PDB Chemical Component ATL

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ATL

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
OP1 P 1.479 1.479
P OP2 1.481 1.610
P O5' 1.614 1.610
P OXT 1.623 1.609
OP2 HO2P 0.950 0.967
O5' C5' 1.418 1.428
C5' C4' 1.532 1.530
C5' H5' 1.092 1.090
C5' H5'' 1.091 1.090
C4' O4' 1.423 1.456
C4' C3' 1.523 1.572
C4' C6' 1.538 1.560
O4' C1' 1.421 1.441
C3' O3' 1.418 1.428
C3' C2' 1.526 1.572
C3' H3' 1.093 1.090
O3' HA 0.950 0.967
C2' O2' 1.424 1.457
C2' C1' 1.535 1.561
C2' H2' 1.089 1.089
O2' C6' 1.421 1.441
C1' N1 1.492 1.465
C1' H1' 1.090 1.089
C6' H9'1 1.090 1.088
C6' H9'2 1.091 1.090
N1 C2 1.398 1.345
N1 C6 1.379 1.367
C2 O2 1.229 1.216
C2 N3 1.389 1.346
N3 C4 1.389 1.348
N3 H3 1.010 0.970
C4 O4 1.231 1.218
C4 C5 1.459 1.416
C5 C5M 1.518 1.507
C5 C6 1.356 1.349
C5M H71 1.089 1.090
C5M H72 1.093 1.090
C5M H73 1.089 1.090
C6 H6 1.077 1.080
OXT HXT 0.950 0.967

Bond Angles for ATL

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.6 109.4
OP1 P O5' 108.4 109.5
OP1 P OXT 107.8 109.5
OP2 P O5' 108.0 109.5
OP2 P OXT 108.3 109.5
P OP2 HO2P 119.5 106.8
O5' P OXT 103.6 109.5
P O5' C5' 122.3 106.8
P OXT HXT 107.9 106.9
O5' C5' C4' 108.8 109.5
O5' C5' H5' 109.4 109.5
O5' C5' H5'' 110.3 109.5
C4' C5' H5' 110.1 109.5
C4' C5' H5'' 108.9 109.5
C5' C4' O4' 110.5 116.3
C5' C4' C3' 117.3 117.4
C5' C4' C6' 115.4 116.4
H5' C5' H5'' 109.3 109.3
O4' C4' C3' 102.4 101.2
O4' C4' C6' 109.1 103.8
C4' O4' C1' 106.2 107.0
C3' C4' C6' 101.1 99.0
C4' C3' O3' 115.6 112.6
C4' C3' C2' 88.8 93.2
C4' C3' H3' 111.7 112.5
C4' C6' O2' 102.6 105.3
C4' C6' H9'1 111.3 110.3
C4' C6' H9'2 110.5 110.3
O4' C1' C2' 101.7 105.4
O4' C1' N1 113.3 110.2
O4' C1' H1' 108.3 110.3
O3' C3' C2' 113.1 112.6
O3' C3' H3' 112.4 112.1
C3' O3' HA 115.6 106.8
C2' C3' H3' 113.3 112.6
C3' C2' O2' 105.1 101.0
C3' C2' C1' 99.5 99.0
C3' C2' H2' 114.6 116.7
O2' C2' C1' 109.4 103.8
O2' C2' H2' 113.5 116.3
C2' O2' C6' 105.1 107.0
C1' C2' H2' 113.4 117.2
C2' C1' N1 114.0 110.3
C2' C1' H1' 109.8 110.3
O2' C6' H9'1 111.6 110.3
O2' C6' H9'2 110.0 110.2
N1 C1' H1' 109.6 110.3
C1' N1 C2 118.4 119.7
C1' N1 C6 120.8 119.7
H9'1 C6' H9'2 110.6 110.3
C2 N1 C6 120.6 120.6
N1 C2 O2 123.4 119.6
N1 C2 N3 116.2 121.0
N1 C6 C5 122.2 119.7
N1 C6 H6 119.4 120.1
O2 C2 N3 120.4 119.4
C2 N3 C4 126.3 120.2
C2 N3 H3 116.9 120.0
C4 N3 H3 116.7 119.8
N3 C4 O4 119.6 120.3
N3 C4 C5 114.1 119.4
O4 C4 C5 126.3 120.3
C4 C5 C5M 121.1 120.4
C4 C5 C6 120.5 119.1
C5M C5 C6 118.4 120.5
C5 C5M H71 110.0 109.5
C5 C5M H72 110.2 109.5
C5 C5M H73 109.7 109.5
C5 C6 H6 118.4 120.2
H71 C5M H72 108.1 109.4
H71 C5M H73 109.9 109.5
H72 C5M H73 108.9 109.5

Torsion Angles for ATL

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 235.7 240.0
OP2 P OP1 OXT 124.2 120.0
OP1 P OP2 HO2P 180.0 300.0
O5' P OP1 OXT 248.5 240.0
OP1 P O5' C5' 33.7 60.0
OP1 P OXT HXT 180.0 180.0
OP1 P OP2 O5' 124.5 120.0
OP1 P OP2 OXT 236.0 240.0
O5' P OP2 OXT 111.6 120.0
OP2 P O5' C5' 164.6 180.0
OP2 P OXT HXT 49.3 60.0
OP1 P O5' OP2 229.1 240.0
OP1 P O5' OXT 114.4 120.0
OP2 P O5' OXT 245.3 240.0
O5' P OP2 HO2P 55.5 180.0
O5' P OXT HXT 294.8 300.0
P O5' C5' C4' 156.3 180.0
P O5' C5' H5' 276.7 300.1
P O5' C5' H5'' 37.0 59.9
OP1 P OXT OP2 130.7 120.0
OP1 P OXT O5' 245.3 240.0
OP2 P OXT O5' 114.5 120.0
OXT P OP2 HO2P 304.0 60.0
OXT P O5' C5' 279.3 300.0
HO2P OP2 P O5' 55.5 180.0
HO2P OP2 P OXT 304.0 60.0
C5' O5' P OXT 279.3 300.0
C4' C5' O5' H5' 239.6 239.9
C4' C5' O5' H5'' 119.3 120.1
O5' C5' C4' O4' 287.6 299.0
O5' C5' C4' C3' 170.9 179.0
O5' C5' C4' C6' 51.9 61.9
H5' C5' O5' H5'' 239.7 240.1
O5' C5' C4' H5' 120.0 120.1
O5' C5' C4' H5'' 239.8 239.9
H5' C5' C4' H5'' 119.8 119.9
O4' C4' C5' C3' 116.8 120.0
O4' C4' C5' C6' 235.7 237.1
C5' C4' O4' C1' 196.8 193.9
C3' C4' C5' C6' 119.0 117.1
C5' C4' C3' O3' 294.7 298.9
C5' C4' C3' C2' 179.5 182.7
C5' C4' C3' H3' 64.8 66.7
C5' C4' C6' O2' 165.9 158.9
C5' C4' C6' H9'1 285.4 278.0
C5' C4' C6' H9'2 48.6 40.0
O5' C5' H5' C4' 240.4 239.9
O5' C5' H5' H5'' 120.9 119.9
C4' C5' H5' H5'' 240.5 240.0
H5' C5' C4' O4' 167.7 178.9
H5' C5' C4' C3' 50.9 58.9
H5' C5' C4' C6' 291.9 301.8
O5' C5' H5'' C4' 119.3 120.1
O5' C5' H5'' H5' 239.7 240.1
C4' C5' H5'' H5' 120.3 120.0
H5'' C5' C4' O4' 47.9 59.1
H5'' C5' C4' C3' 291.1 299.0
H5'' C5' C4' C6' 172.1 181.9
O4' C4' C5' H5' 167.7 178.9
O4' C4' C5' H5'' 47.9 59.1
C5' C4' O4' C3' 234.3 231.6
C5' C4' O4' C6' 127.8 129.3
C3' C4' O4' C6' 253.5 257.7
O4' C4' C3' O3' 173.6 171.1
O4' C4' C3' C2' 58.4 55.0
O4' C4' C3' H3' 303.7 298.9
O4' C4' C6' O2' 290.9 288.1
O4' C4' C6' H9'1 50.4 47.2
O4' C4' C6' H9'2 173.6 169.2
C4' O4' C1' C2' 358.5 3.3
C4' O4' C1' N1 235.8 244.3
C4' O4' C1' H1' 114.1 122.3
C3' C4' C5' H5' 50.9 58.9
C3' C4' C5' H5'' 291.1 299.0
C5' C4' C3' O4' 121.1 127.7
C5' C4' C3' C6' 233.7 233.8
O4' C4' C3' C6' 112.6 106.1
C3' C4' O4' C1' 322.5 322.3
C3' C4' C6' O2' 38.3 32.1
C3' C4' C6' H9'1 157.8 151.1
C3' C4' C6' H9'2 281.0 273.2
O3' C3' C4' C2' 115.2 116.1
O3' C3' C4' H3' 229.9 232.2
C4' C3' O3' HA 180.0 194.8
C2' C3' C4' H3' 114.7 116.0
C4' C3' C2' O2' 55.9 55.1
C4' C3' C2' C1' 302.7 309.0
C4' C3' C2' H2' 181.3 182.3
C6' C4' C5' H5' 291.9 301.8
C6' C4' C5' H5'' 172.1 181.9
C5' C4' C6' O4' 235.0 230.8
C5' C4' C6' C3' 127.6 126.8
O4' C4' C6' C3' 252.6 256.0
C6' C4' O4' C1' 69.0 64.6
C6' C4' C3' O3' 61.0 65.0
C6' C4' C3' C2' 305.8 308.9
C6' C4' C3' H3' 191.1 192.8
C2' O2' C6' C4' 358.3 3.4
O2' C6' C4' H9'1 240.5 241.0
O2' C6' C4' H9'2 117.3 118.9
H9'1 C6' C4' H9'2 236.7 237.9
C1' O4' C4' C3' 322.5 322.3
C1' O4' C4' C6' 69.0 64.6
C3' C2' C1' O4' 39.5 32.1
O2' C2' C1' O4' 289.6 288.3
O4' C1' C2' H2' 161.7 158.5
C2' C1' O4' N1 122.7 119.0
C2' C1' O4' H1' 244.4 241.0
N1 C1' O4' H1' 121.7 122.0
O4' C1' N1 C2 199.5 193.0
O4' C1' N1 C6 14.6 13.1
O3' C3' C4' C6' 61.0 65.0
C4' C3' O3' C2' 259.7 256.2
C4' C3' O3' H3' 129.8 128.0
C2' C3' O3' H3' 230.1 231.9
O3' C3' C2' O2' 298.5 299.0
O3' C3' C2' C1' 185.2 192.9
O3' C3' C2' H2' 63.9 66.2
C2' C3' C4' C6' 305.8 308.9
C4' C3' C2' O3' 117.5 116.1
C4' C3' C2' H3' 246.8 244.0
O4' C1' C2' C3' 39.5 32.1
O3' C3' C2' H3' 129.4 127.9
C2' C3' O3' HA 280.3 298.6
O2' C2' C3' C1' 113.2 106.0
O2' C2' C3' H2' 234.6 232.8
C3' C2' O2' C6' 324.1 322.2
C1' C2' C3' H2' 121.4 126.8
C3' C2' C1' N1 161.7 151.0
C3' C2' C1' H1' 285.0 273.0
H3' C3' C4' C6' 191.1 192.8
C4' C3' H3' O3' 228.2 231.9
C4' C3' H3' C2' 98.4 103.8
O3' C3' H3' C2' 230.2 231.8
H3' C3' O3' HA 50.2 66.7
H3' C3' C2' O2' 169.1 171.1
H3' C3' C2' C1' 55.9 65.1
H3' C3' C2' H2' 294.5 298.3
HA O3' C3' C2' 280.3 298.6
HA O3' C3' H3' 50.2 66.7
C4' C6' O2' C2' 358.3 3.4
O4' C1' C2' O2' 289.6 288.3
O2' C2' C3' H3' 169.1 171.1
C3' C2' O2' C1' 253.9 257.8
C3' C2' O2' H2' 126.1 127.4
C1' C2' O2' H2' 232.1 229.7
O2' C2' C1' N1 51.9 47.2
O2' C2' C1' H1' 175.2 169.2
C2' O2' C6' H9'1 239.0 244.3
C2' O2' C6' H9'2 115.9 122.3
O4' C1' C2' N1 237.8 241.1
O4' C1' C2' H1' 114.5 119.1
C1' C2' C3' H3' 55.9 65.1
C3' C2' C1' O2' 109.8 103.8
C3' C2' C1' H2' 237.8 233.6
O2' C2' C1' H2' 127.9 129.8
C1' C2' O2' C6' 70.2 64.4
N1 C1' C2' H1' 236.7 238.0
C2' C1' N1 C2 84.0 77.1
C2' C1' N1 C6 259.0 257.1
H2' C2' C3' H3' 294.5 298.3
C3' C2' H2' O2' 239.1 240.7
C3' C2' H2' C1' 113.4 117.2
O2' C2' H2' C1' 234.3 236.4
H2' C2' O2' C6' 198.0 194.7
H2' C2' C1' N1 283.9 277.4
H2' C2' C1' H1' 47.3 39.4
C4' C6' O2' H9'1 119.3 119.0
C4' C6' O2' H9'2 242.4 241.1
C6' O2' C2' C1' 70.2 64.4
C6' O2' C2' H2' 198.0 194.7
H9'1 C6' O2' H9'2 123.1 122.1
O4' C1' N1 C2' 115.6 116.0
O4' C1' N1 H1' 239.0 238.0
N1 C1' C2' H2' 283.9 277.4
C2' C1' N1 H1' 123.4 122.0
C2 N1 C1' C6 185.0 179.9
C1' N1 C2 O2 355.3 0.1
C1' N1 C2 N3 174.9 180.0
C1' N1 C6 C5 186.4 180.0
C1' N1 C6 H6 5.0 359.9
O4' C1' H1' C2' 249.8 244.0
O4' C1' H1' N1 124.0 122.0
H1' C1' C2' H2' 47.3 39.4
C2' C1' H1' N1 234.1 238.0
H1' C1' N1 C2 320.5 315.1
H1' C1' N1 C6 135.5 135.1
C4' C6' H9'1 O2' 246.0 244.1
C4' C6' H9'1 H9'2 123.2 122.0
O2' C6' H9'1 H9'2 237.2 238.0
C4' C6' H9'2 O2' 112.6 115.9
C4' C6' H9'2 H9'1 236.3 237.9
O2' C6' H9'2 H9'1 123.7 122.1
C2 N1 C1' H1' 320.5 315.1
C1' N1 C2 C6 175.0 180.1
C2 N1 C6 C5 1.3 0.1
C2 N1 C6 H6 179.9 180.0
O2 C2 N1 N3 180.4 180.1
N1 C2 N3 C4 359.7 359.7
N1 C2 N3 H3 179.0 180.1
C6 N1 C1' H1' 135.5 135.1
C1' N1 C6 C2 185.1 179.9
C6 N1 C2 O2 180.3 180.0
C6 N1 C2 N3 359.9 359.9
C4 C5 C6 N1 357.9 0.2
C5M C5 C6 N1 176.9 180.0
C5 C6 N1 H6 181.4 180.1
O2 C2 N1 C6 180.3 180.0
N1 C2 O2 N3 179.6 179.9
O2 C2 N3 C4 179.4 179.7
O2 C2 N3 H3 358.6 0.0
N3 C2 N1 C6 359.9 359.9
N1 C2 N3 O2 180.4 180.1
C4 N3 C2 H3 180.8 179.6
C2 N3 C4 O4 179.5 180.0
C2 N3 C4 C5 359.5 0.5
C2 N3 C4 H3 179.2 180.4
O4 C4 N3 C5 180.0 179.4
N3 C4 C5 C5M 182.7 179.7
N3 C4 C5 C6 1.6 359.5
C2 N3 H3 C4 180.7 179.6
H3 N3 C4 O4 0.3 359.6
H3 N3 C4 C5 180.3 180.2
O4 C4 N3 H3 0.3 359.6
N3 C4 O4 C5 180.0 180.6
O4 C4 C5 C5M 2.7 0.3
O4 C4 C5 C6 181.6 180.0
N1 C6 C5 C4 357.9 0.2
C5 C4 N3 H3 180.3 180.2
N3 C4 C5 O4 180.0 179.4
C5M C5 C4 C6 181.0 180.3
C4 C5 C5M H71 40.3 359.7
C4 C5 C5M H72 159.3 119.7
C4 C5 C5M H73 279.3 239.7
C4 C5 C6 H6 179.3 180.3
N1 C6 C5 C5M 176.9 180.0
C4 C5 C5M C6 179.0 179.7
C5M C5 C6 H6 358.3 0.1
H71 C5M C5 H72 240.9 240.0
H71 C5M C5 H73 121.0 120.0
H72 C5M C5 H73 240.0 240.0
N1 C6 C5 H6 178.6 179.9
C4 C5 C6 C5M 181.0 180.3
C6 C5 C5M H71 221.3 180.0
C6 C5 C5M H72 340.4 300.0
C6 C5 C5M H73 100.3 60.0
H71 C5M C5 C6 221.3 180.0
C5 C5M H71 H72 120.4 120.0
C5 C5M H71 H73 239.1 240.0
H72 C5M H71 H73 118.8 120.0
H72 C5M C5 C6 340.4 300.0
C5 C5M H72 H71 239.8 240.0
C5 C5M H72 H73 120.4 120.0
H71 C5M H72 H73 240.6 240.0
H73 C5M C5 C6 100.3 60.0
C5 C5M H73 H71 121.0 120.0
C5 C5M H73 H72 239.2 240.0
H71 C5M H73 H72 118.2 119.9
N1 C6 H6 C5 181.4 180.1