PDB Chemical Component ASU

Ideal Model

Chemical Description

Name 4'-THIO-2'4'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE
Formula C5 H11 O6 P S
Formal charge 0
Molecular weight 230.176 g/mol
Component type DNA LINKING

Chemical features

Atom count 24
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3
Bond count 24
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2-deoxy-5-O-phosphono-4-thio-alpha-D-erythro-pentofuranose
Systematic name (OpenEye OEToolkits) [(2R,3S,5S)-3,5-dihydroxythiolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@@H]1C[C@H](O)[C@@H](CO[P](O)(O)=O)S1
SMILES (CACTVS) O[CH]1C[CH](O)[CH](CO[P](O)(O)=O)S1
Stereo SMILES (OpenEye) C1[C@@H]([C@H](S[C@@H]1O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C5H11O6PS/c6-3-1-5(7)13-4(3)2-11-12(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5-/m0/s1
InChIKey descriptor LISKFBQBDFDUEX-LMVFSUKVSA-N

Status Information

Last modified 2011-06-04
Created 2000-03-20
Release status REL
Model PDB code 1EMJ
Processing site RCSB