PDB Chemical Component AU1
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AU1
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O2A |
PA |
1.510 |
1.480 |
| O2B |
PB |
1.510 |
1.481 |
| O1B |
PB |
1.510 |
1.610 |
| O1A |
PA |
1.513 |
1.611 |
| PB |
N3A |
1.752 |
1.683 |
| PB |
O3B |
1.510 |
1.610 |
| PA |
N3A |
1.752 |
1.684 |
| PA |
O5' |
1.613 |
1.609 |
| N6 |
C6 |
1.355 |
1.383 |
| N1 |
C6 |
1.357 |
1.330 |
| N1 |
C2 |
1.353 |
1.321 |
| O5' |
C5' |
1.427 |
1.430 |
| C5' |
C4' |
1.524 |
1.531 |
| C6 |
C5 |
1.490 |
1.405 |
| C2 |
N3 |
1.353 |
1.316 |
| N3 |
C4 |
1.364 |
1.329 |
| C5 |
C4 |
1.477 |
1.405 |
| C5 |
N7 |
1.347 |
1.355 |
| O4' |
C4' |
1.429 |
1.444 |
| O4' |
C1' |
1.427 |
1.444 |
| C4 |
N9 |
1.338 |
1.372 |
| N7 |
C8 |
1.358 |
1.301 |
| C4' |
C3' |
1.528 |
1.544 |
| N9 |
C8 |
1.351 |
1.364 |
| N9 |
C1' |
1.492 |
1.465 |
| C1' |
C2' |
1.526 |
1.545 |
| C3' |
C2' |
1.525 |
1.545 |
| C3' |
O3' |
1.436 |
1.428 |
| C2' |
O2' |
1.436 |
1.429 |
| O1A |
H1 |
0.950 |
0.967 |
| N3A |
H2 |
1.000 |
1.009 |
| O1B |
H3 |
0.950 |
0.967 |
| O3B |
H4 |
0.950 |
0.967 |
| C5' |
H5 |
1.100 |
1.090 |
| C5' |
H6 |
1.100 |
1.089 |
| C4' |
H7 |
1.100 |
1.090 |
| C3' |
H8 |
1.100 |
1.090 |
| O3' |
H9 |
0.950 |
0.967 |
| C2' |
H10 |
1.100 |
1.091 |
| O2' |
H11 |
0.950 |
0.967 |
| C1' |
H12 |
1.100 |
1.090 |
| C8 |
H13 |
1.080 |
1.080 |
| C2 |
H14 |
1.080 |
1.079 |
| N6 |
H15 |
1.000 |
0.970 |
| N6 |
H16 |
1.000 |
0.971 |
Bond Angles for AU1
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O2A |
PA |
N3A |
109.6 |
109.5 |
| O2A |
PA |
O5' |
106.1 |
109.5 |
| O2B |
PB |
O3B |
113.0 |
109.5 |
| O1B |
PB |
O3B |
114.1 |
109.5 |
| O1A |
PA |
N3A |
107.1 |
109.4 |
| O1A |
PA |
O5' |
108.5 |
109.5 |
| PA |
O1A |
H1 |
109.5 |
114.0 |
| PB |
N3A |
H2 |
105.4 |
111.0 |
| PB |
O3B |
H4 |
109.5 |
114.0 |
| N3A |
PA |
O5' |
106.8 |
109.5 |
| PA |
N3A |
H2 |
105.4 |
110.9 |
| PA |
O5' |
C5' |
122.6 |
123.0 |
| N1 |
C2 |
H14 |
118.5 |
118.7 |
| O5' |
C5' |
C4' |
109.6 |
109.4 |
| O5' |
C5' |
H5 |
109.5 |
109.5 |
| O5' |
C5' |
H6 |
109.4 |
109.5 |
| C5' |
C4' |
C3' |
112.3 |
110.3 |
| C4' |
C5' |
H5 |
109.4 |
109.4 |
| C4' |
C5' |
H6 |
109.5 |
109.5 |
| C5' |
C4' |
H7 |
108.7 |
110.3 |
| C5 |
N7 |
C8 |
107.4 |
109.4 |
| O4' |
C4' |
H7 |
110.0 |
110.4 |
| O4' |
C1' |
H12 |
108.8 |
110.4 |
| C4 |
N9 |
C8 |
108.0 |
107.4 |
| N9 |
C8 |
N7 |
111.6 |
110.0 |
| N7 |
C8 |
H13 |
124.2 |
125.0 |
| C4' |
C3' |
C2' |
105.7 |
104.0 |
| C4' |
C3' |
O3' |
109.0 |
110.6 |
| C3' |
C4' |
H7 |
108.7 |
110.3 |
| C4' |
C3' |
H8 |
109.9 |
110.5 |
| N9 |
C8 |
H13 |
124.2 |
125.0 |
| N9 |
C1' |
H12 |
107.9 |
110.3 |
| C1' |
C2' |
H10 |
109.4 |
110.6 |
| O3' |
C3' |
C2' |
110.9 |
110.5 |
| C3' |
C2' |
O2' |
112.0 |
110.5 |
| C2' |
C3' |
H8 |
109.9 |
110.5 |
| C3' |
C2' |
H10 |
109.5 |
110.5 |
| O3' |
C3' |
H8 |
111.2 |
110.6 |
| C3' |
O3' |
H9 |
109.5 |
114.1 |
| O2' |
C2' |
H10 |
110.7 |
110.4 |
| C2' |
O2' |
H11 |
109.5 |
114.0 |
| H5 |
C5' |
H6 |
109.4 |
109.5 |
| H15 |
N6 |
H16 |
109.5 |
120.0 |
Torsion Angles for AU1
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1A |
PA |
O2A |
N3A |
237.0 |
240.0 |
| O1A |
PA |
O2A |
O5' |
122.0 |
120.0 |
| O2A |
PA |
O1A |
H1 |
0.0 |
180.0 |
| N3A |
PA |
O2A |
O5' |
245.0 |
240.0 |
| O2A |
PA |
N3A |
H2 |
224.9 |
176.1 |
| O2A |
PA |
O5' |
C5' |
100.5 |
315.0 |
| O1B |
PB |
O2B |
O3B |
227.6 |
120.0 |
| O2B |
PB |
N3A |
H2 |
157.0 |
63.9 |
| O2B |
PB |
O3B |
H4 |
0.0 |
60.0 |
| O2B |
PB |
O1B |
O3B |
131.8 |
240.0 |
| O1B |
PB |
N3A |
H2 |
35.8 |
183.9 |
| O1B |
PB |
O3B |
H4 |
132.3 |
300.0 |
| O2A |
PA |
O1A |
N3A |
124.3 |
120.0 |
| O2A |
PA |
O1A |
O5' |
239.2 |
240.0 |
| N3A |
PA |
O1A |
O5' |
115.0 |
120.0 |
| O1A |
PA |
N3A |
H2 |
354.2 |
296.1 |
| O1A |
PA |
O5' |
C5' |
332.6 |
195.0 |
| PB |
N3A |
PA |
O5' |
232.4 |
180.0 |
| PA |
N3A |
PB |
H2 |
237.8 |
236.1 |
| O3B |
PB |
N3A |
H2 |
276.3 |
303.9 |
| O2A |
PA |
N3A |
O5' |
114.6 |
120.0 |
| O1A |
PA |
N3A |
O5' |
243.9 |
240.0 |
| N3A |
PA |
O1A |
H1 |
235.7 |
60.0 |
| PB |
N3A |
PA |
H2 |
122.1 |
123.9 |
| N3A |
PA |
O5' |
C5' |
217.4 |
75.0 |
| O2A |
PA |
O5' |
N3A |
243.1 |
240.0 |
| O1A |
PA |
O5' |
N3A |
115.2 |
120.0 |
| O5' |
PA |
O1A |
H1 |
120.8 |
300.0 |
| O5' |
PA |
N3A |
H2 |
110.3 |
56.0 |
| PA |
O5' |
C5' |
C4' |
176.1 |
180.0 |
| PA |
O5' |
C5' |
H5 |
296.1 |
299.9 |
| PA |
O5' |
C5' |
H6 |
56.1 |
60.0 |
| C6 |
N1 |
C2 |
H14 |
180.3 |
180.1 |
| O5' |
C5' |
C4' |
C3' |
259.1 |
185.0 |
| C4' |
C5' |
O5' |
H5 |
240.0 |
240.1 |
| C4' |
C5' |
O5' |
H6 |
120.0 |
120.0 |
| O5' |
C5' |
C4' |
H7 |
19.3 |
307.2 |
| H5 |
C5' |
O5' |
H6 |
240.1 |
239.9 |
| O5' |
C5' |
C4' |
H5 |
120.0 |
119.9 |
| O5' |
C5' |
C4' |
H6 |
240.0 |
240.0 |
| O4' |
C4' |
C5' |
H7 |
120.2 |
122.3 |
| C5' |
C4' |
C3' |
C2' |
237.4 |
217.1 |
| C5' |
C4' |
C3' |
O3' |
118.1 |
98.5 |
| C3' |
C4' |
C5' |
H7 |
239.7 |
237.8 |
| C5' |
C4' |
C3' |
H8 |
356.0 |
335.7 |
| H5 |
C5' |
C4' |
H6 |
119.9 |
120.1 |
| C5 |
C4 |
N9 |
C8 |
0.8 |
360.0 |
| N9 |
C8 |
N7 |
C5 |
0.7 |
360.0 |
| C5 |
N7 |
C8 |
H13 |
180.7 |
180.2 |
| O4' |
C4' |
C5' |
H5 |
19.5 |
309.6 |
| O4' |
C4' |
C5' |
H6 |
259.5 |
189.6 |
| C5' |
C4' |
O4' |
H7 |
240.6 |
237.7 |
| C3' |
C4' |
O4' |
H7 |
118.3 |
118.9 |
| O4' |
C4' |
C3' |
H8 |
116.4 |
94.6 |
| C1' |
O4' |
C4' |
H7 |
255.3 |
281.6 |
| N9 |
C1' |
O4' |
H12 |
118.1 |
122.3 |
| O4' |
C1' |
C2' |
H10 |
259.8 |
265.2 |
| C4 |
N9 |
C8 |
N7 |
359.0 |
0.0 |
| C4 |
N9 |
C8 |
H13 |
179.0 |
179.8 |
| C4 |
N9 |
C1' |
H12 |
39.7 |
323.1 |
| N9 |
C8 |
N7 |
H13 |
180.0 |
179.7 |
| C3' |
C4' |
C5' |
H5 |
139.0 |
65.1 |
| C3' |
C4' |
C5' |
H6 |
19.1 |
305.0 |
| C5' |
C4' |
C3' |
H7 |
120.3 |
122.2 |
| O4' |
C4' |
C3' |
H7 |
240.8 |
241.1 |
| O3' |
C3' |
C4' |
C2' |
240.8 |
241.3 |
| C4' |
C3' |
C2' |
O2' |
231.6 |
241.3 |
| C2' |
C3' |
C4' |
H8 |
241.4 |
241.4 |
| C4' |
C3' |
C2' |
H10 |
108.4 |
118.7 |
| O3' |
C3' |
C4' |
H8 |
122.1 |
122.8 |
| C4' |
C3' |
O3' |
H9 |
180.0 |
179.9 |
| C5 |
N7 |
C8 |
N9 |
0.7 |
360.0 |
| N7 |
C8 |
N9 |
H13 |
180.0 |
180.3 |
| C8 |
N9 |
C1' |
H12 |
218.7 |
142.8 |
| O4' |
C1' |
N9 |
H12 |
241.3 |
237.7 |
| N9 |
C1' |
C2' |
H10 |
22.8 |
24.3 |
| C1' |
C2' |
C3' |
H8 |
232.4 |
241.4 |
| C3' |
C2' |
C1' |
H10 |
117.5 |
118.7 |
| O2' |
C2' |
C1' |
H10 |
238.1 |
237.4 |
| C1' |
C2' |
O2' |
H11 |
180.0 |
183.9 |
| C4' |
C3' |
C2' |
O3' |
242.0 |
241.3 |
| C2' |
C3' |
C4' |
H7 |
117.1 |
95.0 |
| C4' |
C3' |
C2' |
H8 |
118.6 |
118.6 |
| C1' |
C2' |
C3' |
H10 |
242.6 |
241.3 |
| O3' |
C3' |
C2' |
H8 |
236.6 |
237.3 |
| C2' |
C3' |
O3' |
H9 |
64.0 |
65.3 |
| O2' |
C2' |
C3' |
H10 |
123.2 |
122.6 |
| C3' |
C2' |
O2' |
H11 |
296.4 |
298.6 |
| C4' |
C3' |
O3' |
C2' |
116.0 |
114.6 |
| O3' |
C3' |
C4' |
H7 |
357.8 |
336.3 |
| C4' |
C3' |
O3' |
H8 |
238.7 |
237.3 |
| O3' |
C3' |
C2' |
O2' |
349.6 |
0.0 |
| C2' |
C3' |
O3' |
H8 |
122.6 |
122.7 |
| O3' |
C3' |
C2' |
H10 |
226.4 |
237.4 |
| C1' |
C2' |
O2' |
H10 |
121.1 |
122.7 |
| O2' |
C2' |
C3' |
H8 |
113.0 |
122.7 |
| C3' |
C2' |
O2' |
H10 |
237.5 |
237.4 |
| H1 |
O1A |
PA |
N3A |
235.7 |
60.0 |
| H1 |
O1A |
PA |
O5' |
120.8 |
300.0 |
| H2 |
N3A |
PA |
O5' |
110.3 |
56.0 |
| H3 |
O1B |
PB |
O3B |
228.2 |
300.0 |
| O5' |
C5' |
H5 |
C4' |
239.9 |
240.1 |
| O5' |
C5' |
H5 |
H6 |
119.9 |
120.0 |
| H5 |
C5' |
C4' |
C3' |
139.0 |
65.1 |
| C4' |
C5' |
H5 |
H6 |
240.0 |
240.0 |
| H5 |
C5' |
C4' |
H7 |
259.3 |
187.3 |
| O5' |
C5' |
H6 |
C4' |
120.1 |
120.0 |
| O5' |
C5' |
H6 |
H5 |
240.0 |
240.0 |
| H6 |
C5' |
C4' |
C3' |
19.1 |
305.0 |
| C4' |
C5' |
H6 |
H5 |
119.9 |
120.0 |
| H6 |
C5' |
C4' |
H7 |
139.4 |
67.2 |
| C5' |
C4' |
H7 |
C3' |
237.5 |
237.8 |
| H7 |
C4' |
C5' |
H5 |
259.3 |
187.3 |
| H7 |
C4' |
C5' |
H6 |
139.4 |
67.2 |
| H7 |
C4' |
C3' |
C2' |
117.1 |
95.0 |
| H7 |
C4' |
C3' |
O3' |
357.8 |
336.3 |
| H7 |
C4' |
C3' |
H8 |
235.7 |
213.6 |
| C4' |
C3' |
H8 |
C2' |
244.0 |
245.4 |
| C4' |
C3' |
H8 |
O3' |
120.8 |
122.8 |
| H8 |
C3' |
C4' |
H7 |
235.7 |
213.6 |
| O3' |
C3' |
H8 |
C2' |
123.2 |
122.7 |
| H8 |
C3' |
C2' |
O2' |
113.0 |
122.7 |
| H8 |
C3' |
C2' |
H10 |
349.8 |
0.1 |
| H8 |
C3' |
O3' |
H9 |
301.3 |
302.6 |
| H9 |
O3' |
C3' |
C2' |
64.0 |
65.3 |
| H9 |
O3' |
C3' |
H8 |
301.3 |
302.6 |
| C3' |
C2' |
H10 |
O2' |
123.9 |
122.6 |
| H10 |
C2' |
C3' |
H8 |
349.8 |
0.1 |
| H10 |
C2' |
O2' |
H11 |
58.9 |
61.2 |
| H11 |
O2' |
C2' |
H10 |
58.9 |
61.2 |
| H12 |
C1' |
C2' |
H10 |
142.9 |
146.4 |
| N9 |
C8 |
H13 |
N7 |
180.0 |
180.3 |