PDB Chemical Component AVJ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AVJ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAA |
NBE |
1.456 |
1.469 |
| CAA |
HAA |
1.100 |
1.090 |
| CAA |
HAAA |
1.100 |
1.090 |
| CAA |
HAAB |
1.100 |
1.090 |
| CAB |
NBE |
1.472 |
1.469 |
| CAB |
HAB |
1.100 |
1.089 |
| CAB |
HABA |
1.100 |
1.090 |
| CAB |
HABB |
1.100 |
1.090 |
| CAC |
NBE |
1.443 |
1.469 |
| CAC |
HAC |
1.100 |
1.090 |
| CAC |
HACA |
1.100 |
1.090 |
| CAC |
HACB |
1.100 |
1.090 |
| OAH |
CAX |
1.264 |
1.209 |
| OAL |
CAX |
1.265 |
1.342 |
| CAM |
NAT |
1.404 |
1.341 |
| CAM |
CAY |
1.371 |
1.348 |
| CAM |
HAM |
1.080 |
1.080 |
| CAP |
CAY |
1.531 |
1.507 |
| CAP |
CBC |
1.516 |
1.530 |
| CAP |
HAP |
1.100 |
1.090 |
| CAP |
HAPA |
1.100 |
1.091 |
| NAR |
CAY |
1.385 |
1.368 |
| NAR |
CAZ |
1.382 |
1.351 |
| NAR |
HNAR |
1.000 |
0.971 |
| NAT |
CAZ |
1.368 |
1.305 |
| CAX |
CBC |
1.505 |
1.507 |
| CAZ |
HAZ |
1.080 |
1.079 |
| CBC |
NBE |
1.462 |
1.469 |
| CBC |
HBC |
1.100 |
1.090 |
| OAL |
HOL |
0.950 |
0.967 |
Bond Angles for AVJ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NBE |
CAA |
HAA |
109.5 |
109.4 |
| NBE |
CAA |
HAAA |
109.5 |
109.5 |
| NBE |
CAA |
HAAB |
109.4 |
109.5 |
| CAA |
NBE |
CAB |
105.3 |
109.5 |
| CAA |
NBE |
CAC |
107.2 |
109.4 |
| CAA |
NBE |
CBC |
108.5 |
109.5 |
| HAA |
CAA |
HAAA |
109.5 |
109.5 |
| HAA |
CAA |
HAAB |
109.5 |
109.5 |
| HAAA |
CAA |
HAAB |
109.5 |
109.5 |
| NBE |
CAB |
HAB |
109.5 |
109.5 |
| NBE |
CAB |
HABA |
109.5 |
109.4 |
| NBE |
CAB |
HABB |
109.5 |
109.5 |
| CAB |
NBE |
CAC |
109.6 |
109.5 |
| CAB |
NBE |
CBC |
112.6 |
109.5 |
| HAB |
CAB |
HABA |
109.5 |
109.5 |
| HAB |
CAB |
HABB |
109.4 |
109.5 |
| HABA |
CAB |
HABB |
109.4 |
109.5 |
| NBE |
CAC |
HAC |
109.5 |
109.5 |
| NBE |
CAC |
HACA |
109.5 |
109.5 |
| NBE |
CAC |
HACB |
109.5 |
109.4 |
| CAC |
NBE |
CBC |
113.2 |
109.4 |
| HAC |
CAC |
HACA |
109.5 |
109.5 |
| HAC |
CAC |
HACB |
109.5 |
109.5 |
| HACA |
CAC |
HACB |
109.5 |
109.4 |
| OAH |
CAX |
OAL |
119.2 |
120.1 |
| OAH |
CAX |
CBC |
121.1 |
119.9 |
| OAL |
CAX |
CBC |
119.7 |
120.0 |
| CAX |
OAL |
HOL |
109.5 |
117.0 |
| NAT |
CAM |
CAY |
106.9 |
108.0 |
| NAT |
CAM |
HAM |
126.6 |
126.1 |
| CAM |
NAT |
CAZ |
107.8 |
109.3 |
| CAY |
CAM |
HAM |
126.6 |
125.9 |
| CAM |
CAY |
CAP |
126.2 |
126.6 |
| CAM |
CAY |
NAR |
109.5 |
106.8 |
| CAY |
CAP |
CBC |
109.9 |
109.5 |
| CAY |
CAP |
HAP |
109.4 |
109.5 |
| CAY |
CAP |
HAPA |
109.4 |
109.4 |
| CAP |
CAY |
NAR |
124.3 |
126.6 |
| CBC |
CAP |
HAP |
109.4 |
109.5 |
| CBC |
CAP |
HAPA |
109.3 |
109.5 |
| CAP |
CBC |
CAX |
107.4 |
109.5 |
| CAP |
CBC |
NBE |
112.7 |
109.4 |
| CAP |
CBC |
HBC |
107.8 |
109.5 |
| HAP |
CAP |
HAPA |
109.5 |
109.5 |
| CAY |
NAR |
CAZ |
106.7 |
107.3 |
| CAY |
NAR |
HNAR |
126.6 |
126.4 |
| CAZ |
NAR |
HNAR |
126.7 |
126.4 |
| NAR |
CAZ |
NAT |
109.1 |
108.6 |
| NAR |
CAZ |
HAZ |
125.4 |
125.7 |
| NAT |
CAZ |
HAZ |
125.5 |
125.7 |
| CAX |
CBC |
NBE |
112.4 |
109.5 |
| CAX |
CBC |
HBC |
107.9 |
109.5 |
| NBE |
CBC |
HBC |
108.5 |
109.5 |
Torsion Angles for AVJ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HAA |
CAA |
NBE |
HAAA |
240.0 |
240.0 |
| HAA |
CAA |
NBE |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
NBE |
HAAB |
240.0 |
240.0 |
| CAA |
NBE |
CAB |
HAB |
180.0 |
75.3 |
| CAA |
NBE |
CAB |
HABA |
300.0 |
195.3 |
| CAA |
NBE |
CAB |
HABB |
60.0 |
315.3 |
| CAB |
NBE |
CAA |
CAC |
243.3 |
240.0 |
| CAB |
NBE |
CAA |
CBC |
120.8 |
120.1 |
| CAA |
NBE |
CAC |
HAC |
180.0 |
69.0 |
| CAA |
NBE |
CAC |
HACA |
300.0 |
189.1 |
| CAA |
NBE |
CAC |
HACB |
60.0 |
309.0 |
| CAC |
NBE |
CAA |
CBC |
237.4 |
240.1 |
| CAP |
CBC |
NBE |
CAA |
181.8 |
76.3 |
| CAX |
CBC |
NBE |
CAA |
303.3 |
196.3 |
| CAA |
NBE |
CBC |
HBC |
62.5 |
316.3 |
| NBE |
CAA |
HAA |
HAAA |
120.0 |
120.0 |
| NBE |
CAA |
HAA |
HAAB |
240.0 |
240.0 |
| HAA |
CAA |
NBE |
CAB |
180.0 |
43.9 |
| HAA |
CAA |
NBE |
CAC |
296.7 |
163.9 |
| HAA |
CAA |
NBE |
CBC |
59.2 |
283.9 |
| HAAA |
CAA |
HAA |
HAAB |
120.0 |
120.0 |
| NBE |
CAA |
HAAA |
HAA |
240.0 |
240.0 |
| NBE |
CAA |
HAAA |
HAAB |
120.0 |
120.0 |
| HAAA |
CAA |
NBE |
CAB |
300.0 |
163.9 |
| HAAA |
CAA |
NBE |
CAC |
56.7 |
283.9 |
| HAAA |
CAA |
NBE |
CBC |
179.2 |
43.8 |
| HAA |
CAA |
HAAA |
HAAB |
240.0 |
240.0 |
| NBE |
CAA |
HAAB |
HAA |
120.0 |
120.0 |
| NBE |
CAA |
HAAB |
HAAA |
240.0 |
240.0 |
| HAAB |
CAA |
NBE |
CAB |
60.0 |
283.9 |
| HAAB |
CAA |
NBE |
CAC |
176.7 |
44.0 |
| HAAB |
CAA |
NBE |
CBC |
299.2 |
163.9 |
| HAA |
CAA |
HAAB |
HAAA |
120.0 |
120.0 |
| CAB |
NBE |
CAA |
HAA |
180.0 |
43.9 |
| CAB |
NBE |
CAA |
HAAA |
300.0 |
163.9 |
| CAB |
NBE |
CAA |
HAAB |
60.0 |
283.9 |
| CAA |
NBE |
CAB |
CAC |
115.0 |
120.0 |
| CAA |
NBE |
CAB |
CBC |
241.9 |
239.9 |
| HAB |
CAB |
NBE |
HABA |
240.0 |
240.0 |
| HAB |
CAB |
NBE |
HABB |
120.0 |
120.0 |
| HABA |
CAB |
NBE |
HABB |
240.0 |
240.0 |
| CAB |
NBE |
CAC |
HAC |
293.8 |
189.1 |
| CAB |
NBE |
CAC |
HACA |
53.8 |
309.1 |
| CAB |
NBE |
CAC |
HACB |
173.8 |
69.0 |
| CAC |
NBE |
CAB |
CBC |
126.9 |
120.0 |
| CAP |
CBC |
NBE |
CAB |
65.6 |
316.2 |
| CAX |
CBC |
NBE |
CAB |
187.1 |
76.2 |
| CAB |
NBE |
CBC |
HBC |
306.3 |
196.2 |
| NBE |
CAB |
HAB |
HABA |
120.0 |
120.0 |
| NBE |
CAB |
HAB |
HABB |
240.0 |
240.0 |
| HAB |
CAB |
NBE |
CAC |
65.0 |
315.3 |
| HAB |
CAB |
NBE |
CBC |
298.1 |
195.3 |
| HABA |
CAB |
HAB |
HABB |
120.0 |
120.0 |
| NBE |
CAB |
HABA |
HAB |
240.0 |
240.0 |
| NBE |
CAB |
HABA |
HABB |
120.0 |
120.0 |
| HABA |
CAB |
NBE |
CAC |
185.0 |
75.3 |
| HABA |
CAB |
NBE |
CBC |
58.1 |
315.3 |
| HAB |
CAB |
HABA |
HABB |
240.1 |
240.0 |
| NBE |
CAB |
HABB |
HAB |
120.0 |
120.0 |
| NBE |
CAB |
HABB |
HABA |
240.0 |
240.0 |
| HABB |
CAB |
NBE |
CAC |
305.0 |
195.3 |
| HABB |
CAB |
NBE |
CBC |
178.1 |
75.3 |
| HAB |
CAB |
HABB |
HABA |
120.0 |
120.0 |
| CAC |
NBE |
CAA |
HAA |
296.7 |
163.9 |
| CAC |
NBE |
CAA |
HAAA |
56.7 |
283.9 |
| CAC |
NBE |
CAA |
HAAB |
176.7 |
44.0 |
| CAA |
NBE |
CAC |
CAB |
246.2 |
240.0 |
| CAA |
NBE |
CAC |
CBC |
119.6 |
120.0 |
| CAC |
NBE |
CAB |
HAB |
65.0 |
315.3 |
| CAC |
NBE |
CAB |
HABA |
185.0 |
75.3 |
| CAC |
NBE |
CAB |
HABB |
305.0 |
195.3 |
| CAB |
NBE |
CAC |
CBC |
233.5 |
240.0 |
| HAC |
CAC |
NBE |
HACA |
240.0 |
240.0 |
| HAC |
CAC |
NBE |
HACB |
120.0 |
120.0 |
| HACA |
CAC |
NBE |
HACB |
240.0 |
240.1 |
| CAP |
CBC |
NBE |
CAC |
300.6 |
196.2 |
| CAX |
CBC |
NBE |
CAC |
62.1 |
316.2 |
| CAC |
NBE |
CBC |
HBC |
181.4 |
76.2 |
| NBE |
CAC |
HAC |
HACA |
120.0 |
120.0 |
| NBE |
CAC |
HAC |
HACB |
240.0 |
240.0 |
| HAC |
CAC |
NBE |
CBC |
60.4 |
309.1 |
| HACA |
CAC |
HAC |
HACB |
120.0 |
120.0 |
| NBE |
CAC |
HACA |
HAC |
240.0 |
240.0 |
| NBE |
CAC |
HACA |
HACB |
120.0 |
120.0 |
| HACA |
CAC |
NBE |
CBC |
180.4 |
69.1 |
| HAC |
CAC |
HACA |
HACB |
240.0 |
240.0 |
| NBE |
CAC |
HACB |
HAC |
120.0 |
120.0 |
| NBE |
CAC |
HACB |
HACA |
240.0 |
240.0 |
| HACB |
CAC |
NBE |
CBC |
300.4 |
189.1 |
| HAC |
CAC |
HACB |
HACA |
120.0 |
120.0 |
| OAL |
CAX |
OAH |
CBC |
179.0 |
180.0 |
| OAH |
CAX |
OAL |
HOL |
0.0 |
0.0 |
| CAP |
CBC |
CAX |
OAH |
55.7 |
80.5 |
| OAH |
CAX |
CBC |
NBE |
291.3 |
320.5 |
| OAH |
CAX |
CBC |
HBC |
171.7 |
200.5 |
| OAH |
CAX |
OAL |
CBC |
181.0 |
180.0 |
| CAP |
CBC |
CAX |
OAL |
236.7 |
260.5 |
| OAL |
CAX |
CBC |
NBE |
112.2 |
140.6 |
| OAL |
CAX |
CBC |
HBC |
352.6 |
20.5 |
| CAY |
CAM |
NAT |
HAM |
180.0 |
180.3 |
| NAT |
CAM |
CAY |
CAP |
179.5 |
180.0 |
| NAT |
CAM |
CAY |
NAR |
359.1 |
360.0 |
| NAR |
CAZ |
NAT |
CAM |
360.0 |
0.0 |
| CAM |
NAT |
CAZ |
HAZ |
180.0 |
180.0 |
| NAT |
CAM |
CAY |
HAM |
180.0 |
179.7 |
| CAY |
CAM |
NAT |
CAZ |
0.5 |
360.0 |
| CAM |
CAY |
CAP |
CBC |
237.2 |
121.1 |
| CAM |
CAY |
CAP |
HAP |
357.3 |
241.1 |
| CAM |
CAY |
CAP |
HAPA |
117.1 |
1.1 |
| CAP |
CAY |
CAM |
NAR |
180.3 |
180.0 |
| CAM |
CAY |
NAR |
CAZ |
0.9 |
0.0 |
| CAM |
CAY |
NAR |
HNAR |
180.9 |
180.0 |
| NAT |
CAM |
HAM |
CAY |
180.0 |
180.3 |
| HAM |
CAM |
NAT |
CAZ |
180.5 |
179.7 |
| HAM |
CAM |
CAY |
CAP |
359.5 |
0.3 |
| HAM |
CAM |
CAY |
NAR |
179.2 |
180.3 |
| CAP |
CAY |
CAM |
HAM |
359.5 |
0.3 |
| CAM |
CAY |
CAP |
NAR |
179.6 |
180.0 |
| CBC |
CAP |
CAY |
HAP |
239.9 |
240.0 |
| CBC |
CAP |
CAY |
HAPA |
120.1 |
120.0 |
| CAY |
CAP |
CBC |
CAX |
60.5 |
178.1 |
| CAY |
CAP |
CBC |
NBE |
184.9 |
298.1 |
| CAY |
CAP |
CBC |
HBC |
304.5 |
58.1 |
| HAP |
CAP |
CAY |
HAPA |
240.1 |
240.0 |
| CAP |
CAY |
NAR |
CAZ |
180.5 |
180.0 |
| CAP |
CAY |
NAR |
HNAR |
0.5 |
359.9 |
| CAA |
NBE |
CBC |
CAP |
181.8 |
76.3 |
| CAB |
NBE |
CBC |
CAP |
65.6 |
316.2 |
| CAC |
NBE |
CBC |
CAP |
300.6 |
196.2 |
| OAH |
CAX |
CBC |
CAP |
55.7 |
80.5 |
| OAL |
CAX |
CBC |
CAP |
236.7 |
260.5 |
| CAY |
CAP |
CBC |
HAP |
120.1 |
120.0 |
| CAY |
CAP |
CBC |
HAPA |
239.9 |
240.0 |
| CBC |
CAP |
CAY |
NAR |
57.6 |
301.1 |
| HAP |
CAP |
CBC |
HAPA |
119.8 |
120.0 |
| CAX |
CBC |
CAP |
NBE |
235.7 |
240.0 |
| CAX |
CBC |
CAP |
HBC |
116.0 |
120.0 |
| NBE |
CBC |
CAP |
HBC |
240.3 |
240.0 |
| CAY |
CAP |
HAP |
CBC |
239.6 |
240.0 |
| CAY |
CAP |
HAP |
HAPA |
119.8 |
120.0 |
| HAP |
CAP |
CAY |
NAR |
177.7 |
61.2 |
| CBC |
CAP |
HAP |
HAPA |
240.2 |
240.0 |
| HAP |
CAP |
CBC |
CAX |
300.4 |
58.1 |
| HAP |
CAP |
CBC |
NBE |
64.8 |
178.1 |
| HAP |
CAP |
CBC |
HBC |
184.4 |
298.1 |
| CAY |
CAP |
HAPA |
CBC |
120.4 |
120.0 |
| CAY |
CAP |
HAPA |
HAP |
240.2 |
240.0 |
| HAPA |
CAP |
CAY |
NAR |
297.5 |
181.1 |
| CBC |
CAP |
HAPA |
HAP |
119.8 |
120.0 |
| HAPA |
CAP |
CBC |
CAX |
180.6 |
298.1 |
| HAPA |
CAP |
CBC |
NBE |
304.9 |
58.1 |
| HAPA |
CAP |
CBC |
HBC |
64.6 |
178.1 |
| NAR |
CAY |
CAM |
HAM |
179.2 |
180.3 |
| CAM |
CAY |
NAR |
CAP |
180.3 |
180.0 |
| NAR |
CAY |
CAP |
CBC |
57.6 |
301.1 |
| NAR |
CAY |
CAP |
HAP |
177.7 |
61.2 |
| NAR |
CAY |
CAP |
HAPA |
297.5 |
181.1 |
| CAZ |
NAR |
CAY |
HNAR |
180.0 |
180.1 |
| CAY |
NAR |
CAZ |
NAT |
359.5 |
360.0 |
| CAY |
NAR |
CAZ |
HAZ |
179.5 |
180.0 |
| CAM |
NAT |
CAZ |
NAR |
360.0 |
0.0 |
| CAY |
NAR |
CAZ |
HNAR |
180.0 |
179.9 |
| NAT |
CAZ |
NAR |
HAZ |
180.0 |
180.0 |
| CAY |
NAR |
HNAR |
CAZ |
180.0 |
180.1 |
| HNAR |
NAR |
CAZ |
NAT |
179.5 |
180.0 |
| HNAR |
NAR |
CAZ |
HAZ |
359.5 |
0.0 |
| CAZ |
NAT |
CAM |
CAY |
0.5 |
360.0 |
| CAZ |
NAT |
CAM |
HAM |
180.5 |
179.7 |
| NAT |
CAZ |
NAR |
HNAR |
179.5 |
180.0 |
| NAR |
CAZ |
NAT |
HAZ |
180.0 |
180.0 |
| CAA |
NBE |
CBC |
CAX |
303.3 |
196.3 |
| CAB |
NBE |
CBC |
CAX |
187.1 |
76.2 |
| CAC |
NBE |
CBC |
CAX |
62.1 |
316.2 |
| OAH |
CAX |
CBC |
OAL |
179.0 |
180.0 |
| CBC |
CAX |
OAL |
HOL |
179.1 |
180.0 |
| CAX |
CBC |
CAP |
HAP |
300.4 |
58.1 |
| CAX |
CBC |
CAP |
HAPA |
180.6 |
298.1 |
| CAP |
CBC |
CAX |
NBE |
124.5 |
120.0 |
| CAP |
CBC |
CAX |
HBC |
244.1 |
240.0 |
| NBE |
CBC |
CAX |
HBC |
119.6 |
120.0 |
| HAZ |
CAZ |
NAR |
HNAR |
359.5 |
0.0 |
| NAR |
CAZ |
HAZ |
NAT |
180.0 |
180.0 |
| CBC |
NBE |
CAA |
HAA |
59.2 |
283.9 |
| CBC |
NBE |
CAA |
HAAA |
179.2 |
43.8 |
| CBC |
NBE |
CAA |
HAAB |
299.2 |
163.9 |
| CAA |
NBE |
CBC |
CAB |
116.2 |
120.1 |
| CAA |
NBE |
CBC |
CAC |
241.2 |
240.1 |
| CBC |
NBE |
CAB |
HAB |
298.1 |
195.3 |
| CBC |
NBE |
CAB |
HABA |
58.1 |
315.3 |
| CBC |
NBE |
CAB |
HABB |
178.1 |
75.3 |
| CAB |
NBE |
CBC |
CAC |
125.0 |
120.0 |
| CBC |
NBE |
CAC |
HAC |
60.4 |
309.1 |
| CBC |
NBE |
CAC |
HACA |
180.4 |
69.1 |
| CBC |
NBE |
CAC |
HACB |
300.4 |
189.1 |
| NBE |
CBC |
CAP |
HAP |
64.8 |
178.1 |
| NBE |
CBC |
CAP |
HAPA |
304.9 |
58.1 |
| CAP |
CBC |
NBE |
CAX |
238.5 |
240.0 |
| CAP |
CBC |
NBE |
HBC |
119.3 |
120.0 |
| CAX |
CBC |
NBE |
HBC |
240.8 |
240.0 |
| HBC |
CBC |
CAP |
HAP |
184.4 |
298.1 |
| HBC |
CBC |
CAP |
HAPA |
64.6 |
178.1 |
| CAP |
CBC |
HBC |
CAX |
115.6 |
120.0 |
| CAP |
CBC |
HBC |
NBE |
237.7 |
240.0 |
| CAX |
CBC |
HBC |
NBE |
122.1 |
120.0 |
| HOL |
OAL |
CAX |
CBC |
179.1 |
180.0 |