PDB Chemical Component ATM

Ideal Model

Chemical Description

Name 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE
Formula C10 H14 N5 O7 P
Formal charge 0
Molecular weight 347.221 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 3'-azido-3'-deoxythymidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2S,3S,5R)-3-azido-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@H]2C[C@H](N=[N+]=[N-])[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2C[CH](N=[N+]=[N-])[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)N=[N+]=[N-]
InChI descriptor InChI=1S/C10H14N5O7P/c1-5-3-15(10(17)12-9(5)16)8-2-6(13-14-11)7(22-8)4-21-23(18,19)20/h3,6-8H,2,4H2,1H3,(H,12,16,17)(H2,18,19,20)/t6-,7+,8+/m0/s1
InChIKey descriptor OIFWQOKDSPDILA-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 2TMK
Processing site EBI