PDB Chemical Component AS9
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AS9
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAA |
PAM |
1.794 |
1.793 |
| CAA |
HAA1 |
1.100 |
1.093 |
| CAA |
HAA2 |
1.101 |
1.094 |
| CAA |
HAA3 |
1.100 |
1.092 |
| PAM |
OAG |
1.577 |
1.504 |
| PAM |
N |
1.617 |
1.658 |
| PAM |
OAD |
1.471 |
1.623 |
| OAD |
HOAD |
0.951 |
0.981 |
| N |
CA |
1.484 |
1.444 |
| N |
H |
1.000 |
1.023 |
| CA |
C |
1.575 |
1.519 |
| CA |
CB |
1.566 |
1.531 |
| CA |
HA |
1.100 |
1.095 |
| C |
O |
1.262 |
1.225 |
| C |
OXT |
1.251 |
1.355 |
| OXT |
HXT |
0.951 |
0.981 |
| CB |
CG |
1.559 |
1.514 |
| CB |
HB2 |
1.100 |
1.096 |
| CB |
HB3 |
1.100 |
1.097 |
| CG |
OD2 |
1.258 |
1.223 |
| CG |
OD1 |
1.258 |
1.359 |
| OD1 |
HD1 |
0.950 |
0.982 |
Bond Angles for AS9
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| PAM |
CAA |
HAA1 |
109.5 |
110.1 |
| PAM |
CAA |
HAA2 |
109.5 |
110.1 |
| PAM |
CAA |
HAA3 |
109.5 |
110.1 |
| CAA |
PAM |
OAG |
108.1 |
111.2 |
| CAA |
PAM |
N |
107.3 |
106.1 |
| CAA |
PAM |
OAD |
109.3 |
101.0 |
| HAA1 |
CAA |
HAA2 |
109.5 |
108.8 |
| HAA1 |
CAA |
HAA3 |
109.5 |
108.8 |
| HAA2 |
CAA |
HAA3 |
109.5 |
108.9 |
| OAG |
PAM |
N |
103.9 |
117.8 |
| OAG |
PAM |
OAD |
110.5 |
112.2 |
| OAD |
PAM |
N |
117.3 |
107.0 |
| PAM |
N |
CA |
114.1 |
119.2 |
| PAM |
N |
H |
108.0 |
115.3 |
| PAM |
OAD |
HOAD |
109.5 |
118.7 |
| CA |
N |
H |
108.0 |
109.0 |
| N |
CA |
C |
109.5 |
111.3 |
| N |
CA |
CB |
108.2 |
111.1 |
| N |
CA |
HA |
111.9 |
105.9 |
| C |
CA |
CB |
114.0 |
110.2 |
| C |
CA |
HA |
105.9 |
106.8 |
| CA |
C |
O |
119.7 |
123.8 |
| CA |
C |
OXT |
116.9 |
113.4 |
| CB |
CA |
HA |
107.3 |
111.5 |
| CA |
CB |
CG |
117.2 |
112.9 |
| CA |
CB |
HB2 |
107.0 |
110.1 |
| CA |
CB |
HB3 |
105.2 |
110.1 |
| OXT |
C |
O |
123.4 |
122.8 |
| C |
OXT |
HXT |
109.5 |
111.9 |
| CG |
CB |
HB2 |
107.0 |
106.8 |
| CG |
CB |
HB3 |
105.2 |
108.4 |
| CB |
CG |
OD2 |
118.2 |
125.6 |
| CB |
CG |
OD1 |
116.5 |
111.4 |
| HB2 |
CB |
HB3 |
115.7 |
108.4 |
| OD2 |
CG |
OD1 |
125.3 |
123.0 |
| CG |
OD1 |
HD1 |
109.5 |
115.0 |
Torsion Angles for AS9
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| HAA1 |
CAA |
PAM |
HAA2 |
240.0 |
240.0 |
| HAA1 |
CAA |
PAM |
HAA3 |
120.0 |
120.0 |
| HAA2 |
CAA |
PAM |
HAA3 |
240.0 |
239.9 |
| OAG |
PAM |
CAA |
N |
111.5 |
129.3 |
| OAG |
PAM |
CAA |
OAD |
239.7 |
240.7 |
| OAD |
PAM |
CAA |
N |
231.8 |
248.5 |
| CAA |
PAM |
N |
CA |
186.7 |
192.7 |
| CAA |
PAM |
N |
H |
306.7 |
60.1 |
| CAA |
PAM |
OAD |
HOAD |
346.2 |
177.1 |
| PAM |
CAA |
HAA1 |
HAA2 |
120.0 |
120.7 |
| PAM |
CAA |
HAA1 |
HAA3 |
240.0 |
239.3 |
| HAA1 |
CAA |
PAM |
OAG |
53.1 |
117.9 |
| HAA1 |
CAA |
PAM |
N |
301.6 |
348.6 |
| HAA1 |
CAA |
PAM |
OAD |
173.4 |
237.2 |
| HAA2 |
CAA |
HAA1 |
HAA3 |
120.0 |
118.5 |
| PAM |
CAA |
HAA2 |
HAA1 |
240.0 |
239.3 |
| PAM |
CAA |
HAA2 |
HAA3 |
120.0 |
120.8 |
| HAA2 |
CAA |
PAM |
OAG |
173.1 |
237.9 |
| HAA2 |
CAA |
PAM |
N |
61.6 |
108.6 |
| HAA2 |
CAA |
PAM |
OAD |
293.4 |
357.1 |
| HAA1 |
CAA |
HAA2 |
HAA3 |
240.0 |
241.5 |
| PAM |
CAA |
HAA3 |
HAA1 |
120.0 |
120.7 |
| PAM |
CAA |
HAA3 |
HAA2 |
240.0 |
239.2 |
| HAA3 |
CAA |
PAM |
OAG |
293.1 |
357.9 |
| HAA3 |
CAA |
PAM |
N |
181.6 |
228.7 |
| HAA3 |
CAA |
PAM |
OAD |
53.4 |
117.2 |
| HAA1 |
CAA |
HAA3 |
HAA2 |
120.0 |
118.5 |
| OAG |
PAM |
CAA |
HAA1 |
53.1 |
117.9 |
| OAG |
PAM |
CAA |
HAA2 |
173.1 |
237.9 |
| OAG |
PAM |
CAA |
HAA3 |
293.1 |
357.9 |
| CAA |
PAM |
OAG |
N |
246.2 |
237.3 |
| CAA |
PAM |
OAG |
OAD |
119.5 |
112.3 |
| OAD |
PAM |
OAG |
N |
126.7 |
124.9 |
| OAG |
PAM |
N |
CA |
72.4 |
67.5 |
| OAG |
PAM |
N |
H |
192.4 |
294.8 |
| OAG |
PAM |
OAD |
HOAD |
105.0 |
295.6 |
| N |
PAM |
CAA |
HAA1 |
301.6 |
348.6 |
| N |
PAM |
CAA |
HAA2 |
61.6 |
108.6 |
| N |
PAM |
CAA |
HAA3 |
181.6 |
228.7 |
| CAA |
PAM |
N |
OAG |
114.3 |
125.3 |
| CAA |
PAM |
N |
OAD |
236.6 |
252.7 |
| OAG |
PAM |
N |
OAD |
122.3 |
127.5 |
| N |
PAM |
OAD |
HOAD |
223.8 |
66.3 |
| CA |
N |
PAM |
H |
240.0 |
132.7 |
| PAM |
N |
CA |
C |
233.3 |
274.4 |
| PAM |
N |
CA |
CB |
108.5 |
151.3 |
| PAM |
N |
CA |
HA |
350.4 |
30.0 |
| OAD |
PAM |
CAA |
HAA1 |
173.4 |
237.2 |
| OAD |
PAM |
CAA |
HAA2 |
293.4 |
357.1 |
| OAD |
PAM |
CAA |
HAA3 |
53.4 |
117.2 |
| CAA |
PAM |
OAD |
OAG |
241.2 |
241.5 |
| CAA |
PAM |
OAD |
N |
122.4 |
110.8 |
| OAG |
PAM |
OAD |
N |
241.2 |
229.3 |
| OAD |
PAM |
N |
CA |
310.1 |
300.0 |
| OAD |
PAM |
N |
H |
70.2 |
167.3 |
| HOAD |
OAD |
PAM |
N |
223.8 |
66.3 |
| PAM |
N |
CA |
H |
120.0 |
224.7 |
| C |
CA |
N |
CB |
124.8 |
123.1 |
| C |
CA |
N |
HA |
242.9 |
244.3 |
| N |
CA |
C |
O |
334.5 |
355.1 |
| N |
CA |
C |
OXT |
153.6 |
175.4 |
| CB |
CA |
N |
HA |
118.1 |
121.2 |
| N |
CA |
CB |
CG |
197.3 |
302.1 |
| N |
CA |
CB |
HB2 |
317.3 |
182.9 |
| N |
CA |
CB |
HB3 |
80.9 |
63.5 |
| PAM |
N |
H |
CA |
236.2 |
137.2 |
| H |
N |
CA |
C |
113.3 |
49.7 |
| H |
N |
CA |
CB |
348.5 |
286.6 |
| H |
N |
CA |
HA |
230.4 |
165.3 |
| C |
CA |
N |
H |
113.3 |
49.7 |
| N |
CA |
C |
CB |
238.6 |
236.4 |
| N |
CA |
C |
HA |
120.9 |
115.1 |
| CB |
CA |
C |
HA |
242.3 |
238.8 |
| C |
CA |
CB |
CG |
75.2 |
178.4 |
| C |
CA |
CB |
HB2 |
195.2 |
59.1 |
| C |
CA |
CB |
HB3 |
318.8 |
299.7 |
| OXT |
C |
CA |
O |
179.0 |
180.3 |
| CA |
C |
OXT |
HXT |
181.0 |
179.8 |
| CB |
CA |
N |
H |
348.5 |
286.6 |
| N |
CA |
CB |
C |
122.1 |
123.8 |
| N |
CA |
CB |
HA |
239.0 |
242.1 |
| C |
CA |
CB |
HA |
116.9 |
118.4 |
| CB |
CA |
C |
O |
95.9 |
118.7 |
| CB |
CA |
C |
OXT |
274.9 |
299.0 |
| CG |
CB |
CA |
HB2 |
240.0 |
119.2 |
| CG |
CB |
CA |
HB3 |
116.4 |
238.7 |
| CA |
CB |
CG |
OD2 |
68.8 |
329.0 |
| CA |
CB |
CG |
OD1 |
248.0 |
149.0 |
| HB2 |
CB |
CA |
HB3 |
236.4 |
119.4 |
| HA |
CA |
N |
H |
230.4 |
165.3 |
| N |
CA |
HA |
C |
240.7 |
241.3 |
| N |
CA |
HA |
CB |
118.6 |
120.9 |
| C |
CA |
HA |
CB |
237.9 |
239.6 |
| HA |
CA |
C |
O |
213.7 |
240.0 |
| HA |
CA |
C |
OXT |
32.7 |
60.2 |
| HA |
CA |
CB |
CG |
318.3 |
60.0 |
| HA |
CA |
CB |
HB2 |
78.3 |
300.8 |
| HA |
CA |
CB |
HB3 |
201.8 |
181.3 |
| O |
C |
CA |
CB |
95.9 |
118.7 |
| O |
C |
CA |
HA |
213.7 |
240.0 |
| CA |
C |
O |
OXT |
179.0 |
180.3 |
| O |
C |
OXT |
HXT |
0.0 |
0.0 |
| OXT |
C |
CA |
CB |
274.9 |
299.0 |
| OXT |
C |
CA |
HA |
32.7 |
60.2 |
| CA |
C |
OXT |
O |
181.0 |
179.8 |
| HXT |
OXT |
C |
O |
0.0 |
0.0 |
| CG |
CB |
CA |
HA |
318.3 |
60.0 |
| CA |
CB |
CG |
HB2 |
120.0 |
238.9 |
| CA |
CB |
CG |
HB3 |
243.6 |
122.3 |
| HB2 |
CB |
CG |
HB3 |
123.6 |
243.4 |
| OD2 |
CG |
CB |
OD1 |
180.9 |
179.9 |
| CB |
CG |
OD1 |
HD1 |
180.9 |
179.9 |
| HB2 |
CB |
CA |
HA |
78.3 |
300.8 |
| CA |
CB |
HB2 |
CG |
233.7 |
122.9 |
| CA |
CB |
HB2 |
HB3 |
116.8 |
239.5 |
| CG |
CB |
HB2 |
HB3 |
243.2 |
116.6 |
| HB2 |
CB |
CG |
OD2 |
308.8 |
90.1 |
| HB2 |
CB |
CG |
OD1 |
128.0 |
270.2 |
| HB3 |
CB |
CA |
HA |
201.8 |
181.3 |
| CA |
CB |
HB3 |
CG |
124.3 |
236.1 |
| CA |
CB |
HB3 |
HB2 |
242.2 |
120.5 |
| CG |
CB |
HB3 |
HB2 |
117.8 |
244.4 |
| HB3 |
CB |
CG |
OD2 |
185.2 |
206.7 |
| HB3 |
CB |
CG |
OD1 |
4.4 |
26.7 |
| OD2 |
CG |
CB |
HB2 |
308.8 |
90.1 |
| OD2 |
CG |
CB |
HB3 |
185.2 |
206.7 |
| CB |
CG |
OD2 |
OD1 |
179.1 |
180.1 |
| OD2 |
CG |
OD1 |
HD1 |
360.0 |
360.0 |
| OD1 |
CG |
CB |
HB2 |
128.0 |
270.2 |
| OD1 |
CG |
CB |
HB3 |
4.4 |
26.7 |
| CB |
CG |
OD1 |
OD2 |
180.9 |
179.9 |