PDB Chemical Component AUP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AUP

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C1	C2	1.424	1.384
C1	C6	1.534	1.529
C1	C7	1.358	1.404
C2	C3	1.542	1.530
C2	C9	1.359	1.405
C3	C4	1.548	1.528
C3	H31	1.100	1.090
C3	H32	1.100	1.089
C4	C5	1.537	1.531
C4	H41	1.100	1.090
C4	H42	1.100	1.090
C5	C6	1.542	1.527
C5	H51	1.100	1.089
C5	H52	1.100	1.090
C6	H61	1.100	1.090
C6	H62	1.100	1.090
C7	P	1.799	1.834
C7	C36	1.480	1.477
P	C9	1.836	1.834
P	C27	1.829	1.814
C9	C19	1.506	1.477
N14	C15	1.380	1.318
N14	C19	1.394	1.328
C15	C16	1.405	1.383
C15	H15	1.080	1.080
C16	C17	1.410	1.388
C16	H16	1.080	1.080
C17	C18	1.421	1.383
C17	H17	1.080	1.080
C18	C19	1.421	1.397
C18	H18	1.080	1.080
C24	C25	1.424	1.383
C24	C29	1.426	1.383
C24	H24	1.080	1.079
C25	C26	1.426	1.381
C25	H25	1.080	1.080
C26	C27	1.424	1.391
C26	H26	1.079	1.080
C27	C28	1.422	1.391
C28	C29	1.420	1.380
C28	H28	1.080	1.081
C29	H29	1.080	1.081
N35	C36	1.385	1.329
N35	C40	1.372	1.318
C36	C37	1.426	1.397
C37	C38	1.408	1.383
C37	H37	1.080	1.080
C38	C39	1.415	1.388
C38	H38	1.080	1.080
C39	C40	1.411	1.382
C39	H39	1.080	1.080
C40	H40	1.080	1.080

Bond Angles for AUP

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C2	C1	C6	120.3	122.7
C2	C1	C7	114.3	119.1
C1	C2	C3	120.9	122.8
C1	C2	C9	114.2	119.2
C6	C1	C7	125.4	118.1
C1	C6	C5	114.1	109.2
C1	C6	H61	106.9	109.5
C1	C6	H62	107.9	109.5
C1	C7	P	112.0	102.2
C1	C7	C36	132.0	128.9
C3	C2	C9	124.9	118.1
C2	C3	C4	117.6	109.2
C2	C3	H31	104.9	109.5
C2	C3	H32	106.9	109.5
C2	C9	P	110.8	102.2
C2	C9	C19	129.9	128.9
C4	C3	H31	105.0	109.5
C4	C3	H32	106.8	109.5
C3	C4	C5	113.6	108.8
C3	C4	H41	107.1	109.6
C3	C4	H42	108.1	109.5
H31	C3	H32	116.1	109.6
C5	C4	H41	107.2	109.6
C5	C4	H42	108.1	109.6
C4	C5	C6	111.8	108.8
C4	C5	H51	108.1	109.6
C4	C5	H52	108.7	109.6
H41	C4	H42	112.8	109.7
C6	C5	H51	108.2	109.6
C6	C5	H52	108.7	109.5
C5	C6	H61	106.9	109.5
C5	C6	H62	108.0	109.6
H51	C5	H52	111.3	109.7
H61	C6	H62	113.2	109.5
P	C7	C36	116.0	128.9
C7	P	C9	88.7	97.2
C7	P	C27	120.5	95.0
C7	C36	N35	117.5	119.8
C7	C36	C37	122.7	119.7
C9	P	C27	102.8	95.0
P	C9	C19	119.3	128.9
P	C27	C26	137.2	120.1
P	C27	C28	101.8	120.1
C9	C19	N14	108.8	119.7
C9	C19	C18	135.1	119.7
C15	N14	C19	125.9	121.5
N14	C15	C16	118.2	120.9
N14	C15	H15	120.9	119.6
N14	C19	C18	116.2	120.5
C16	C15	H15	120.9	119.5
C15	C16	C17	118.3	119.4
C15	C16	H16	120.9	120.3
C17	C16	H16	120.9	120.3
C16	C17	C18	122.3	118.6
C16	C17	H17	118.8	120.7
C18	C17	H17	118.8	120.7
C17	C18	C19	119.0	119.0
C17	C18	H18	120.5	120.5
C19	C18	H18	120.5	120.5
C25	C24	C29	120.1	120.1
C25	C24	H24	119.9	119.9
C24	C25	C26	120.2	120.1
C24	C25	H25	119.9	119.9
C29	C24	H24	119.9	119.9
C24	C29	C28	119.9	120.1
C24	C29	H29	120.0	119.9
C26	C25	H25	119.9	120.0
C25	C26	C27	119.1	119.9
C25	C26	H26	120.4	120.0
C27	C26	H26	120.5	120.1
C26	C27	C28	121.0	119.8
C27	C28	C29	119.7	119.9
C27	C28	H28	120.2	120.0
C29	C28	H28	120.2	120.0
C28	C29	H29	120.0	120.0
C36	N35	C40	123.6	121.6
N35	C36	C37	119.8	120.5
N35	C40	C39	117.9	120.9
N35	C40	H40	121.1	119.5
C36	C37	C38	117.4	119.0
C36	C37	H37	121.3	120.5
C38	C37	H37	121.3	120.5
C37	C38	C39	121.3	118.6
C37	C38	H38	119.3	120.7
C39	C38	H38	119.3	120.8
C38	C39	C40	120.0	119.4
C38	C39	H39	120.0	120.3
C40	C39	H39	120.0	120.2
C39	C40	H40	121.0	119.6

Torsion Angles for AUP

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C6	C1	C2	C7	180.2	180.1
C2	C1	C6	C5	334.3	342.5
C2	C1	C6	H61	216.3	222.7
C2	C1	C6	H62	94.3	102.5
C2	C1	C7	P	0.4	360.0
C2	C1	C7	C36	180.4	180.0
C3	C2	C1	C9	179.9	180.1
C1	C2	C3	C4	360.0	342.6
C1	C2	C3	H31	243.8	222.7
C1	C2	C3	H32	120.0	102.5
C1	C2	C9	P	359.6	360.0
C1	C2	C9	C19	179.5	180.0
C2	C1	C6	C7	179.8	179.9
C6	C1	C2	C3	0.1	0.2
C6	C1	C2	C9	180.2	180.1
C6	C1	C7	P	180.2	179.9
C6	C1	C7	C36	0.3	359.9
C4	C5	C6	C1	50.8	51.8
C1	C6	C5	H51	169.8	291.9
C1	C6	C5	H52	290.8	171.5
C5	C6	C1	H61	118.0	119.8
C5	C6	C1	H62	240.0	240.0
H61	C6	C1	H62	122.0	120.2
C2	C1	C7	C6	180.2	180.1
C7	C1	C2	C3	179.9	180.1
C7	C1	C2	C9	0.0	0.0
C7	C1	C6	C5	154.4	162.6
C7	C1	C6	H61	36.5	42.8
C7	C1	C6	H62	274.5	282.6
P	C7	C1	C36	180.0	180.0
C1	C7	P	C9	359.5	0.0
C1	C7	P	C27	255.4	264.3
C1	C7	C36	N35	36.5	359.7
C1	C7	C36	C37	216.3	180.0
C3	C2	C1	C6	0.1	0.2
C3	C2	C1	C7	179.9	180.1
C1	C2	C3	C9	180.1	179.9
C3	C2	C9	P	179.7	179.9
C3	C2	C9	C19	359.7	360.0
C4	C3	C2	H31	116.2	119.8
C4	C3	C2	H32	240.0	240.1
C2	C3	C4	C5	25.7	51.7
C2	C3	C4	H41	267.5	291.9
C2	C3	C4	H42	145.6	171.5
H31	C3	C2	H32	123.8	120.2
C9	C2	C1	C6	180.2	180.1
C9	C2	C1	C7	0.0	0.0
C1	C2	C9	C3	179.9	180.1
C9	C2	C3	C4	179.8	162.6
C9	C2	C3	H31	63.7	42.8
C9	C2	C3	H32	299.8	282.6
C7	P	C9	C2	0.5	0.0
C2	C9	P	C27	121.5	95.7
P	C9	C2	C19	180.1	179.9
C2	C9	C19	N14	314.3	359.7
C2	C9	C19	C18	134.2	180.0
C4	C3	C2	C9	179.8	162.6
C2	C3	C4	H31	243.8	240.2
C2	C3	C4	H32	120.0	119.9
H31	C3	C4	H32	236.2	239.8
C5	C4	C3	H41	118.2	119.8
C5	C4	C3	H42	240.0	240.2
C3	C4	C5	C6	309.5	287.7
C3	C4	C5	H51	190.5	47.5
C3	C4	C5	H52	69.5	168.0
H41	C4	C3	H42	121.8	120.4
H31	C3	C2	C9	63.7	42.8
C2	C3	H31	C4	124.6	119.6
C2	C3	H31	H32	242.3	239.8
C4	C3	H31	H32	117.7	120.2
H31	C3	C4	C5	141.8	171.6
H31	C3	C4	H41	23.6	51.7
H31	C3	C4	H42	261.8	291.3
H32	C3	C2	C9	299.8	282.6
C2	C3	H32	C4	233.3	240.3
C2	C3	H32	H31	116.6	120.1
C4	C3	H32	H31	243.3	239.8
H32	C3	C4	C5	265.6	291.8
H32	C3	C4	H41	147.5	172.0
H32	C3	C4	H42	25.6	51.6
C1	C6	C5	C4	50.8	51.8
C5	C4	C3	H31	141.8	171.6
C5	C4	C3	H32	265.6	291.8
C3	C4	C5	H41	241.8	240.2
C3	C4	C5	H42	120.0	119.7
H41	C4	C5	H42	238.2	239.5
C6	C5	C4	H51	119.0	240.1
C6	C5	C4	H52	240.0	119.7
C4	C5	C6	H61	168.7	171.7
C4	C5	C6	H62	290.8	291.8
H51	C5	C4	H52	121.0	239.6
H41	C4	C3	H31	23.6	51.7
H41	C4	C3	H32	147.5	172.0
C3	C4	H41	C5	122.3	119.3
C3	C4	H41	H42	241.1	239.7
C5	C4	H41	H42	118.8	120.4
H41	C4	C5	C6	67.7	47.5
H41	C4	C5	H51	308.7	167.4
H41	C4	C5	H52	187.7	287.8
H42	C4	C3	H31	261.8	291.3
H42	C4	C3	H32	25.6	51.6
C3	C4	H42	C5	236.6	240.7
C3	C4	H42	H41	118.3	120.3
C5	C4	H42	H41	241.7	239.6
H42	C4	C5	C6	189.5	168.0
H42	C4	C5	H51	70.5	287.8
H42	C4	C5	H52	309.5	48.3
C5	C6	C1	C7	154.4	162.6
C1	C6	C5	H61	242.1	240.1
C1	C6	C5	H62	120.0	120.0
C6	C5	C4	H41	67.7	47.5
C6	C5	C4	H42	189.5	168.0
C4	C5	C6	H51	241.0	119.9
C4	C5	C6	H52	120.0	240.3
H51	C5	C6	H52	239.0	120.4
H61	C6	C5	H62	237.9	239.9
H51	C5	C4	H41	308.7	167.4
H51	C5	C4	H42	70.5	287.8
C4	C5	H51	C6	121.3	240.6
C4	C5	H51	H52	240.7	120.3
C6	C5	H51	H52	119.4	239.7
H51	C5	C6	H61	287.7	51.8
H51	C5	C6	H62	49.8	171.9
H52	C5	C4	H41	187.7	287.8
H52	C5	C4	H42	309.5	48.3
C4	C5	H52	C6	238.1	119.3
C4	C5	H52	H51	119.0	239.6
C6	C5	H52	H51	240.9	120.3
H52	C5	C6	H61	48.7	291.4
H52	C5	C6	H62	170.8	51.5
H61	C6	C1	C7	36.5	42.8
C1	C6	H61	C5	122.6	119.7
C1	C6	H61	H62	241.3	239.8
H61	C6	C5	H51	287.7	51.8
H61	C6	C5	H52	48.7	291.4
C5	C6	H61	H62	118.8	120.2
H62	C6	C1	C7	274.5	282.6
C1	C6	H62	C5	236.2	240.2
C1	C6	H62	H61	118.1	120.1
H62	C6	C5	H51	49.8	171.9
H62	C6	C5	H52	170.8	51.5
C5	C6	H62	H61	241.9	239.9
C1	C7	P	C36	180.0	180.0
C2	C9	P	C7	0.5	0.0
P	C7	C36	N35	216.6	179.7
P	C7	C36	C37	36.4	360.0
C9	P	C7	C27	104.1	95.7
C7	P	C9	C19	180.6	179.9
C7	P	C27	C26	37.2	180.0
C7	P	C27	C28	217.2	359.7
C1	C7	C36	P	180.0	180.0
C36	C7	P	C9	179.5	180.0
C36	C7	P	C27	75.4	84.3
C7	C36	N35	C40	179.8	179.7
N35	C36	C7	C37	180.2	179.8
C7	C36	C37	C38	180.2	180.0
C7	C36	C37	H37	0.2	360.0
C2	C9	P	C19	179.9	180.1
C9	P	C7	C36	179.5	180.0
C7	P	C9	C27	239.0	264.3
C9	P	C27	C26	301.0	82.2
C9	P	C27	C28	121.1	262.0
P	C9	C19	N14	134.2	179.7
P	C9	C19	C18	314.1	0.1
C27	P	C7	C36	75.4	84.3
C7	P	C27	C9	96.1	97.7
C27	P	C9	C19	301.6	275.6
C25	C26	C27	P	180.0	180.0
P	C27	C26	H26	0.0	0.0
C26	C27	P	C28	180.0	180.2
P	C27	C28	C29	179.9	179.7
P	C27	C28	H28	359.9	0.2
C2	C9	C19	P	180.1	179.9
C19	C9	P	C27	301.6	275.6
C15	N14	C19	C9	179.9	179.8
N14	C19	C9	C18	180.1	179.7
C17	C18	C19	C9	180.0	180.0
C9	C19	C18	H18	360.0	359.9
C9	C19	N14	C15	179.9	179.8
C15	N14	C19	C18	360.0	359.4
C16	C15	N14	H15	180.0	180.2
N14	C15	C16	C17	359.8	359.7
N14	C15	C16	H16	179.8	179.7
C9	C19	N14	C18	179.9	180.3
C19	N14	C15	C16	0.2	0.6
C19	N14	C15	H15	180.1	180.3
C17	C18	C19	N14	359.9	0.3
N14	C19	C18	H18	179.9	180.2
C16	C15	N14	C19	0.2	0.6
N14	C15	C16	H15	180.0	179.8
C17	C16	C15	H16	180.0	180.0
C15	C16	C17	C18	0.1	0.0
C15	C16	C17	H17	180.1	180.0
H15	C15	N14	C19	180.1	180.3
N14	C15	H15	C16	180.0	180.2
H15	C15	C16	C17	179.8	179.9
H15	C15	C16	H16	359.8	360.0
C17	C16	C15	H15	179.8	179.9
C15	C16	C17	H16	180.0	180.0
C18	C17	C16	H17	180.0	180.0
C16	C17	C18	C19	0.1	359.9
C16	C17	C18	H18	180.1	180.0
H16	C16	C15	H15	359.8	360.0
C15	C16	H16	C17	180.0	180.0
H16	C16	C17	C18	180.1	180.0
H16	C16	C17	H17	0.1	360.0
C9	C19	C18	C17	180.0	180.0
N14	C19	C18	C17	359.9	0.3
C18	C17	C16	H16	180.1	180.0
C16	C17	C18	H17	180.0	180.0
C19	C18	C17	H18	180.0	179.9
H17	C17	C16	H16	0.1	360.0
C16	C17	H17	C18	180.0	180.0
H17	C17	C18	C19	180.0	180.0
H17	C17	C18	H18	0.0	0.0
C9	C19	C18	N14	180.1	179.7
C19	C18	C17	H17	180.0	180.0
C17	C18	C19	H18	180.0	180.1
H18	C18	C17	H17	0.0	0.0
C17	C18	H18	C19	180.0	179.9
C29	C24	C25	H24	180.0	180.1
C25	C24	C29	C28	360.0	359.7
C25	C24	C29	H29	180.0	180.1
C26	C25	C24	H25	180.0	179.9
C24	C25	C26	C27	0.1	0.1
C24	C25	C26	H26	180.1	180.0
C25	C24	C29	H24	180.0	179.9
C29	C24	C25	C26	359.9	360.0
C29	C24	C25	H25	179.9	180.1
C27	C28	C29	C24	0.1	0.6
C24	C29	C28	H28	180.1	180.1
C28	C29	C24	H29	180.0	179.7
C25	C24	H24	C29	180.0	180.1
H24	C24	C25	C26	179.9	179.9
H24	C24	C25	H25	359.9	0.1
H24	C24	C29	C28	180.0	179.8
H24	C24	C29	H29	360.0	0.1
P	C27	C26	C25	180.0	180.0
C26	C25	C24	C29	359.9	360.0
C26	C25	C24	H24	179.9	179.9
C24	C25	C26	H25	180.0	180.1
C27	C26	C25	H26	180.0	180.0
C25	C26	C27	C28	359.9	0.2
H25	C25	C24	C29	179.9	180.1
H25	C25	C24	H24	359.9	0.1
C24	C25	H25	C26	180.0	179.9
H25	C25	C26	C27	180.1	179.9
H25	C25	C26	H26	0.1	359.9
P	C27	C26	C28	180.1	179.8
C27	C26	C25	H25	180.1	179.9
C25	C26	C27	H26	180.0	180.0
C26	C27	C28	C29	360.0	359.5
C26	C27	C28	H28	179.9	180.0
H26	C26	C25	H25	0.1	359.9
C25	C26	H26	C27	180.0	180.0
H26	C26	C27	C28	180.0	180.2
P	C27	C28	C26	180.0	180.2
C24	C29	C28	C27	0.1	0.6
C28	C27	C26	H26	180.0	180.2
C29	C28	C27	H28	180.0	179.5
C27	C28	C29	H29	180.1	180.2
C28	C29	C24	H24	180.0	179.8
C24	C29	C28	H29	180.0	180.4
C27	C28	C29	H28	180.0	180.5
C27	C28	H28	C29	180.0	179.5
H28	C28	C29	H29	0.1	359.7
H29	C29	C24	H24	360.0	0.1
C24	C29	H29	C28	180.0	179.7
H29	C29	C28	H28	0.1	359.7
C7	C36	N35	C37	179.8	180.2
C36	N35	C40	C39	0.0	0.5
C36	N35	C40	H40	180.0	180.3
N35	C36	C37	C38	360.0	0.2
N35	C36	C37	H37	180.0	180.2
C40	N35	C36	C37	360.0	359.5
C38	C39	C40	N35	0.0	359.7
N35	C40	C39	H39	180.0	179.8
C39	C40	N35	H40	180.0	180.3
C7	C36	C37	N35	180.2	179.8
C37	C36	N35	C40	360.0	359.5
C38	C37	C36	H37	180.0	180.0
C36	C37	C38	C39	0.0	0.1
C36	C37	C38	H38	180.1	180.0
C36	C37	C38	H37	180.0	180.0
C39	C38	C37	H38	180.0	180.1
C37	C38	C39	C40	360.0	360.0
C37	C38	C39	H39	180.0	179.9
C36	C37	H37	C38	180.0	180.0
H37	C37	C38	C39	180.0	180.0
H37	C37	C38	H38	0.1	359.9
N35	C40	C39	C38	0.0	359.7
C39	C38	C37	H37	180.0	180.0
C37	C38	C39	H38	180.0	179.9
C40	C39	C38	H39	180.0	180.0
C38	C39	C40	H40	180.0	180.0
H38	C38	C37	H37	0.1	359.9
C37	C38	H38	C39	180.0	180.1
H38	C38	C39	C40	179.9	180.1
H38	C38	C39	H39	359.9	0.0
N35	C40	C39	H40	180.0	179.7
C40	C39	C38	H38	179.9	180.1
C38	C39	C40	H39	180.0	180.0
H39	C39	C38	H38	359.9	0.0
C38	C39	H39	C40	180.0	180.0
H39	C39	C40	H40	0.0	0.1
N35	C40	H40	C39	180.0	180.3
H40	C40	C39	H39	0.0	0.1