PDB Chemical Component AS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for AS

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.480 1.610
P S2P 2.130 1.863
P OP3 1.623 1.609
P O5' 1.619 1.609
OP1 HOP1 0.950 0.966
OP3 HOP3 0.951 0.966
O5' C5' 1.419 1.428
C5' C4' 1.536 1.529
C5' H5' 1.090 1.090
C5' H5'' 1.090 1.090
C4' O4' 1.415 1.446
C4' C3' 1.532 1.550
C4' H4' 1.091 1.090
O4' C1' 1.411 1.437
C3' O3' 1.420 1.430
C3' C2' 1.523 1.547
C3' H3' 1.090 1.090
O3' HO3' 0.950 0.967
C2' C1' 1.523 1.540
C2' H2' 1.088 1.090
C2' H2'' 1.086 1.090
C1' N9 1.476 1.465
C1' H1' 1.093 1.090
N9 C8 1.373 1.362
N9 C4 1.373 1.373
C8 N7 1.303 1.301
C8 H8 1.078 1.080
N7 C5 1.389 1.355
C5 C6 1.409 1.405
C5 C4 1.372 1.404
C6 N6 1.337 1.384
C6 N1 1.347 1.329
N6 HN61 1.010 0.970
N6 HN62 1.011 0.970
N1 C2 1.330 1.320
C2 N3 1.330 1.316
C2 H2 1.080 1.081
N3 C4 1.362 1.329

Bond Angles for AS

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P S2P 120.3 109.4
OP1 P OP3 107.8 109.4
OP1 P O5' 108.0 109.5
P OP1 HOP1 120.3 106.8
S2P P OP3 107.5 109.5
S2P P O5' 106.4 109.5
OP3 P O5' 105.9 109.5
P OP3 HOP3 107.9 106.8
P O5' C5' 123.0 106.8
O5' C5' C4' 109.2 109.5
O5' C5' H5' 110.0 109.5
O5' C5' H5'' 110.2 109.5
C4' C5' H5' 109.2 109.4
C4' C5' H5'' 109.1 109.4
C5' C4' O4' 109.1 110.8
C5' C4' C3' 112.8 110.7
C5' C4' H4' 110.4 110.6
H5' C5' H5'' 109.1 109.4
O4' C4' C3' 106.1 103.6
O4' C4' H4' 108.9 110.5
C4' O4' C1' 108.6 106.8
C3' C4' H4' 109.4 110.6
C4' C3' O3' 112.7 110.9
C4' C3' C2' 103.1 102.1
C4' C3' H3' 109.1 110.9
O4' C1' C2' 106.8 107.5
O4' C1' N9 111.4 109.8
O4' C1' H1' 109.1 109.9
O3' C3' C2' 111.9 110.9
O3' C3' H3' 110.9 110.8
C3' O3' HO3' 112.6 106.7
C2' C3' H3' 108.9 111.0
C3' C2' C1' 105.7 104.2
C3' C2' H2' 108.0 110.5
C3' C2' H2'' 113.1 110.4
C1' C2' H2' 111.4 110.5
C1' C2' H2'' 107.9 110.5
C2' C1' N9 108.3 109.9
C2' C1' H1' 110.0 109.8
H2' C2' H2'' 110.6 110.5
N9 C1' H1' 111.2 109.9
C1' N9 C8 128.6 126.3
C1' N9 C4 125.6 126.3
C8 N9 C4 105.1 107.4
N9 C8 N7 114.3 110.0
N9 C8 H8 123.3 125.0
N9 C4 C5 106.2 106.0
N9 C4 N3 127.0 134.9
N7 C8 H8 122.3 125.0
C8 N7 C5 103.5 109.5
N7 C5 C6 132.9 134.7
N7 C5 C4 110.7 107.1
C6 C5 C4 116.3 118.2
C5 C6 N6 122.9 120.8
C5 C6 N1 118.3 118.4
C5 C4 N3 126.8 119.1
N6 C6 N1 118.9 120.8
C6 N6 HN61 119.4 120.0
C6 N6 HN62 120.0 120.0
C6 N1 C2 119.3 121.2
HN61 N6 HN62 120.6 120.0
N1 C2 N3 128.3 122.5
N1 C2 H2 115.7 118.7
N3 C2 H2 116.0 118.8
C2 N3 C4 111.1 120.6

Torsion Angles for AS

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
S2P P OP1 OP3 123.7 240.0
S2P P OP1 O5' 237.7 120.0
OP3 P OP1 O5' 114.0 239.9
OP1 P OP3 HOP3 180.0 60.1
OP1 P O5' C5' 36.1 180.0
OP1 P S2P OP3 236.1 119.9
OP1 P S2P O5' 123.1 240.0
S2P P OP1 HOP1 180.0 300.0
OP3 P S2P O5' 247.0 120.1
S2P P OP3 HOP3 48.8 180.0
S2P P O5' C5' 166.6 60.0
OP1 P OP3 S2P 131.2 240.1
OP1 P OP3 O5' 244.6 120.1
OP3 P OP1 HOP1 56.3 60.0
S2P P OP3 O5' 113.4 240.0
OP3 P O5' C5' 280.8 300.0
OP1 P O5' S2P 229.5 120.0
OP1 P O5' OP3 115.3 240.0
O5' P OP1 HOP1 302.3 180.0
S2P P O5' OP3 245.8 120.0
O5' P OP3 HOP3 295.4 300.0
P O5' C5' C4' 178.3 180.0
P O5' C5' H5' 58.4 60.0
P O5' C5' H5'' 298.1 300.0
HOP1 OP1 P S2P 180.0 300.0
HOP1 OP1 P OP3 56.3 60.0
HOP1 OP1 P O5' 302.3 180.0
HOP3 OP3 P O5' 295.4 300.0
C4' C5' O5' H5' 119.9 120.0
C4' C5' O5' H5'' 240.2 240.0
O5' C5' C4' O4' 306.2 65.7
O5' C5' C4' C3' 63.9 180.0
O5' C5' C4' H4' 186.6 302.9
H5' C5' O5' H5'' 120.4 120.0
O5' C5' C4' H5' 239.7 240.0
O5' C5' C4' H5'' 120.5 120.1
H5' C5' C4' H5'' 240.8 240.1
O4' C4' C5' C3' 242.3 245.7
O4' C4' C5' H4' 119.6 122.8
C5' C4' O4' C1' 154.5 158.5
C3' C4' C5' H4' 237.3 237.1
C5' C4' C3' O3' 94.7 86.1
C5' C4' C3' C2' 215.4 204.3
C5' C4' C3' H3' 331.0 322.5
O5' C5' H5' C4' 119.8 120.1
O5' C5' H5' H5'' 239.0 239.9
C4' C5' H5' H5'' 119.2 119.9
H5' C5' C4' O4' 66.5 185.7
H5' C5' C4' C3' 184.2 300.0
H5' C5' C4' H4' 306.9 62.9
O5' C5' H5'' C4' 240.2 239.9
O5' C5' H5'' H5' 120.9 120.0
C4' C5' H5'' H5' 240.7 240.1
H5'' C5' C4' O4' 185.7 305.6
H5'' C5' C4' C3' 303.4 59.9
H5'' C5' C4' H4' 66.1 182.8
O4' C4' C5' H5' 66.5 185.7
O4' C4' C5' H5'' 185.7 305.6
C5' C4' O4' C3' 121.8 118.7
C5' C4' O4' H4' 239.5 237.1
C3' C4' O4' H4' 117.7 118.4
O4' C4' C3' O3' 214.1 204.9
O4' C4' C3' C2' 334.8 323.1
O4' C4' C3' H3' 90.4 81.3
C4' O4' C1' C2' 333.7 333.7
C4' O4' C1' N9 215.6 214.2
C4' O4' C1' H1' 92.4 93.2
C3' C4' C5' H5' 184.2 300.0
C3' C4' C5' H5'' 303.4 59.9
C5' C4' C3' O4' 240.6 241.2
C5' C4' C3' H4' 123.3 122.9
O4' C4' C3' H4' 242.7 241.7
C3' C4' O4' C1' 32.7 39.8
O3' C3' C4' C2' 239.2 241.8
O3' C3' C4' H3' 123.7 123.5
C4' C3' O3' HO3' 180.0 174.2
C2' C3' C4' H3' 244.4 241.7
C4' C3' C2' C1' 9.4 20.9
C4' C3' C2' H2' 128.8 262.2
C4' C3' C2' H2'' 251.6 139.6
H4' C4' C5' H5' 306.9 62.9
H4' C4' C5' H5'' 66.1 182.8
C5' C4' H4' O4' 119.7 123.0
C5' C4' H4' C3' 235.3 237.0
O4' C4' H4' C3' 115.6 114.0
H4' C4' O4' C1' 275.1 281.4
H4' C4' C3' O3' 331.4 323.2
H4' C4' C3' C2' 92.2 81.4
H4' C4' C3' H3' 207.7 199.7
C1' O4' C4' C3' 32.7 39.8
C1' O4' C4' H4' 275.1 281.4
C3' C2' C1' O4' 9.3 1.9
O4' C1' C2' H2' 252.2 120.7
O4' C1' C2' H2'' 130.6 243.3
C2' C1' O4' N9 118.1 119.6
C2' C1' O4' H1' 241.2 240.5
N9 C1' O4' H1' 123.1 121.0
O4' C1' N9 C8 31.5 28.3
O4' C1' N9 C4 200.3 208.3
O3' C3' C4' H4' 331.4 323.2
C4' C3' O3' C2' 115.6 112.7
C4' C3' O3' H3' 237.4 236.4
C2' C3' O3' H3' 121.8 123.7
O3' C3' C2' C1' 130.7 139.1
O3' C3' C2' H2' 250.1 20.4
O3' C3' C2' H2'' 12.9 257.8
C2' C3' C4' H4' 92.2 81.4
C4' C3' C2' O3' 238.7 241.8
C4' C3' C2' H3' 115.7 118.2
O4' C1' C2' C3' 9.3 1.9
O3' C3' C2' H3' 237.0 236.4
C2' C3' O3' HO3' 64.4 61.5
C1' C2' C3' H2' 240.6 118.7
C1' C2' C3' H2'' 117.9 241.4
C3' C2' C1' N9 129.3 121.4
C3' C2' C1' H1' 251.1 242.4
H2' C2' C3' H2'' 237.2 122.6
H3' C3' C4' H4' 207.7 199.7
C4' C3' H3' O3' 124.7 123.6
C4' C3' H3' C2' 248.2 247.2
O3' C3' H3' C2' 123.5 123.6
H3' C3' O3' HO3' 302.6 297.8
H3' C3' C2' C1' 253.7 262.7
H3' C3' C2' H2' 13.1 144.0
H3' C3' C2' H2'' 135.8 21.3
HO3' O3' C3' C2' 64.4 61.5
HO3' O3' C3' H3' 302.6 297.8
O4' C1' C2' N9 239.9 240.5
O4' C1' C2' H1' 118.2 119.5
C1' C2' C3' H3' 253.7 262.7
C3' C2' C1' H2' 117.1 241.2
C3' C2' C1' H2'' 238.7 118.6
H2' C2' C1' H2'' 121.6 237.4
N9 C1' C2' H1' 238.3 239.0
C2' C1' N9 C8 274.4 270.3
C2' C1' N9 C4 83.2 90.3
H2' C2' C3' H3' 13.1 144.0
C3' C2' H2' C1' 244.3 114.8
C3' C2' H2' H2'' 124.2 237.4
C1' C2' H2' H2'' 240.0 122.6
H2' C2' C1' N9 12.3 240.2
H2' C2' C1' H1' 134.0 1.2
H2'' C2' C3' H3' 135.8 21.3
C3' C2' H2'' C1' 116.6 245.3
C3' C2' H2'' H2' 238.7 122.6
C1' C2' H2'' H2' 122.1 237.4
H2'' C2' C1' N9 250.6 2.8
H2'' C2' C1' H1' 12.4 123.8
O4' C1' N9 C2' 117.2 118.0
O4' C1' N9 H1' 238.1 239.0
N9 C1' C2' H2' 12.3 240.2
N9 C1' C2' H2'' 250.6 2.8
C2' C1' N9 H1' 121.0 121.0
C8 N9 C1' C4 191.2 180.0
C1' N9 C8 N7 174.0 180.0
C1' N9 C8 H8 355.0 359.9
C1' N9 C4 C5 185.0 180.2
C1' N9 C4 N3 4.8 0.1
O4' C1' H1' C2' 243.2 242.0
O4' C1' H1' N9 123.2 120.9
H1' C1' C2' H2' 134.0 1.2
H1' C1' C2' H2'' 12.4 123.8
C2' C1' H1' N9 240.0 238.9
H1' C1' N9 C8 153.4 149.3
H1' C1' N9 C4 322.2 329.3
C8 N9 C1' H1' 153.4 149.3
C1' N9 C8 C4 170.6 180.0
C8 N9 C4 C5 356.0 0.2
C8 N9 C4 N3 175.8 180.0
N7 C8 N9 H8 179.0 180.1
N9 C8 N7 C5 358.8 359.8
C4 N9 C1' H1' 322.2 329.3
C1' N9 C4 C8 189.0 180.0
C4 N9 C8 N7 3.4 0.0
C4 N9 C8 H8 184.4 179.9
N7 C5 C4 N9 3.6 359.6
C6 C5 C4 N9 181.6 180.3
C5 C4 N9 N3 180.2 180.2
C2 N3 C4 N9 178.7 180.0
N7 C8 N9 C4 3.4 0.0
N9 C8 N7 H8 181.0 179.9
C8 N7 C5 C6 180.9 179.5
C8 N7 C5 C4 358.5 0.4
H8 C8 N9 C4 184.4 179.9
N9 C8 H8 N7 179.0 180.1
H8 C8 N7 C5 177.8 179.8
N9 C4 C5 N7 3.6 359.6
C5 N7 C8 H8 177.8 179.8
C6 C5 N7 C4 182.4 179.2
N7 C5 C6 N6 357.2 0.7
N7 C5 C6 N1 176.8 180.4
N7 C5 C4 N3 183.7 179.8
N9 C4 C5 C6 181.6 180.3
N7 C5 C6 C4 177.5 180.9
C6 C5 C4 N3 1.8 0.5
N6 C6 C5 N1 180.4 180.3
C5 C6 N6 HN61 0.5 179.7
C5 C6 N6 HN62 181.7 359.5
C5 C6 N1 C2 359.4 0.3
N9 C4 C5 N3 179.8 179.9
N7 C5 C4 C6 182.0 179.3
C4 C5 C6 N6 179.7 179.8
C4 C5 C6 N1 359.4 359.5
C2 N3 C4 C5 358.5 359.8
N6 C6 C5 C4 179.7 179.8
C5 C6 N6 N1 179.6 179.7
N6 C6 N1 C2 179.1 180.0
HN61 N6 C6 HN62 178.7 180.2
N1 C6 C5 C4 359.4 359.5
C5 C6 N1 N6 180.3 180.3
N1 C6 N6 HN61 180.8 360.0
N1 C6 N6 HN62 2.1 179.8
C6 N1 C2 N3 0.9 0.1
C6 N1 C2 H2 180.5 180.0
HN61 N6 C6 N1 180.8 360.0
C6 N6 HN61 HN62 181.3 179.8
HN62 N6 C6 N1 2.1 179.8
C6 N6 HN62 HN61 178.7 180.2
N3 C2 N1 H2 180.4 180.1
N1 C2 N3 C4 0.1 359.9
N9 C4 N3 C2 178.7 180.0
C5 C4 N3 C2 358.5 359.8
N1 C2 N3 H2 179.6 179.9
N1 C2 H2 N3 180.4 180.1
H2 C2 N3 C4 180.5 180.0
N9 C4 N3 C5 180.2 180.2
C4 N3 C2 H2 180.5 180.0