PDB Chemical Component AVD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AVD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C4 |
C5 |
1.377 |
1.385 |
| C5 |
F11 |
1.314 |
1.351 |
| C5 |
C6 |
1.409 |
1.386 |
| C1 |
C6 |
1.411 |
1.382 |
| C6 |
H6 |
1.079 |
1.080 |
| C3 |
C2 |
1.386 |
1.389 |
| N10 |
C2 |
1.339 |
1.401 |
| C2 |
C1 |
1.395 |
1.390 |
| C3 |
C4 |
1.389 |
1.382 |
| C4 |
H4 |
1.080 |
1.080 |
| O40 |
C39 |
1.249 |
1.216 |
| C34 |
C39 |
1.553 |
1.474 |
| C39 |
O41 |
1.243 |
1.347 |
| O41 |
HO41 |
0.950 |
0.967 |
| C33 |
C34 |
1.397 |
1.397 |
| C28 |
C34 |
1.414 |
1.403 |
| C32 |
C33 |
1.404 |
1.378 |
| C33 |
H33 |
1.080 |
1.080 |
| C31 |
C32 |
1.402 |
1.385 |
| C32 |
H32 |
1.080 |
1.080 |
| C31 |
C30 |
1.395 |
1.380 |
| C31 |
H31 |
1.080 |
1.081 |
| C30 |
C28 |
1.409 |
1.388 |
| C30 |
H30 |
1.080 |
1.080 |
| C28 |
N21 |
1.459 |
1.394 |
| C22 |
N21 |
1.402 |
1.342 |
| N21 |
C16 |
1.453 |
1.381 |
| C22 |
C23 |
1.408 |
1.380 |
| C22 |
H22 |
1.080 |
1.080 |
| C26 |
C23 |
1.578 |
1.470 |
| C23 |
C24 |
1.429 |
1.472 |
| O42 |
C26 |
1.225 |
1.215 |
| C26 |
O27 |
1.253 |
1.348 |
| O27 |
HO27 |
0.950 |
0.967 |
| C24 |
C17 |
1.396 |
1.475 |
| C24 |
O25 |
1.230 |
1.219 |
| C16 |
C17 |
1.386 |
1.405 |
| C17 |
C18 |
1.394 |
1.395 |
| C18 |
C13 |
1.380 |
1.382 |
| C18 |
H18 |
1.080 |
1.080 |
| C16 |
C15 |
1.378 |
1.393 |
| C15 |
C14 |
1.389 |
1.378 |
| C15 |
H15 |
1.080 |
1.080 |
| C14 |
CL29 |
1.756 |
1.736 |
| C14 |
C13 |
1.407 |
1.395 |
| C13 |
N10 |
1.381 |
1.399 |
| N10 |
HN10 |
1.000 |
0.970 |
| CL12 |
C3 |
1.715 |
1.736 |
| C1 |
F9 |
1.353 |
1.352 |
Bond Angles for AVD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C5 |
F11 |
118.8 |
119.9 |
| C6 |
C5 |
F11 |
118.9 |
120.0 |
| C5 |
C6 |
H6 |
121.0 |
119.9 |
| C1 |
C6 |
H6 |
121.0 |
120.0 |
| C3 |
C2 |
C1 |
118.2 |
119.9 |
| N10 |
C2 |
C1 |
119.4 |
120.0 |
| C2 |
C1 |
F9 |
120.0 |
120.1 |
| C3 |
C4 |
H4 |
121.3 |
120.0 |
| O40 |
C39 |
O41 |
122.9 |
120.0 |
| C39 |
O41 |
HO41 |
109.5 |
117.1 |
| C32 |
C33 |
H33 |
119.6 |
120.0 |
| C31 |
C32 |
H32 |
120.0 |
119.8 |
| C30 |
C31 |
H31 |
120.4 |
119.8 |
| C31 |
C30 |
C28 |
122.0 |
120.1 |
| C31 |
C30 |
H30 |
119.0 |
119.9 |
| C28 |
C30 |
H30 |
119.0 |
120.0 |
| C30 |
C28 |
N21 |
122.4 |
120.2 |
| C28 |
N21 |
C16 |
121.0 |
118.7 |
| C22 |
N21 |
C16 |
117.4 |
122.8 |
| N21 |
C16 |
C17 |
121.4 |
120.3 |
| N21 |
C16 |
C15 |
122.1 |
120.4 |
| C23 |
C22 |
H22 |
118.9 |
119.0 |
| C22 |
C23 |
C24 |
118.1 |
118.9 |
| C26 |
C23 |
C24 |
124.3 |
120.6 |
| C23 |
C24 |
C17 |
121.5 |
117.2 |
| C23 |
C24 |
O25 |
121.8 |
121.3 |
| O42 |
C26 |
O27 |
120.8 |
120.0 |
| C26 |
O27 |
HO27 |
109.5 |
117.0 |
| O25 |
C24 |
C17 |
116.7 |
121.4 |
| C24 |
C17 |
C18 |
119.3 |
121.0 |
| C17 |
C18 |
C13 |
123.3 |
119.6 |
| C17 |
C18 |
H18 |
118.3 |
120.2 |
| C13 |
C18 |
H18 |
118.4 |
120.3 |
| C18 |
C13 |
C14 |
114.7 |
120.1 |
| C18 |
C13 |
N10 |
121.8 |
119.9 |
| C16 |
C15 |
C14 |
122.1 |
120.1 |
| C16 |
C15 |
H15 |
119.0 |
119.9 |
| C14 |
C15 |
H15 |
119.0 |
120.0 |
| C15 |
C14 |
CL29 |
114.8 |
119.7 |
| C15 |
C14 |
C13 |
122.2 |
120.6 |
| CL29 |
C14 |
C13 |
123.0 |
119.7 |
| C14 |
C13 |
N10 |
123.5 |
119.9 |
| C13 |
N10 |
HN10 |
117.9 |
120.0 |
Torsion Angles for AVD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C5 |
C4 |
F11 |
182.1 |
179.7 |
| C4 |
C5 |
C6 |
H6 |
179.3 |
180.3 |
| F11 |
C5 |
C6 |
H6 |
1.4 |
360.0 |
| C4 |
C5 |
C6 |
F11 |
177.9 |
180.3 |
| C1 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C5 |
C6 |
C1 |
H6 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
F11 |
1.4 |
360.0 |
| N10 |
C2 |
C3 |
C1 |
181.8 |
179.8 |
| C3 |
C2 |
C1 |
F9 |
180.0 |
180.0 |
| C3 |
C2 |
N10 |
C1 |
178.1 |
180.2 |
| N10 |
C2 |
C1 |
F9 |
358.2 |
0.2 |
| C2 |
C1 |
C6 |
H6 |
179.0 |
180.0 |
| C3 |
C4 |
C5 |
F11 |
180.3 |
180.0 |
| C4 |
C3 |
C2 |
C1 |
1.0 |
0.2 |
| H4 |
C4 |
C5 |
F11 |
0.3 |
0.1 |
| O40 |
C39 |
O41 |
HO41 |
0.0 |
360.0 |
| C34 |
C39 |
O41 |
HO41 |
181.8 |
179.9 |
| C31 |
C32 |
C33 |
H33 |
180.4 |
180.0 |
| H32 |
C32 |
C33 |
H33 |
0.4 |
0.0 |
| C30 |
C31 |
C32 |
H32 |
179.8 |
180.0 |
| C28 |
C30 |
C31 |
H30 |
180.0 |
179.8 |
| C31 |
C30 |
C28 |
N21 |
182.1 |
180.1 |
| H31 |
C31 |
C32 |
H32 |
359.8 |
360.0 |
| H31 |
C31 |
C30 |
C28 |
181.1 |
179.8 |
| H31 |
C31 |
C30 |
H30 |
1.1 |
0.1 |
| C28 |
C30 |
C31 |
H31 |
181.1 |
179.8 |
| C31 |
C30 |
C28 |
H30 |
180.0 |
180.2 |
| C30 |
C28 |
N21 |
C16 |
65.8 |
89.9 |
| H30 |
C30 |
C31 |
H31 |
1.1 |
0.1 |
| C31 |
C30 |
H30 |
C28 |
180.0 |
179.8 |
| H30 |
C30 |
C28 |
N21 |
2.1 |
359.9 |
| N21 |
C28 |
C30 |
H30 |
2.1 |
359.9 |
| C22 |
N21 |
C28 |
C16 |
175.0 |
180.2 |
| C28 |
N21 |
C16 |
C17 |
177.8 |
179.7 |
| C28 |
N21 |
C16 |
C15 |
357.3 |
0.0 |
| C28 |
N21 |
C22 |
C16 |
184.9 |
179.8 |
| C22 |
N21 |
C16 |
C17 |
2.7 |
359.5 |
| C22 |
N21 |
C16 |
C15 |
182.1 |
179.8 |
| N21 |
C16 |
C15 |
C14 |
181.3 |
180.0 |
| N21 |
C16 |
C15 |
H15 |
1.3 |
359.9 |
| C23 |
C22 |
N21 |
C16 |
357.7 |
0.2 |
| C26 |
C23 |
C22 |
C24 |
180.9 |
180.0 |
| C22 |
C23 |
C24 |
C17 |
359.3 |
360.0 |
| C22 |
C23 |
C24 |
O25 |
178.9 |
180.0 |
| H22 |
C22 |
N21 |
C16 |
177.7 |
180.3 |
| H22 |
C22 |
C23 |
C24 |
181.4 |
180.0 |
| C26 |
C23 |
C22 |
H22 |
2.3 |
360.0 |
| C22 |
C23 |
C26 |
C24 |
179.0 |
180.0 |
| C26 |
C23 |
C24 |
C17 |
178.3 |
180.0 |
| C26 |
C23 |
C24 |
O25 |
357.9 |
0.0 |
| C24 |
C23 |
C22 |
H22 |
181.4 |
180.0 |
| O25 |
C24 |
C23 |
C17 |
179.6 |
180.0 |
| C23 |
C24 |
C17 |
C18 |
178.6 |
179.9 |
| O42 |
C26 |
C23 |
C24 |
185.7 |
180.0 |
| O42 |
C26 |
O27 |
HO27 |
360.0 |
360.0 |
| O27 |
C26 |
C23 |
C24 |
6.2 |
0.0 |
| N21 |
C16 |
C17 |
C24 |
357.9 |
0.5 |
| C23 |
C24 |
C17 |
O25 |
179.6 |
180.0 |
| C24 |
C17 |
C18 |
C13 |
180.4 |
180.0 |
| C24 |
C17 |
C18 |
H18 |
0.4 |
0.1 |
| C23 |
C24 |
O25 |
C17 |
180.4 |
180.0 |
| O25 |
C24 |
C17 |
C18 |
358.9 |
359.9 |
| N21 |
C16 |
C17 |
C15 |
179.5 |
180.3 |
| C16 |
C17 |
C18 |
C13 |
357.7 |
0.2 |
| C16 |
C17 |
C18 |
H18 |
177.7 |
180.3 |
| N21 |
C16 |
C17 |
C18 |
180.5 |
180.3 |
| C13 |
C18 |
C17 |
H18 |
180.0 |
180.0 |
| C17 |
C18 |
C13 |
C14 |
1.5 |
359.2 |
| C17 |
C18 |
C13 |
N10 |
180.9 |
180.0 |
| C17 |
C18 |
C13 |
H18 |
180.0 |
180.0 |
| C15 |
C14 |
C13 |
C18 |
0.3 |
1.1 |
| CL29 |
C14 |
C13 |
C18 |
178.4 |
180.3 |
| C14 |
C13 |
C18 |
N10 |
180.6 |
179.3 |
| C18 |
C13 |
N10 |
HN10 |
182.2 |
71.5 |
| C17 |
C18 |
H18 |
C13 |
180.0 |
180.0 |
| H18 |
C18 |
C13 |
C14 |
181.5 |
179.2 |
| H18 |
C18 |
C13 |
N10 |
0.9 |
359.9 |
| N21 |
C16 |
C15 |
C17 |
180.5 |
179.7 |
| C14 |
C15 |
C16 |
H15 |
180.0 |
180.0 |
| C16 |
C15 |
C14 |
CL29 |
180.3 |
179.9 |
| C16 |
C15 |
C14 |
C13 |
358.6 |
359.2 |
| C18 |
C13 |
C14 |
C15 |
0.3 |
1.1 |
| C16 |
C15 |
C14 |
H15 |
180.0 |
180.0 |
| CL29 |
C14 |
C15 |
C13 |
181.8 |
180.8 |
| C15 |
C14 |
C13 |
N10 |
180.9 |
180.3 |
| C16 |
C15 |
H15 |
C14 |
180.0 |
180.0 |
| H15 |
C15 |
C14 |
CL29 |
0.3 |
360.0 |
| H15 |
C15 |
C14 |
C13 |
178.6 |
179.2 |
| C18 |
C13 |
C14 |
CL29 |
178.4 |
180.3 |
| CL29 |
C14 |
C15 |
H15 |
0.3 |
360.0 |
| C15 |
C14 |
CL29 |
C13 |
178.2 |
179.2 |
| CL29 |
C14 |
C13 |
N10 |
359.0 |
359.5 |
| C14 |
C13 |
C18 |
H18 |
181.5 |
179.2 |
| C18 |
C13 |
C14 |
N10 |
179.4 |
180.7 |
| C13 |
C14 |
C15 |
H15 |
178.6 |
179.2 |
| C15 |
C14 |
C13 |
CL29 |
181.9 |
180.8 |
| C14 |
C13 |
N10 |
HN10 |
1.5 |
252.2 |
| C13 |
N10 |
C2 |
C1 |
260.1 |
17.8 |
| N10 |
C13 |
C18 |
H18 |
0.9 |
359.9 |
| C18 |
C13 |
N10 |
C14 |
180.7 |
179.3 |
| HN10 |
N10 |
C2 |
C1 |
80.1 |
197.8 |
| CL12 |
C3 |
C2 |
C1 |
179.6 |
180.0 |
| CL12 |
C3 |
C4 |
H4 |
358.7 |
0.2 |
| F9 |
C1 |
C6 |
H6 |
359.8 |
359.7 |