PDB Chemical Component AV9

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AV9

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.439	1.365
C1	C6	1.435	1.403
C1	O34	1.387	1.359
C2	C3	1.408	1.406
C3	C4	1.451	1.416
C3	N7	1.364	1.338
C4	C5	1.431	1.403
C4	C10	1.437	1.413
C5	C6	1.428	1.365
C6	O33	1.393	1.360
N7	C8	1.365	1.313
C8	C9	1.394	1.389
C9	C10	1.434	1.384
C10	O11	1.415	1.356
O11	C12	1.370	1.359
C12	C13	1.444	1.388
C12	C17	1.406	1.387
C13	C11	1.420	1.381
C15	C16	1.437	1.388
C15	N28	1.418	1.401
C15	C11	1.429	1.390
C16	C17	1.401	1.381
O25	C30	1.359	1.336
O25	N21	1.389	1.210
N28	C35	1.404	1.348
O33	C49	1.434	1.429
O34	C53	1.439	1.429
C11	CL4	1.733	1.736
C35	O36	1.231	1.219
C35	N37	1.402	1.334
N37	C38	1.402	1.338
C38	C43	1.429	1.415
C38	N21	1.339	1.352
C40	C30	1.473	1.506
C43	C30	1.356	1.356
C2	H2	1.080	1.079
C5	H5	1.080	1.079
C8	H8	1.080	1.080
C9	H9	1.080	1.079
C13	H13	1.080	1.080
C17	H17	1.081	1.081
C16	H16	1.080	1.081
N28	H28	1.000	0.970
N21	H21	1.000	0.970
C49	H491	1.100	1.091
C49	H492	1.100	1.090
C49	H493	1.099	1.090
C53	H531	1.100	1.090
C53	H532	1.100	1.089
C53	H533	1.100	1.090
C43	H43	1.080	1.081
C40	H401	1.100	1.090
C40	H402	1.100	1.090
C40	H403	1.100	1.090

Bond Angles for AV9

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	119.4	120.9
C2	C1	O34	125.1	119.5
C1	C2	C3	122.2	119.8
C1	C2	H2	118.9	120.2
C6	C1	O34	115.5	119.5
C1	C6	C5	118.7	120.6
C1	C6	O33	116.2	119.7
C1	O34	C53	119.1	117.0
C2	C3	C4	118.6	119.2
C2	C3	N7	119.4	120.9
C3	C2	H2	118.9	120.1
C4	C3	N7	122.0	119.9
C3	C4	C5	119.4	119.8
C3	C4	C10	117.2	118.9
C3	N7	C8	119.3	121.6
C5	C4	C10	123.4	121.2
C4	C5	C6	121.7	119.7
C4	C5	H5	119.1	120.2
C4	C10	C9	119.6	118.0
C4	C10	O11	114.7	121.0
C5	C6	O33	125.1	119.7
C6	C5	H5	119.2	120.2
C6	O33	C49	119.3	117.0
N7	C8	C9	123.8	121.8
N7	C8	H8	118.1	119.1
C8	C9	C10	118.1	119.7
C9	C8	H8	118.1	119.1
C8	C9	H9	120.9	120.1
C9	C10	O11	125.7	121.0
C10	C9	H9	120.9	120.2
C10	O11	C12	121.6	118.0
O11	C12	C13	121.5	120.0
O11	C12	C17	117.1	120.0
C13	C12	C17	121.5	120.0
C12	C13	C11	119.1	120.0
C12	C13	H13	120.4	120.0
C12	C17	C16	119.0	120.1
C12	C17	H17	120.5	119.9
C13	C11	C15	119.5	119.9
C13	C11	CL4	119.2	120.0
C11	C13	H13	120.4	120.0
C16	C15	N28	120.4	120.0
C16	C15	C11	119.6	120.0
C15	C16	C17	121.3	120.0
C15	C16	H16	119.4	120.0
C11	C15	N28	120.0	120.0
C15	N28	C35	122.4	120.0
C15	N28	H28	118.8	120.0
C15	C11	CL4	121.3	120.0
C16	C17	H17	120.5	120.0
C17	C16	H16	119.3	120.0
C30	O25	N21	109.8	112.1
O25	C30	C40	117.6	126.2
O25	N21	C38	105.7	110.5
O25	N21	H21	127.1	124.7
N28	C35	O36	123.7	120.0
N28	C35	N37	110.8	120.0
C35	N28	H28	118.8	120.0
O33	C49	H491	109.5	109.5
O33	C49	H492	109.5	109.5
O33	C49	H493	109.5	109.4
O34	C53	H531	109.5	109.5
O34	C53	H532	109.5	109.5
O34	C53	H533	109.5	109.5
O36	C35	N37	125.5	120.0
C35	N37	C38	124.9	120.0
N37	C38	C43	128.8	127.2
N37	C38	N21	120.9	127.2
C43	C38	N21	110.3	105.7
C38	C43	C30	105.1	104.2
C38	C43	H43	127.4	127.9
C38	N21	H21	127.2	124.8
C30	C40	H401	109.5	109.5
C30	C40	H402	109.5	109.5
C30	C40	H403	109.5	109.5
H491	C49	H492	109.5	109.6
H491	C49	H493	109.5	109.4
H492	C49	H493	109.4	109.5
H531	C53	H532	109.5	109.5
H531	C53	H533	109.4	109.4
H532	C53	H533	109.5	109.4
H401	C40	H402	109.5	109.4
H401	C40	H403	109.5	109.5
H402	C40	H403	109.5	109.5

Torsion Angles for AV9

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	O34	179.8	180.4
C2	C1	C6	C5	0.3	359.9
C2	C1	C6	O33	180.4	180.0
C2	C1	O34	C53	359.9	0.0
C1	C2	C3	C4	359.8	359.9
C1	C2	C3	N7	179.6	180.0
C3	C2	C1	H2	180.0	180.1
C2	C1	C6	O34	180.2	179.6
C6	C1	C2	C3	360.0	0.1
C6	C1	C2	H2	180.0	180.0
C6	C1	O34	C53	180.1	179.7
C4	C5	C6	C1	359.7	0.1
C5	C6	C1	O33	179.9	179.9
C1	C6	C5	H5	179.7	180.0
C1	C6	O33	C49	179.7	180.0
C2	C1	O34	C6	179.8	180.4
O34	C1	C2	C3	180.2	179.7
O34	C1	C2	H2	0.2	359.7
O34	C1	C6	C5	180.1	180.3
O34	C1	C6	O33	0.2	0.3
C1	O34	C53	H531	180.0	179.9
C1	O34	C53	H532	300.0	300.0
C1	O34	C53	H533	60.0	60.0
C3	C2	C1	C6	360.0	0.1
C3	C2	C1	O34	180.2	179.7
C1	C2	C3	H2	180.0	179.9
C4	C3	C2	N7	180.1	179.9
C2	C3	C4	C5	0.2	0.1
C2	C3	C4	C10	180.1	180.0
C2	C3	N7	C8	180.1	180.0
C2	C3	C4	N7	179.9	180.0
C4	C3	C2	H2	179.8	180.0
C4	C3	N7	C8	359.9	0.1
C5	C4	C3	C10	180.1	180.1
C3	C4	C5	C6	0.1	359.9
C3	C4	C5	H5	180.0	180.0
C3	C4	C10	C9	359.7	0.0
C3	C4	C10	O11	179.6	180.0
C2	C3	N7	C4	180.1	179.9
N7	C3	C2	H2	359.6	0.0
N7	C3	C4	C5	180.3	180.0
N7	C3	C4	C10	0.3	360.0
C3	N7	C8	C9	359.9	359.9
C3	N7	C8	H8	179.9	180.0
C1	C6	C5	C4	359.7	0.1
C5	C4	C3	N7	180.3	180.0
C3	C4	C5	C10	179.9	179.9
C5	C4	C10	C9	179.6	179.9
C5	C4	C10	O11	359.5	360.0
C4	C5	C6	O33	179.5	180.0
C6	C5	C4	H5	180.0	179.9
C10	C4	C3	N7	0.3	360.0
C3	C4	C10	C5	180.1	180.1
C10	C4	C5	C6	180.1	180.0
C10	C4	C5	H5	0.1	0.1
C8	C9	C10	C4	0.2	360.0
C9	C10	C4	O11	180.1	180.0
C4	C10	C9	H9	180.2	180.0
C4	C10	O11	C12	167.9	175.2
C5	C6	C1	O34	180.1	180.3
C1	C6	C5	O33	180.1	180.1
C6	C5	C4	C10	180.1	180.0
C4	C5	C6	H5	180.0	180.1
C5	C6	O33	C49	359.8	0.0
O33	C6	C1	O34	0.2	0.3
C1	C6	O33	C5	179.9	179.9
O33	C6	C5	H5	359.6	360.0
C6	O33	C49	H491	180.0	59.9
C6	O33	C49	H492	300.0	180.0
C6	O33	C49	H493	60.0	300.0
N7	C8	C9	C10	0.0	0.0
C9	C8	N7	H8	180.0	179.9
N7	C8	C9	H9	180.0	180.0
C4	C10	C9	C8	0.2	360.0
N7	C8	C9	H8	180.0	180.1
C8	C9	C10	O11	180.3	180.0
C10	C9	C8	H9	180.0	180.1
C4	C10	C9	O11	179.9	180.0
C10	C9	C8	H8	180.0	180.0
C8	C9	C10	H9	180.0	179.9
C9	C10	O11	C12	347.8	355.2
C4	C10	O11	C9	180.1	180.0
O11	C10	C9	H9	0.3	0.0
C10	O11	C12	C13	76.6	75.5
C10	O11	C12	C17	256.8	255.3
C13	C12	O11	C17	179.8	180.2
O11	C12	C13	C11	180.5	180.0
O11	C12	C13	H13	0.5	0.1
O11	C12	C17	C16	179.7	180.0
O11	C12	C17	H17	359.7	359.9
O11	C12	C13	C17	180.2	179.8
C13	C12	C17	C16	359.9	359.8
C13	C12	C17	H17	179.9	179.7
C12	C13	C11	C15	359.8	0.1
C12	C13	C11	CL4	179.7	180.0
C11	C13	C12	H13	180.0	179.9
O11	C12	C17	C13	179.8	180.2
C17	C12	C13	C11	0.3	0.2
C17	C12	C13	H13	180.3	180.3
C15	C16	C17	C12	359.8	360.0
C16	C17	C12	H17	180.0	180.0
C12	C17	C16	H16	179.8	179.9
C11	C13	C12	C17	0.3	0.2
C12	C13	C11	H13	180.0	180.1
C16	C15	C11	C13	359.9	359.7
C13	C11	C15	N28	179.9	180.0
C15	C11	C13	CL4	180.1	180.1
C12	C17	C16	C15	359.8	360.0
C13	C11	C15	C16	359.9	359.7
C11	C15	C16	N28	180.0	180.3
C16	C15	N28	C35	45.1	34.6
C16	C15	N28	H28	225.1	214.6
C16	C15	C11	CL4	180.0	179.8
C15	C16	C17	H17	179.8	180.0
C17	C16	C15	H16	180.0	180.0
C16	C15	N28	C11	180.0	180.3
N28	C15	C16	C17	180.3	180.0
N28	C15	C16	H16	0.3	0.1
N28	C15	C11	CL4	0.0	0.1
C15	N28	C35	O36	0.2	355.7
C15	N28	C35	N37	180.7	175.7
C35	N28	C15	H28	180.0	180.0
C13	C11	C15	CL4	179.9	179.9
C15	C11	C13	H13	179.8	180.0
C16	C15	C11	N28	180.0	179.7
C11	C15	C16	C17	0.3	0.3
C11	C15	C16	H16	180.3	180.3
C11	C15	N28	C35	225.1	214.3
C11	C15	N28	H28	45.1	34.4
C12	C17	C16	H17	180.0	180.0
C17	C16	C15	N28	180.3	180.0
C17	C16	C15	C11	0.3	0.3
C15	C16	C17	H16	180.0	180.0
C30	O25	N21	C38	0.1	360.0
C30	O25	N21	H21	180.1	180.0
C38	C43	C30	O25	360.0	360.0
O25	C30	C40	H401	360.0	0.0
O25	C30	C40	H402	120.0	120.0
O25	C30	C40	H403	240.0	240.0
N21	O25	C30	C40	180.0	180.0
N37	C38	N21	O25	179.9	180.1
C43	C38	N21	O25	359.9	360.0
C38	N21	O25	H21	180.0	180.0
C15	N28	C35	H28	180.0	180.0
O36	C35	N28	N37	179.5	180.0
N28	C35	N37	C38	179.8	180.0
H491	C49	O33	H492	240.0	239.9
H491	C49	O33	H493	120.0	119.9
H492	C49	O33	H493	240.0	240.0
H531	C53	O34	H532	240.0	239.9
H531	C53	O34	H533	120.0	120.0
H532	C53	O34	H533	240.0	240.0
C13	C11	CL4	C15	180.1	180.1
CL4	C11	C13	H13	359.7	359.9
CL4	C11	C15	N28	0.0	0.1
N28	C35	O36	N37	180.6	180.0
O36	C35	N28	H28	180.2	175.7
O36	C35	N37	C38	0.3	360.0
N28	C35	N37	O36	179.5	180.0
N37	C35	N28	H28	0.7	355.7
C35	N37	C38	C43	0.4	0.0
C35	N37	C38	N21	180.5	179.9
O25	N21	C38	N37	179.9	180.1
C43	C38	N37	N21	179.9	180.1
N37	C38	C43	C30	180.1	179.9
N37	C38	C43	H43	0.1	360.0
N37	C38	N21	H21	359.8	0.1
O25	N21	C38	C43	359.9	360.0
N37	C38	C43	N21	180.1	179.9
C43	C38	N21	H21	179.9	180.0
O25	N21	C38	H21	180.0	180.0
N37	C38	N21	C43	179.9	180.1
N21	C38	C43	C30	0.1	0.0
N21	C38	C43	H43	180.1	180.1
C40	C30	O25	N21	180.0	180.0
C38	C43	C30	C40	179.9	180.0
H401	C40	C30	H402	240.0	240.0
H401	C40	C30	H403	120.0	120.0
H402	C40	C30	H403	240.0	240.0
C43	C30	O25	N21	360.0	0.0
C30	C43	C38	N21	0.1	0.0
C38	C43	C30	H43	180.0	180.0
C43	C30	C40	H401	180.1	180.0
C43	C30	C40	H402	300.1	300.0
C43	C30	C40	H403	60.1	60.0
H2	C2	C1	C6	180.0	180.0
H2	C2	C1	O34	0.2	359.7
C1	C2	H2	C3	180.0	180.1
H2	C2	C3	C4	179.8	180.0
H2	C2	C3	N7	359.6	0.0
H5	C5	C4	C10	0.1	0.1
C4	C5	H5	C6	180.0	179.9
H5	C5	C6	O33	359.6	360.0
N7	C8	H8	C9	180.0	179.9
H8	C8	C9	C10	180.0	180.0
H8	C8	C9	H9	0.0	359.9
C8	C9	H9	C10	180.0	180.1
H9	C9	C8	H8	0.0	359.9
H9	C9	C10	O11	0.3	0.0
H13	C13	C12	C17	180.3	180.3
C12	C13	H13	C11	180.0	179.9
H13	C13	C11	C15	179.8	180.0
H13	C13	C11	CL4	359.7	359.9
C12	C17	H17	C16	180.0	180.0
H17	C17	C16	H16	359.8	360.0
H16	C16	C15	N28	0.3	0.1
H16	C16	C15	C11	180.3	180.3
C15	C16	H16	C17	180.0	180.0
H16	C16	C17	H17	359.8	360.0
C15	N28	H28	C35	180.0	180.0
H28	N28	C35	O36	180.2	175.7
H28	N28	C35	N37	0.7	355.7
O25	N21	H21	C38	180.0	180.0
O33	C49	H491	H492	120.0	120.0
O33	C49	H491	H493	240.0	240.1
H492	C49	H491	H493	120.0	120.1
O33	C49	H492	H491	240.0	240.0
O33	C49	H492	H493	120.0	120.0
H491	C49	H492	H493	240.0	240.0
O33	C49	H493	H491	120.0	119.9
O33	C49	H493	H492	240.0	240.0
H491	C49	H493	H492	120.0	120.1
O34	C53	H531	H532	120.0	120.1
O34	C53	H531	H533	240.0	240.0
H532	C53	H531	H533	120.0	119.9
O34	C53	H532	H531	240.0	239.9
O34	C53	H532	H533	120.0	120.0
H531	C53	H532	H533	240.0	240.1
O34	C53	H533	H531	120.0	120.0
O34	C53	H533	H532	240.0	240.0
H531	C53	H533	H532	120.0	120.0
H43	C43	C38	N21	180.1	180.1
C38	C43	H43	C30	180.0	179.9
C30	C40	H401	H402	120.0	120.0
C30	C40	H401	H403	240.0	240.0
H402	C40	H401	H403	120.0	120.0
C30	C40	H402	H401	240.0	240.0
C30	C40	H402	H403	120.0	120.0
H401	C40	H402	H403	240.0	240.0
C30	C40	H403	H401	120.0	120.1
C30	C40	H403	H402	240.0	240.0
H401	C40	H403	H402	120.0	119.9