109.5 |
| H16 |
CAP |
H17 |
109.5 |
109.4 |
| H16 |
CAP |
H18 |
109.5 |
109.5 |
| H17 |
CAP |
H18 |
109.5 |
109.4 |
Torsion Angles for AVL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAP |
CAO |
CAQ |
H12 |
241.8 |
120.0 |
| CAQ |
CAO |
CAP |
H16 |
180.0 |
180.0 |
| CAQ |
CAO |
CAP |
H17 |
300.0 |
300.0 |
| CAQ |
CAO |
CAP |
H18 |
60.0 |
59.9 |
| OAE |
CAD |
CAF |
CAG |
310.5 |
84.5 |
| OAE |
CAD |
CAB |
H4 |
166.1 |
146.8 |
| CAD |
CAB |
CAC |
H4 |
237.1 |
120.0 |
| CAC |
CAB |
CAA |
H1 |
180.0 |
60.0 |
| CAC |
CAB |
CAA |
H2 |
300.0 |
180.0 |
| CAC |
CAB |
CAA |
H3 |
60.0 |
300.0 |
| CAQ |
CAO |
CAP |
H12 |
118.3 |
240.0 |
| H16 |
CAP |
CAO |
H17 |
240.0 |
240.0 |
| H16 |
CAP |
CAO |
H18 |
120.0 |
120.1 |
| H17 |
CAP |
CAO |
H18 |
240.0 |
240.1 |
| CAF |
CAD |
CAB |
H4 |
347.5 |
326.7 |
| CAD |
CAF |
CAG |
NAL |
177.8 |
180.0 |
| CAD |
CAF |
CAG |
CAH |
358.7 |
359.9 |
| CAC |
CAB |
CAD |
H4 |
122.6 |
240.1 |
| CAD |
CAB |
CAA |
H1 |
61.7 |
180.0 |
| CAD |
CAB |
CAA |
H2 |
181.7 |
300.0 |
| CAD |
CAB |
CAA |
H3 |
301.7 |
60.0 |
| CAH |
CAG |
CAF |
NAL |
180.9 |
180.0 |
| CAF |
CAG |
NAL |
CAK |
179.8 |
179.9 |
| CAF |
CAG |
CAH |
CAI |
180.1 |
180.0 |
| CAF |
CAG |
CAH |
H8 |
0.1 |
0.0 |
| NAM |
NAL |
CAK |
H11 |
0.0 |
360.0 |
| H1 |
CAA |
CAB |
H2 |
240.0 |
240.0 |
| H1 |
CAA |
CAB |
H3 |
120.0 |
120.0 |
| H2 |
CAA |
CAB |
H3 |
240.0 |
240.0 |
| CAF |
CAG |
NAL |
CAH |
180.7 |
180.0 |
| NAL |
CAG |
CAH |
CAI |
1.0 |
360.0 |
| NAL |
CAG |
CAH |
H8 |
181.0 |
180.0 |
| CAG |
NAL |
CAK |
H11 |
180.3 |
180.1 |
| CAF |
CAG |
CAH |
NAL |
179.1 |
180.0 |
| CAH |
CAG |
NAL |
CAK |
359.1 |
360.0 |
| CAG |
CAH |
CAI |
CAJ |
359.4 |
0.0 |
| CAI |
CAH |
CAG |
H8 |
180.0 |
180.0 |
| CAG |
CAH |
CAI |
H9 |
179.4 |
180.0 |
| NAL |
CAK |
CAJ |
H10 |
180.2 |
180.0 |
| CAI |
CAH |
CAG |
NAL |
1.0 |
360.0 |
| CAG |
CAH |
CAI |
H8 |
180.0 |
180.0 |
| CAJ |
CAI |
CAH |
H9 |
180.0 |
180.0 |
| CAH |
CAI |
CAJ |
H10 |
180.0 |
180.0 |
| CAG |
NAL |
CAK |
CAJ |
0.3 |
0.1 |
| CAK |
CAJ |
CAI |
H9 |
180.0 |
180.0 |
| CAI |
CAJ |
CAK |
H10 |
180.0 |
180.0 |
| CAJ |
CAI |
CAH |
H8 |
179.4 |
180.0 |
| CAH |
CAI |
CAJ |
H9 |
180.0 |
180.0 |
| CAK |
CAJ |
CAI |
H10 |
180.0 |
180.0 |
| CAB |
CAA |
H1 |
H2 |
120.0 |
120.0 |
| CAB |
CAA |
H1 |
H3 |
240.0 |
239.9 |
| H2 |
CAA |
H1 |
H3 |
120.0 |
119.9 |
| CAB |
CAA |
H2 |
H1 |
240.0 |
240.0 |
| CAB |
CAA |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
CAA |
H2 |
H3 |
240.0 |
240.0 |
| CAB |
CAA |
H3 |
H1 |
120.0 |
120.0 |
| CAB |
CAA |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
CAA |
H3 |
H2 |
120.0 |
119.9 |
| H4 |
CAB |
CAA |
H1 |
300.5 |
300.0 |
| H4 |
CAB |
CAA |
H2 |
60.6 |
60.0 |
| H4 |
CAB |
CAA |
H3 |
180.6 |
180.0 |
| H5 |
CAC |
CAB |
H4 |
302.9 |
180.1 |
| H6 |
CAC |
H5 |
H7 |
119.9 |
120.0 |
| H6 |
CAC |
CAB |
H4 |
62.9 |
300.0 |
| H5 |
CAC |
H6 |
H7 |
240.0 |
240.0 |
| H7 |
CAC |
CAB |
H4 |
182.9 |
60.0 |
| H5 |
CAC |
H7 |
H6 |
119.9 |
119.9 |
| H8 |
CAH |
CAG |
NAL |
181.0 |
180.0 |
| CAG |
CAH |
H8 |
CAI |
180.0 |
180.0 |
| H8 |
CAH |
CAI |
CAJ |
179.4 |
180.0 |
| H8 |
CAH |
CAI |
H9 |
359.4 |
360.0 |
| CAH |
CAI |
H9 |
CAJ |
180.0 |
180.0 |
| H9 |
CAI |
CAH |
H8 |
359.4 |
360.0 |
| H9 |
CAI |
CAJ |
H10 |
0.0 |
360.0 |
| H10 |
CAJ |
CAI |
H9 |
0.0 |
360.0 |
| H11 |
CAK |
CAJ |
H10 |
0.2 |
360.0 |
| CAQ |
CAO |
H12 |
CAP |
241.8 |
120.0 |
| H12 |
CAO |
CAP |
H16 |
61.7 |
300.0 |
| H12 |
CAO |
CAP |
H17 |
181.7 |
60.0 |
| H12 |
CAO |
CAP |
H18 |
301.7 |
180.0 |
| H13 |
CAQ |
CAO |
CAP |
180.0 |
180.0 |
| H13 |
CAQ |
CAO |
H12 |
298.2 |
60.0 |
| H14 |
CAQ |
H13 |
H15 |
120.0 |
120.0 |
| H14 |
CAQ |
CAO |
CAP |
300.0 |
300.0 |
| H14 |
CAQ |
CAO |
H12 |
58.2 |
180.0 |
| H13 |
CAQ |
H14 |
H15 |
240.0 |
240.0 |
| H15 |
CAQ |
CAO |
CAP |
60.0 |
60.0 |
| H15 |
CAQ |
CAO |
H12 |
178.2 |
300.0 |
| H13 |
CAQ |
H15 |
H14 |
120.0 |
120.0 |
| H16 |
CAP |
CAO |
H12 |
61.7 |
300.0 |
| CAO |
CAP |
H16 |
H17 |
120.0 |
120.1 |
| CAO |
CAP |
H16 |
H18 |
240.0 |
239.9 |
| H17 |
CAP |
H16 |
H18 |
120.0 |
119.9 |
| H17 |
CAP |
CAO |
H12 |
181.7 |
60.0 |
| CAO |
CAP |
H17 |
H16 |
240.0 |
239.9 |
| CAO |
CAP |
H17 |
H18 |
120.0 |
120.0 |
| H16 |
CAP |
H17 |
H18 |
240.0 |
240.1 |
| H18 |
CAP |
CAO |
H12 |
301.7 |
180.0 |
| CAO |
CAP |
H18 |
H16 |
120.0 |
120.1 |
| CAO |
CAP |
H18 |
H17 |
240.0 |
240.0 |
| H16 |
CAP |
H18 |
H17 |
120.0 |
119.9 |