PDB Chemical Component ASU
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ASU
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| P |
OP1 |
1.479 |
1.480 |
| P |
OP2 |
1.481 |
1.610 |
| P |
OP3 |
1.611 |
1.609 |
| P |
O5' |
1.590 |
1.609 |
| OP2 |
HOP2 |
0.950 |
0.967 |
| OP3 |
HOP3 |
0.950 |
0.966 |
| O5' |
C5' |
1.420 |
1.428 |
| S4' |
C4' |
1.815 |
1.839 |
| S4' |
C1' |
1.783 |
1.842 |
| O1' |
C1' |
1.431 |
1.429 |
| O1' |
HO'1 |
0.951 |
0.967 |
| C2' |
C1' |
1.527 |
1.555 |
| C2' |
C3' |
1.538 |
1.538 |
| C2' |
H2' |
1.116 |
1.089 |
| C2' |
H2'' |
1.115 |
1.090 |
| C5' |
C4' |
1.510 |
1.529 |
| C5' |
H5' |
1.115 |
1.091 |
| C5' |
H5'' |
1.115 |
1.090 |
| C4' |
C3' |
1.536 |
1.548 |
| C4' |
H4' |
1.115 |
1.090 |
| C1' |
H1' |
1.115 |
1.090 |
| C3' |
O3' |
1.425 |
1.429 |
| C3' |
H3' |
1.115 |
1.090 |
| O3' |
HO'3 |
0.949 |
0.966 |
Bond Angles for ASU
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP1 |
P |
OP2 |
119.7 |
109.5 |
| OP1 |
P |
OP3 |
108.4 |
109.4 |
| OP1 |
P |
O5' |
106.4 |
109.4 |
| OP2 |
P |
OP3 |
107.9 |
109.5 |
| OP2 |
P |
O5' |
109.0 |
109.5 |
| P |
OP2 |
HOP2 |
119.8 |
106.8 |
| OP3 |
P |
O5' |
104.4 |
109.5 |
| P |
OP3 |
HOP3 |
108.4 |
106.8 |
| P |
O5' |
C5' |
121.1 |
106.9 |
| O5' |
C5' |
C4' |
109.8 |
109.5 |
| O5' |
C5' |
H5' |
112.1 |
109.4 |
| O5' |
C5' |
H5'' |
112.1 |
109.5 |
| C4' |
S4' |
C1' |
98.0 |
99.5 |
| S4' |
C4' |
C5' |
111.5 |
110.9 |
| S4' |
C4' |
C3' |
105.4 |
102.7 |
| S4' |
C4' |
H4' |
112.9 |
110.8 |
| S4' |
C1' |
O1' |
105.8 |
111.2 |
| S4' |
C1' |
C2' |
103.2 |
100.6 |
| S4' |
C1' |
H1' |
116.4 |
111.2 |
| C1' |
O1' |
HO'1 |
105.8 |
106.7 |
| O1' |
C1' |
C2' |
111.6 |
111.1 |
| O1' |
C1' |
H1' |
108.6 |
111.1 |
| C1' |
C2' |
C3' |
108.6 |
108.1 |
| C1' |
C2' |
H2' |
112.6 |
109.8 |
| C1' |
C2' |
H2'' |
112.5 |
109.7 |
| C2' |
C1' |
H1' |
111.0 |
111.2 |
| C3' |
C2' |
H2' |
112.5 |
109.8 |
| C3' |
C2' |
H2'' |
112.5 |
109.7 |
| C2' |
C3' |
C4' |
108.0 |
109.9 |
| C2' |
C3' |
O3' |
112.7 |
109.4 |
| C2' |
C3' |
H3' |
108.3 |
109.4 |
| H2' |
C2' |
H2'' |
97.9 |
109.7 |
| C4' |
C5' |
H5' |
112.1 |
109.4 |
| C4' |
C5' |
H5'' |
112.1 |
109.5 |
| C5' |
C4' |
C3' |
114.7 |
110.8 |
| C5' |
C4' |
H4' |
103.2 |
110.7 |
| H5' |
C5' |
H5'' |
98.3 |
109.5 |
| C3' |
C4' |
H4' |
109.5 |
110.7 |
| C4' |
C3' |
O3' |
109.4 |
109.4 |
| C4' |
C3' |
H3' |
111.6 |
109.4 |
| O3' |
C3' |
H3' |
106.8 |
109.4 |
| C3' |
O3' |
HO'3 |
112.7 |
106.9 |
Torsion Angles for ASU
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| OP2 |
P |
OP1 |
OP3 |
235.7 |
120.0 |
| OP2 |
P |
OP1 |
O5' |
123.9 |
239.9 |
| OP1 |
P |
OP2 |
HOP2 |
180.0 |
300.0 |
| OP3 |
P |
OP1 |
O5' |
248.2 |
120.0 |
| OP1 |
P |
OP3 |
HOP3 |
180.0 |
180.0 |
| OP1 |
P |
O5' |
C5' |
180.5 |
59.9 |
| OP1 |
P |
OP2 |
OP3 |
124.6 |
240.0 |
| OP1 |
P |
OP2 |
O5' |
237.3 |
120.0 |
| OP3 |
P |
OP2 |
O5' |
112.8 |
240.0 |
| OP2 |
P |
OP3 |
HOP3 |
311.1 |
60.0 |
| OP2 |
P |
O5' |
C5' |
50.2 |
179.9 |
| OP1 |
P |
OP3 |
OP2 |
228.9 |
120.0 |
| OP1 |
P |
OP3 |
O5' |
113.1 |
240.1 |
| OP2 |
P |
OP3 |
O5' |
244.2 |
120.1 |
| OP3 |
P |
OP2 |
HOP2 |
55.5 |
59.9 |
| OP3 |
P |
O5' |
C5' |
295.1 |
300.0 |
| OP1 |
P |
O5' |
OP2 |
130.4 |
240.0 |
| OP1 |
P |
O5' |
OP3 |
245.4 |
119.9 |
| OP2 |
P |
O5' |
OP3 |
115.1 |
240.0 |
| O5' |
P |
OP2 |
HOP2 |
302.7 |
180.0 |
| O5' |
P |
OP3 |
HOP3 |
66.9 |
300.0 |
| P |
O5' |
C5' |
C4' |
156.7 |
180.0 |
| P |
O5' |
C5' |
H5' |
282.0 |
60.0 |
| P |
O5' |
C5' |
H5'' |
31.5 |
300.0 |
| HOP2 |
OP2 |
P |
OP3 |
55.5 |
59.9 |
| HOP2 |
OP2 |
P |
O5' |
302.7 |
180.0 |
| HOP3 |
OP3 |
P |
O5' |
66.9 |
300.0 |
| S4' |
C4' |
C5' |
O5' |
57.7 |
66.7 |
| C4' |
C5' |
O5' |
H5' |
234.7 |
119.9 |
| C4' |
C5' |
O5' |
H5'' |
125.3 |
240.0 |
| O5' |
C5' |
C4' |
C3' |
177.3 |
180.1 |
| O5' |
C5' |
C4' |
H4' |
296.3 |
303.3 |
| H5' |
C5' |
O5' |
H5'' |
250.6 |
120.0 |
| O5' |
C5' |
C4' |
S4' |
57.7 |
66.7 |
| C4' |
S4' |
C1' |
O1' |
95.3 |
139.3 |
| C4' |
S4' |
C1' |
C2' |
337.9 |
21.6 |
| C4' |
S4' |
C1' |
H1' |
216.1 |
263.7 |
| C2' |
C3' |
C4' |
S4' |
24.5 |
331.9 |
| S4' |
C4' |
C5' |
H5' |
292.4 |
186.6 |
| S4' |
C4' |
C5' |
H5'' |
183.0 |
306.7 |
| C5' |
C4' |
S4' |
C3' |
125.0 |
118.4 |
| C5' |
C4' |
S4' |
H4' |
244.4 |
236.6 |
| C3' |
C4' |
S4' |
H4' |
119.4 |
118.3 |
| S4' |
C4' |
C3' |
O3' |
261.5 |
211.8 |
| S4' |
C4' |
C3' |
H3' |
143.4 |
92.0 |
| C1' |
S4' |
C4' |
C5' |
123.8 |
121.3 |
| C1' |
S4' |
C4' |
C3' |
358.8 |
3.0 |
| C1' |
S4' |
C4' |
H4' |
239.3 |
244.7 |
| S4' |
C1' |
O1' |
HO'1 |
180.0 |
65.1 |
| O1' |
C1' |
S4' |
C2' |
117.4 |
117.8 |
| O1' |
C1' |
S4' |
H1' |
239.2 |
235.6 |
| S4' |
C1' |
C2' |
C3' |
39.8 |
319.3 |
| S4' |
C1' |
C2' |
H2' |
165.1 |
79.0 |
| S4' |
C1' |
C2' |
H2'' |
274.6 |
199.6 |
| C2' |
C1' |
S4' |
H1' |
121.8 |
117.8 |
| S4' |
C1' |
O1' |
C2' |
248.4 |
248.9 |
| S4' |
C1' |
O1' |
H1' |
125.7 |
124.5 |
| O1' |
C1' |
C2' |
C3' |
286.6 |
201.4 |
| O1' |
C1' |
C2' |
H2' |
51.9 |
321.2 |
| O1' |
C1' |
C2' |
H2'' |
161.4 |
81.8 |
| C2' |
C1' |
O1' |
H1' |
237.3 |
235.6 |
| HO'1 |
O1' |
C1' |
C2' |
291.6 |
176.3 |
| HO'1 |
O1' |
C1' |
H1' |
54.3 |
300.6 |
| S4' |
C1' |
C2' |
O1' |
113.2 |
117.8 |
| S4' |
C1' |
C2' |
H1' |
234.6 |
242.2 |
| C2' |
C1' |
O1' |
HO'1 |
291.6 |
176.3 |
| O1' |
C1' |
C2' |
H1' |
121.4 |
124.3 |
| C3' |
C2' |
C1' |
H2' |
234.7 |
240.2 |
| C3' |
C2' |
C1' |
H2'' |
125.3 |
119.6 |
| C1' |
C2' |
C3' |
C4' |
317.0 |
47.6 |
| C1' |
C2' |
C3' |
O3' |
78.0 |
167.7 |
| C1' |
C2' |
C3' |
H3' |
196.0 |
287.5 |
| H2' |
C2' |
C1' |
H2'' |
250.6 |
239.4 |
| S4' |
C4' |
C3' |
C2' |
24.5 |
331.9 |
| C1' |
C2' |
C3' |
H2' |
125.3 |
119.8 |
| C1' |
C2' |
C3' |
H2'' |
234.7 |
240.4 |
| C3' |
C2' |
C1' |
H1' |
165.3 |
77.1 |
| H2' |
C2' |
C3' |
H2'' |
109.4 |
120.6 |
| C5' |
C4' |
C3' |
C2' |
261.6 |
213.4 |
| C2' |
C3' |
C4' |
H4' |
146.2 |
90.2 |
| C4' |
C3' |
C2' |
O3' |
239.0 |
239.9 |
| C4' |
C3' |
C2' |
H3' |
121.0 |
120.1 |
| O3' |
C3' |
C2' |
H3' |
242.1 |
240.2 |
| C2' |
C3' |
O3' |
HO'3 |
180.0 |
61.4 |
| C1' |
C2' |
H2' |
C3' |
236.9 |
241.2 |
| C1' |
C2' |
H2' |
H2'' |
118.5 |
120.6 |
| H2' |
C2' |
C1' |
H1' |
290.6 |
196.9 |
| C3' |
C2' |
H2' |
H2'' |
241.6 |
239.4 |
| H2' |
C2' |
C3' |
C4' |
191.7 |
287.8 |
| H2' |
C2' |
C3' |
O3' |
312.7 |
47.9 |
| H2' |
C2' |
C3' |
H3' |
70.7 |
167.7 |
| C1' |
C2' |
H2'' |
C3' |
123.1 |
118.7 |
| C1' |
C2' |
H2'' |
H2' |
241.5 |
239.3 |
| H2'' |
C2' |
C1' |
H1' |
40.0 |
317.5 |
| C3' |
C2' |
H2'' |
H2' |
118.4 |
120.7 |
| H2'' |
C2' |
C3' |
C4' |
82.3 |
167.2 |
| H2'' |
C2' |
C3' |
O3' |
203.3 |
287.3 |
| H2'' |
C2' |
C3' |
H3' |
321.2 |
47.1 |
| O5' |
C5' |
C4' |
H5' |
125.3 |
240.1 |
| O5' |
C5' |
C4' |
H5'' |
234.7 |
120.0 |
| C5' |
C4' |
S4' |
C1' |
123.8 |
121.3 |
| S4' |
C4' |
C5' |
C3' |
240.4 |
246.7 |
| S4' |
C4' |
C5' |
H4' |
121.4 |
123.4 |
| C2' |
C3' |
C4' |
C5' |
261.6 |
213.4 |
| H5' |
C5' |
C4' |
H5'' |
109.4 |
240.0 |
| C3' |
C4' |
C5' |
H4' |
241.0 |
236.8 |
| C5' |
C4' |
C3' |
O3' |
138.5 |
93.3 |
| C5' |
C4' |
C3' |
H3' |
20.5 |
333.5 |
| O5' |
C5' |
H5' |
C4' |
236.0 |
120.0 |
| O5' |
C5' |
H5' |
H5'' |
118.0 |
240.0 |
| C4' |
C5' |
H5' |
H5'' |
242.0 |
120.0 |
| H5' |
C5' |
C4' |
C3' |
52.0 |
300.0 |
| H5' |
C5' |
C4' |
H4' |
171.0 |
63.2 |
| O5' |
C5' |
H5'' |
C4' |
124.0 |
239.9 |
| O5' |
C5' |
H5'' |
H5' |
242.0 |
119.9 |
| C4' |
C5' |
H5'' |
H5' |
118.0 |
240.0 |
| H5'' |
C5' |
C4' |
C3' |
302.6 |
60.0 |
| H5'' |
C5' |
C4' |
H4' |
61.6 |
183.3 |
| C3' |
C4' |
S4' |
C1' |
358.8 |
3.0 |
| S4' |
C4' |
C3' |
C5' |
122.9 |
118.5 |
| S4' |
C4' |
C3' |
H4' |
238.3 |
241.7 |
| C4' |
C3' |
C2' |
H2' |
191.7 |
287.8 |
| C4' |
C3' |
C2' |
H2'' |
82.3 |
167.2 |
| C2' |
C3' |
C4' |
O3' |
123.0 |
120.1 |
| C2' |
C3' |
C4' |
H3' |
241.1 |
239.9 |
| C3' |
C4' |
C5' |
H5' |
52.0 |
300.0 |
| C3' |
C4' |
C5' |
H5'' |
302.6 |
60.0 |
| C5' |
C4' |
C3' |
H4' |
115.4 |
123.2 |
| O3' |
C3' |
C4' |
H3' |
118.0 |
119.8 |
| C4' |
C3' |
O3' |
HO'3 |
300.2 |
181.9 |
| H4' |
C4' |
S4' |
C1' |
239.3 |
244.7 |
| S4' |
C4' |
H4' |
C5' |
239.6 |
236.5 |
| S4' |
C4' |
H4' |
C3' |
117.0 |
113.2 |
| H4' |
C4' |
C5' |
H5' |
171.0 |
63.2 |
| H4' |
C4' |
C5' |
H5'' |
61.6 |
183.3 |
| C5' |
C4' |
H4' |
C3' |
237.5 |
236.7 |
| H4' |
C4' |
C3' |
O3' |
23.2 |
330.1 |
| H4' |
C4' |
C3' |
H3' |
265.1 |
210.3 |
| S4' |
C1' |
H1' |
O1' |
240.8 |
235.5 |
| S4' |
C1' |
H1' |
C2' |
117.7 |
111.2 |
| H1' |
C1' |
O1' |
HO'1 |
54.3 |
300.6 |
| O1' |
C1' |
H1' |
C2' |
236.9 |
235.7 |
| H1' |
C1' |
C2' |
C3' |
165.3 |
77.1 |
| H1' |
C1' |
C2' |
H2' |
290.6 |
196.9 |
| H1' |
C1' |
C2' |
H2'' |
40.0 |
317.5 |
| O3' |
C3' |
C2' |
H2' |
312.7 |
47.9 |
| O3' |
C3' |
C2' |
H2'' |
203.3 |
287.3 |
| C2' |
C3' |
O3' |
C4' |
239.8 |
239.6 |
| C2' |
C3' |
O3' |
H3' |
118.8 |
119.8 |
| O3' |
C3' |
C4' |
H4' |
23.2 |
330.1 |
| C4' |
C3' |
O3' |
H3' |
239.0 |
240.2 |
| H3' |
C3' |
C2' |
H2' |
70.7 |
167.7 |
| H3' |
C3' |
C2' |
H2'' |
321.2 |
47.1 |
| C2' |
C3' |
H3' |
C4' |
118.8 |
120.4 |
| C2' |
C3' |
H3' |
O3' |
238.4 |
240.2 |
| H3' |
C3' |
C4' |
H4' |
265.1 |
210.3 |
| C4' |
C3' |
H3' |
O3' |
119.6 |
119.8 |
| H3' |
C3' |
O3' |
HO'3 |
61.2 |
301.6 |
| HO'3 |
O3' |
C3' |
H3' |
61.2 |
301.6 |