PDB Chemical Component AS
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AS
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
P |
OP1 |
1.480 |
1.610 |
P |
S2P |
2.130 |
1.863 |
P |
OP3 |
1.623 |
1.609 |
P |
O5' |
1.619 |
1.609 |
OP1 |
HOP1 |
0.950 |
0.966 |
OP3 |
HOP3 |
0.951 |
0.966 |
O5' |
C5' |
1.419 |
1.428 |
C5' |
C4' |
1.536 |
1.529 |
C5' |
H5' |
1.090 |
1.090 |
C5' |
H5'' |
1.090 |
1.090 |
C4' |
O4' |
1.415 |
1.446 |
C4' |
C3' |
1.532 |
1.550 |
C4' |
H4' |
1.091 |
1.090 |
O4' |
C1' |
1.411 |
1.437 |
C3' |
O3' |
1.420 |
1.430 |
C3' |
C2' |
1.523 |
1.547 |
C3' |
H3' |
1.090 |
1.090 |
O3' |
HO3' |
0.950 |
0.967 |
C2' |
C1' |
1.523 |
1.540 |
C2' |
H2' |
1.088 |
1.090 |
C2' |
H2'' |
1.086 |
1.090 |
C1' |
N9 |
1.476 |
1.465 |
C1' |
H1' |
1.093 |
1.090 |
N9 |
C8 |
1.373 |
1.362 |
N9 |
C4 |
1.373 |
1.373 |
C8 |
N7 |
1.303 |
1.301 |
C8 |
H8 |
1.078 |
1.080 |
N7 |
C5 |
1.389 |
1.355 |
C5 |
C6 |
1.409 |
1.405 |
C5 |
C4 |
1.372 |
1.404 |
C6 |
N6 |
1.337 |
1.384 |
C6 |
N1 |
1.347 |
1.329 |
N6 |
HN61 |
1.010 |
0.970 |
N6 |
HN62 |
1.011 |
0.970 |
N1 |
C2 |
1.330 |
1.320 |
C2 |
N3 |
1.330 |
1.316 |
C2 |
H2 |
1.080 |
1.081 |
N3 |
C4 |
1.362 |
1.329 |
Bond Angles for AS
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
OP1 |
P |
S2P |
120.3 |
109.4 |
OP1 |
P |
OP3 |
107.8 |
109.4 |
OP1 |
P |
O5' |
108.0 |
109.5 |
P |
OP1 |
HOP1 |
120.3 |
106.8 |
S2P |
P |
OP3 |
107.5 |
109.5 |
S2P |
P |
O5' |
106.4 |
109.5 |
OP3 |
P |
O5' |
105.9 |
109.5 |
P |
OP3 |
HOP3 |
107.9 |
106.8 |
P |
O5' |
C5' |
123.0 |
106.8 |
O5' |
C5' |
C4' |
109.2 |
109.5 |
O5' |
C5' |
H5' |
110.0 |
109.5 |
O5' |
C5' |
H5'' |
110.2 |
109.5 |
C4' |
C5' |
H5' |
109.2 |
109.4 |
C4' |
C5' |
H5'' |
109.1 |
109.4 |
C5' |
C4' |
O4' |
109.1 |
110.8 |
C5' |
C4' |
C3' |
112.8 |
110.7 |
C5' |
C4' |
H4' |
110.4 |
110.6 |
H5' |
C5' |
H5'' |
109.1 |
109.4 |
O4' |
C4' |
C3' |
106.1 |
103.6 |
O4' |
C4' |
H4' |
108.9 |
110.5 |
C4' |
O4' |
C1' |
108.6 |
106.8 |
C3' |
C4' |
H4' |
109.4 |
110.6 |
C4' |
C3' |
O3' |
112.7 |
110.9 |
C4' |
C3' |
C2' |
103.1 |
102.1 |
C4' |
C3' |
H3' |
109.1 |
110.9 |
O4' |
C1' |
C2' |
106.8 |
107.5 |
O4' |
C1' |
N9 |
111.4 |
109.8 |
O4' |
C1' |
H1' |
109.1 |
109.9 |
O3' |
C3' |
C2' |
111.9 |
110.9 |
O3' |
C3' |
H3' |
110.9 |
110.8 |
C3' |
O3' |
HO3' |
112.6 |
106.7 |
C2' |
C3' |
H3' |
108.9 |
111.0 |
C3' |
C2' |
C1' |
105.7 |
104.2 |
C3' |
C2' |
H2' |
108.0 |
110.5 |
C3' |
C2' |
H2'' |
113.1 |
110.4 |
C1' |
C2' |
H2' |
111.4 |
110.5 |
C1' |
C2' |
H2'' |
107.9 |
110.5 |
C2' |
C1' |
N9 |
108.3 |
109.9 |
C2' |
C1' |
H1' |
110.0 |
109.8 |
H2' |
C2' |
H2'' |
110.6 |
110.5 |
N9 |
C1' |
H1' |
111.2 |
109.9 |
C1' |
N9 |
C8 |
128.6 |
126.3 |
C1' |
N9 |
C4 |
125.6 |
126.3 |
C8 |
N9 |
C4 |
105.1 |
107.4 |
N9 |
C8 |
N7 |
114.3 |
110.0 |
N9 |
C8 |
H8 |
123.3 |
125.0 |
N9 |
C4 |
C5 |
106.2 |
106.0 |
N9 |
C4 |
N3 |
127.0 |
134.9 |
N7 |
C8 |
H8 |
122.3 |
125.0 |
C8 |
N7 |
C5 |
103.5 |
109.5 |
N7 |
C5 |
C6 |
132.9 |
134.7 |
N7 |
C5 |
C4 |
110.7 |
107.1 |
C6 |
C5 |
C4 |
116.3 |
118.2 |
C5 |
C6 |
N6 |
122.9 |
120.8 |
C5 |
C6 |
N1 |
118.3 |
118.4 |
C5 |
C4 |
N3 |
126.8 |
119.1 |
N6 |
C6 |
N1 |
118.9 |
120.8 |
C6 |
N6 |
HN61 |
119.4 |
120.0 |
C6 |
N6 |
HN62 |
120.0 |
120.0 |
C6 |
N1 |
C2 |
119.3 |
121.2 |
HN61 |
N6 |
HN62 |
120.6 |
120.0 |
N1 |
C2 |
N3 |
128.3 |
122.5 |
N1 |
C2 |
H2 |
115.7 |
118.7 |
N3 |
C2 |
H2 |
116.0 |
118.8 |
C2 |
N3 |
C4 |
111.1 |
120.6 |
Torsion Angles for AS
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
S2P |
P |
OP1 |
OP3 |
123.7 |
240.0 |
S2P |
P |
OP1 |
O5' |
237.7 |
120.0 |
OP3 |
P |
OP1 |
O5' |
114.0 |
239.9 |
OP1 |
P |
OP3 |
HOP3 |
180.0 |
60.1 |
OP1 |
P |
O5' |
C5' |
36.1 |
180.0 |
OP1 |
P |
S2P |
OP3 |
236.1 |
119.9 |
OP1 |
P |
S2P |
O5' |
123.1 |
240.0 |
S2P |
P |
OP1 |
HOP1 |
180.0 |
300.0 |
OP3 |
P |
S2P |
O5' |
247.0 |
120.1 |
S2P |
P |
OP3 |
HOP3 |
48.8 |
180.0 |
S2P |
P |
O5' |
C5' |
166.6 |
60.0 |
OP1 |
P |
OP3 |
S2P |
131.2 |
240.1 |
OP1 |
P |
OP3 |
O5' |
244.6 |
120.1 |
OP3 |
P |
OP1 |
HOP1 |
56.3 |
60.0 |
S2P |
P |
OP3 |
O5' |
113.4 |
240.0 |
OP3 |
P |
O5' |
C5' |
280.8 |
300.0 |
OP1 |
P |
O5' |
S2P |
229.5 |
120.0 |
OP1 |
P |
O5' |
OP3 |
115.3 |
240.0 |
O5' |
P |
OP1 |
HOP1 |
302.3 |
180.0 |
S2P |
P |
O5' |
OP3 |
245.8 |
120.0 |
O5' |
P |
OP3 |
HOP3 |
295.4 |
300.0 |
P |
O5' |
C5' |
C4' |
178.3 |
180.0 |
P |
O5' |
C5' |
H5' |
58.4 |
60.0 |
P |
O5' |
C5' |
H5'' |
298.1 |
300.0 |
HOP1 |
OP1 |
P |
S2P |
180.0 |
300.0 |
HOP1 |
OP1 |
P |
OP3 |
56.3 |
60.0 |
HOP1 |
OP1 |
P |
O5' |
302.3 |
180.0 |
HOP3 |
OP3 |
P |
O5' |
295.4 |
300.0 |
C4' |
C5' |
O5' |
H5' |
119.9 |
120.0 |
C4' |
C5' |
O5' |
H5'' |
240.2 |
240.0 |
O5' |
C5' |
C4' |
O4' |
306.2 |
65.7 |
O5' |
C5' |
C4' |
C3' |
63.9 |
180.0 |
O5' |
C5' |
C4' |
H4' |
186.6 |
302.9 |
H5' |
C5' |
O5' |
H5'' |
120.4 |
120.0 |
O5' |
C5' |
C4' |
H5' |
239.7 |
240.0 |
O5' |
C5' |
C4' |
H5'' |
120.5 |
120.1 |
H5' |
C5' |
C4' |
H5'' |
240.8 |
240.1 |
O4' |
C4' |
C5' |
C3' |
242.3 |
245.7 |
O4' |
C4' |
C5' |
H4' |
119.6 |
122.8 |
C5' |
C4' |
O4' |
C1' |
154.5 |
158.5 |
C3' |
C4' |
C5' |
H4' |
237.3 |
237.1 |
C5' |
C4' |
C3' |
O3' |
94.7 |
86.1 |
C5' |
C4' |
C3' |
C2' |
215.4 |
204.3 |
C5' |
C4' |
C3' |
H3' |
331.0 |
322.5 |
O5' |
C5' |
H5' |
C4' |
119.8 |
120.1 |
O5' |
C5' |
H5' |
H5'' |
239.0 |
239.9 |
C4' |
C5' |
H5' |
H5'' |
119.2 |
119.9 |
H5' |
C5' |
C4' |
O4' |
66.5 |
185.7 |
H5' |
C5' |
C4' |
C3' |
184.2 |
300.0 |
H5' |
C5' |
C4' |
H4' |
306.9 |
62.9 |
O5' |
C5' |
H5'' |
C4' |
240.2 |
239.9 |
O5' |
C5' |
H5'' |
H5' |
120.9 |
120.0 |
C4' |
C5' |
H5'' |
H5' |
240.7 |
240.1 |
H5'' |
C5' |
C4' |
O4' |
185.7 |
305.6 |
H5'' |
C5' |
C4' |
C3' |
303.4 |
59.9 |
H5'' |
C5' |
C4' |
H4' |
66.1 |
182.8 |
O4' |
C4' |
C5' |
H5' |
66.5 |
185.7 |
O4' |
C4' |
C5' |
H5'' |
185.7 |
305.6 |
C5' |
C4' |
O4' |
C3' |
121.8 |
118.7 |
C5' |
C4' |
O4' |
H4' |
239.5 |
237.1 |
C3' |
C4' |
O4' |
H4' |
117.7 |
118.4 |
O4' |
C4' |
C3' |
O3' |
214.1 |
204.9 |
O4' |
C4' |
C3' |
C2' |
334.8 |
323.1 |
O4' |
C4' |
C3' |
H3' |
90.4 |
81.3 |
C4' |
O4' |
C1' |
C2' |
333.7 |
333.7 |
C4' |
O4' |
C1' |
N9 |
215.6 |
214.2 |
C4' |
O4' |
C1' |
H1' |
92.4 |
93.2 |
C3' |
C4' |
C5' |
H5' |
184.2 |
300.0 |
C3' |
C4' |
C5' |
H5'' |
303.4 |
59.9 |
C5' |
C4' |
C3' |
O4' |
240.6 |
241.2 |
C5' |
C4' |
C3' |
H4' |
123.3 |
122.9 |
O4' |
C4' |
C3' |
H4' |
242.7 |
241.7 |
C3' |
C4' |
O4' |
C1' |
32.7 |
39.8 |
O3' |
C3' |
C4' |
C2' |
239.2 |
241.8 |
O3' |
C3' |
C4' |
H3' |
123.7 |
123.5 |
C4' |
C3' |
O3' |
HO3' |
180.0 |
174.2 |
C2' |
C3' |
C4' |
H3' |
244.4 |
241.7 |
C4' |
C3' |
C2' |
C1' |
9.4 |
20.9 |
C4' |
C3' |
C2' |
H2' |
128.8 |
262.2 |
C4' |
C3' |
C2' |
H2'' |
251.6 |
139.6 |
H4' |
C4' |
C5' |
H5' |
306.9 |
62.9 |
H4' |
C4' |
C5' |
H5'' |
66.1 |
182.8 |
C5' |
C4' |
H4' |
O4' |
119.7 |
123.0 |
C5' |
C4' |
H4' |
C3' |
235.3 |
237.0 |
O4' |
C4' |
H4' |
C3' |
115.6 |
114.0 |
H4' |
C4' |
O4' |
C1' |
275.1 |
281.4 |
H4' |
C4' |
C3' |
O3' |
331.4 |
323.2 |
H4' |
C4' |
C3' |
C2' |
92.2 |
81.4 |
H4' |
C4' |
C3' |
H3' |
207.7 |
199.7 |
C1' |
O4' |
C4' |
C3' |
32.7 |
39.8 |
C1' |
O4' |
C4' |
H4' |
275.1 |
281.4 |
C3' |
C2' |
C1' |
O4' |
9.3 |
1.9 |
O4' |
C1' |
C2' |
H2' |
252.2 |
120.7 |
O4' |
C1' |
C2' |
H2'' |
130.6 |
243.3 |
C2' |
C1' |
O4' |
N9 |
118.1 |
119.6 |
C2' |
C1' |
O4' |
H1' |
241.2 |
240.5 |
N9 |
C1' |
O4' |
H1' |
123.1 |
121.0 |
O4' |
C1' |
N9 |
C8 |
31.5 |
28.3 |
O4' |
C1' |
N9 |
C4 |
200.3 |
208.3 |
O3' |
C3' |
C4' |
H4' |
331.4 |
323.2 |
C4' |
C3' |
O3' |
C2' |
115.6 |
112.7 |
C4' |
C3' |
O3' |
H3' |
237.4 |
236.4 |
C2' |
C3' |
O3' |
H3' |
121.8 |
123.7 |
O3' |
C3' |
C2' |
C1' |
130.7 |
139.1 |
O3' |
C3' |
C2' |
H2' |
250.1 |
20.4 |
O3' |
C3' |
C2' |
H2'' |
12.9 |
257.8 |
C2' |
C3' |
C4' |
H4' |
92.2 |
81.4 |
C4' |
C3' |
C2' |
O3' |
238.7 |
241.8 |
C4' |
C3' |
C2' |
H3' |
115.7 |
118.2 |
O4' |
C1' |
C2' |
C3' |
9.3 |
1.9 |
O3' |
C3' |
C2' |
H3' |
237.0 |
236.4 |
C2' |
C3' |
O3' |
HO3' |
64.4 |
61.5 |
C1' |
C2' |
C3' |
H2' |
240.6 |
118.7 |
C1' |
C2' |
C3' |
H2'' |
117.9 |
241.4 |
C3' |
C2' |
C1' |
N9 |
129.3 |
121.4 |
C3' |
C2' |
C1' |
H1' |
251.1 |
242.4 |
H2' |
C2' |
C3' |
H2'' |
237.2 |
122.6 |
H3' |
C3' |
C4' |
H4' |
207.7 |
199.7 |
C4' |
C3' |
H3' |
O3' |
124.7 |
123.6 |
C4' |
C3' |
H3' |
C2' |
248.2 |
247.2 |
O3' |
C3' |
H3' |
C2' |
123.5 |
123.6 |
H3' |
C3' |
O3' |
HO3' |
302.6 |
297.8 |
H3' |
C3' |
C2' |
C1' |
253.7 |
262.7 |
H3' |
C3' |
C2' |
H2' |
13.1 |
144.0 |
H3' |
C3' |
C2' |
H2'' |
135.8 |
21.3 |
HO3' |
O3' |
C3' |
C2' |
64.4 |
61.5 |
HO3' |
O3' |
C3' |
H3' |
302.6 |
297.8 |
O4' |
C1' |
C2' |
N9 |
239.9 |
240.5 |
O4' |
C1' |
C2' |
H1' |
118.2 |
119.5 |
C1' |
C2' |
C3' |
H3' |
253.7 |
262.7 |
C3' |
C2' |
C1' |
H2' |
117.1 |
241.2 |
C3' |
C2' |
C1' |
H2'' |
238.7 |
118.6 |
H2' |
C2' |
C1' |
H2'' |
121.6 |
237.4 |
N9 |
C1' |
C2' |
H1' |
238.3 |
239.0 |
C2' |
C1' |
N9 |
C8 |
274.4 |
270.3 |
C2' |
C1' |
N9 |
C4 |
83.2 |
90.3 |
H2' |
C2' |
C3' |
H3' |
13.1 |
144.0 |
C3' |
C2' |
H2' |
C1' |
244.3 |
114.8 |
C3' |
C2' |
H2' |
H2'' |
124.2 |
237.4 |
C1' |
C2' |
H2' |
H2'' |
240.0 |
122.6 |
H2' |
C2' |
C1' |
N9 |
12.3 |
240.2 |
H2' |
C2' |
C1' |
H1' |
134.0 |
1.2 |
H2'' |
C2' |
C3' |
H3' |
135.8 |
21.3 |
C3' |
C2' |
H2'' |
C1' |
116.6 |
245.3 |
C3' |
C2' |
H2'' |
H2' |
238.7 |
122.6 |
C1' |
C2' |
H2'' |
H2' |
122.1 |
237.4 |
H2'' |
C2' |
C1' |
N9 |
250.6 |
2.8 |
H2'' |
C2' |
C1' |
H1' |
12.4 |
123.8 |
O4' |
C1' |
N9 |
C2' |
117.2 |
118.0 |
O4' |
C1' |
N9 |
H1' |
238.1 |
239.0 |
N9 |
C1' |
C2' |
H2' |
12.3 |
240.2 |
N9 |
C1' |
C2' |
H2'' |
250.6 |
2.8 |
C2' |
C1' |
N9 |
H1' |
121.0 |
121.0 |
C8 |
N9 |
C1' |
C4 |
191.2 |
180.0 |
C1' |
N9 |
C8 |
N7 |
174.0 |
180.0 |
C1' |
N9 |
C8 |
H8 |
355.0 |
359.9 |
C1' |
N9 |
C4 |
C5 |
185.0 |
180.2 |
C1' |
N9 |
C4 |
N3 |
4.8 |
0.1 |
O4' |
C1' |
H1' |
C2' |
243.2 |
242.0 |
O4' |
C1' |
H1' |
N9 |
123.2 |
120.9 |
H1' |
C1' |
C2' |
H2' |
134.0 |
1.2 |
H1' |
C1' |
C2' |
H2'' |
12.4 |
123.8 |
C2' |
C1' |
H1' |
N9 |
240.0 |
238.9 |
H1' |
C1' |
N9 |
C8 |
153.4 |
149.3 |
H1' |
C1' |
N9 |
C4 |
322.2 |
329.3 |
C8 |
N9 |
C1' |
H1' |
153.4 |
149.3 |
C1' |
N9 |
C8 |
C4 |
170.6 |
180.0 |
C8 |
N9 |
C4 |
C5 |
356.0 |
0.2 |
C8 |
N9 |
C4 |
N3 |
175.8 |
180.0 |
N7 |
C8 |
N9 |
H8 |
179.0 |
180.1 |
N9 |
C8 |
N7 |
C5 |
358.8 |
359.8 |
C4 |
N9 |
C1' |
H1' |
322.2 |
329.3 |
C1' |
N9 |
C4 |
C8 |
189.0 |
180.0 |
C4 |
N9 |
C8 |
N7 |
3.4 |
0.0 |
C4 |
N9 |
C8 |
H8 |
184.4 |
179.9 |
N7 |
C5 |
C4 |
N9 |
3.6 |
359.6 |
C6 |
C5 |
C4 |
N9 |
181.6 |
180.3 |
C5 |
C4 |
N9 |
N3 |
180.2 |
180.2 |
C2 |
N3 |
C4 |
N9 |
178.7 |
180.0 |
N7 |
C8 |
N9 |
C4 |
3.4 |
0.0 |
N9 |
C8 |
N7 |
H8 |
181.0 |
179.9 |
C8 |
N7 |
C5 |
C6 |
180.9 |
179.5 |
C8 |
N7 |
C5 |
C4 |
358.5 |
0.4 |
H8 |
C8 |
N9 |
C4 |
184.4 |
179.9 |
N9 |
C8 |
H8 |
N7 |
179.0 |
180.1 |
H8 |
C8 |
N7 |
C5 |
177.8 |
179.8 |
N9 |
C4 |
C5 |
N7 |
3.6 |
359.6 |
C5 |
N7 |
C8 |
H8 |
177.8 |
179.8 |
C6 |
C5 |
N7 |
C4 |
182.4 |
179.2 |
N7 |
C5 |
C6 |
N6 |
357.2 |
0.7 |
N7 |
C5 |
C6 |
N1 |
176.8 |
180.4 |
N7 |
C5 |
C4 |
N3 |
183.7 |
179.8 |
N9 |
C4 |
C5 |
C6 |
181.6 |
180.3 |
N7 |
C5 |
C6 |
C4 |
177.5 |
180.9 |
C6 |
C5 |
C4 |
N3 |
1.8 |
0.5 |
N6 |
C6 |
C5 |
N1 |
180.4 |
180.3 |
C5 |
C6 |
N6 |
HN61 |
0.5 |
179.7 |
C5 |
C6 |
N6 |
HN62 |
181.7 |
359.5 |
C5 |
C6 |
N1 |
C2 |
359.4 |
0.3 |
N9 |
C4 |
C5 |
N3 |
179.8 |
179.9 |
N7 |
C5 |
C4 |
C6 |
182.0 |
179.3 |
C4 |
C5 |
C6 |
N6 |
179.7 |
179.8 |
C4 |
C5 |
C6 |
N1 |
359.4 |
359.5 |
C2 |
N3 |
C4 |
C5 |
358.5 |
359.8 |
N6 |
C6 |
C5 |
C4 |
179.7 |
179.8 |
C5 |
C6 |
N6 |
N1 |
179.6 |
179.7 |
N6 |
C6 |
N1 |
C2 |
179.1 |
180.0 |
HN61 |
N6 |
C6 |
HN62 |
178.7 |
180.2 |
N1 |
C6 |
C5 |
C4 |
359.4 |
359.5 |
C5 |
C6 |
N1 |
N6 |
180.3 |
180.3 |
N1 |
C6 |
N6 |
HN61 |
180.8 |
360.0 |
N1 |
C6 |
N6 |
HN62 |
2.1 |
179.8 |
C6 |
N1 |
C2 |
N3 |
0.9 |
0.1 |
C6 |
N1 |
C2 |
H2 |
180.5 |
180.0 |
HN61 |
N6 |
C6 |
N1 |
180.8 |
360.0 |
C6 |
N6 |
HN61 |
HN62 |
181.3 |
179.8 |
HN62 |
N6 |
C6 |
N1 |
2.1 |
179.8 |
C6 |
N6 |
HN62 |
HN61 |
178.7 |
180.2 |
N3 |
C2 |
N1 |
H2 |
180.4 |
180.1 |
N1 |
C2 |
N3 |
C4 |
0.1 |
359.9 |
N9 |
C4 |
N3 |
C2 |
178.7 |
180.0 |
C5 |
C4 |
N3 |
C2 |
358.5 |
359.8 |
N1 |
C2 |
N3 |
H2 |
179.6 |
179.9 |
N1 |
C2 |
H2 |
N3 |
180.4 |
180.1 |
H2 |
C2 |
N3 |
C4 |
180.5 |
180.0 |
N9 |
C4 |
N3 |
C5 |
180.2 |
180.2 |
C4 |
N3 |
C2 |
H2 |
180.5 |
180.0 |