PDB Chemical Component AR5
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AR5
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O1 |
C5 |
1.206 |
1.209 |
| O |
C5 |
1.302 |
1.342 |
| C5 |
C4 |
1.526 |
1.506 |
| C8 |
C7 |
1.522 |
1.529 |
| O3 |
C6 |
1.217 |
1.215 |
| C9 |
C7 |
1.523 |
1.529 |
| C4 |
N3 |
1.447 |
1.466 |
| C4 |
C3 |
1.538 |
1.530 |
| C6 |
N3 |
1.343 |
1.348 |
| C6 |
O2 |
1.354 |
1.346 |
| C7 |
O2 |
1.485 |
1.453 |
| C7 |
C10 |
1.527 |
1.529 |
| C3 |
C2 |
1.508 |
1.530 |
| N2 |
C1 |
1.459 |
1.465 |
| N2 |
C |
1.338 |
1.375 |
| C1 |
C2 |
1.500 |
1.531 |
| C |
N1 |
1.334 |
1.303 |
| C |
N |
1.311 |
1.376 |
| C10 |
H1 |
1.100 |
1.090 |
| C10 |
H2 |
1.100 |
1.090 |
| C10 |
H3 |
1.099 |
1.090 |
| C9 |
H4 |
1.100 |
1.089 |
| C9 |
H5 |
1.100 |
1.090 |
| C9 |
H6 |
1.100 |
1.091 |
| C8 |
H7 |
1.100 |
1.090 |
| C8 |
H8 |
1.100 |
1.090 |
| C8 |
H9 |
1.100 |
1.090 |
| N3 |
H10 |
1.000 |
0.970 |
| C4 |
H11 |
1.100 |
1.090 |
| O |
H12 |
0.950 |
0.966 |
| C3 |
H13 |
1.100 |
1.090 |
| C3 |
H14 |
1.100 |
1.091 |
| C2 |
H15 |
1.100 |
1.090 |
| C2 |
H16 |
1.100 |
1.090 |
| C1 |
H17 |
1.100 |
1.090 |
| C1 |
H18 |
1.100 |
1.090 |
| N2 |
H19 |
1.000 |
0.969 |
| N1 |
H20 |
1.000 |
0.970 |
| N |
H22 |
1.000 |
0.970 |
| N |
H23 |
1.000 |
0.969 |
Bond Angles for AR5
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C5 |
C4 |
C3 |
112.1 |
109.5 |
| C5 |
C4 |
H11 |
107.6 |
109.5 |
| O3 |
C6 |
N3 |
123.9 |
120.0 |
| O3 |
C6 |
O2 |
126.2 |
120.0 |
| C4 |
N3 |
H10 |
120.0 |
120.0 |
| C4 |
C3 |
C2 |
113.4 |
109.5 |
| C3 |
C4 |
H11 |
107.4 |
109.5 |
| C4 |
C3 |
H13 |
108.5 |
109.5 |
| C4 |
C3 |
H14 |
108.5 |
109.5 |
| O2 |
C6 |
N3 |
109.9 |
120.0 |
| C6 |
N3 |
H10 |
120.0 |
120.1 |
| C7 |
C10 |
H1 |
109.5 |
109.5 |
| C7 |
C10 |
H2 |
109.5 |
109.5 |
| C7 |
C10 |
H3 |
109.5 |
109.5 |
| C2 |
C3 |
H13 |
108.5 |
109.5 |
| C2 |
C3 |
H14 |
108.5 |
109.5 |
| C3 |
C2 |
H15 |
109.0 |
109.5 |
| C3 |
C2 |
H16 |
109.0 |
109.5 |
| N2 |
C1 |
H17 |
109.0 |
109.5 |
| N2 |
C1 |
H18 |
109.0 |
109.5 |
| N2 |
C |
N1 |
118.1 |
120.0 |
| N2 |
C |
N |
119.2 |
120.0 |
| C |
N2 |
H19 |
118.1 |
120.0 |
| C1 |
C2 |
H15 |
109.0 |
109.4 |
| C1 |
C2 |
H16 |
109.0 |
109.5 |
| N1 |
C |
N |
122.7 |
120.0 |
| C |
N1 |
H20 |
112.0 |
120.0 |
| C |
N |
H22 |
120.0 |
120.0 |
| C |
N |
H23 |
120.0 |
120.0 |
| H1 |
C10 |
H2 |
109.5 |
109.5 |
| H1 |
C10 |
H3 |
109.5 |
109.5 |
| H2 |
C10 |
H3 |
109.5 |
109.5 |
| H4 |
C9 |
H5 |
109.5 |
109.5 |
| H4 |
C9 |
H6 |
109.5 |
109.5 |
| H5 |
C9 |
H6 |
109.5 |
109.5 |
| H7 |
C8 |
H8 |
109.5 |
109.5 |
| H7 |
C8 |
H9 |
109.4 |
109.4 |
| H8 |
C8 |
H9 |
109.5 |
109.5 |
| H13 |
C3 |
H14 |
109.5 |
109.5 |
| H15 |
C2 |
H16 |
109.5 |
109.5 |
| H17 |
C1 |
H18 |
109.5 |
109.5 |
| H22 |
N |
H23 |
120.0 |
120.1 |
Torsion Angles for AR5
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C5 |
C4 |
C3 |
278.6 |
120.0 |
| O1 |
C5 |
C4 |
H11 |
36.5 |
240.0 |
| O |
C5 |
C4 |
C3 |
97.8 |
300.0 |
| O |
C5 |
C4 |
H11 |
215.7 |
60.0 |
| C5 |
C4 |
N3 |
H10 |
115.9 |
95.0 |
| C5 |
C4 |
C3 |
C2 |
165.3 |
175.0 |
| C3 |
C4 |
C5 |
H11 |
242.1 |
240.0 |
| C5 |
C4 |
C3 |
H13 |
285.9 |
295.0 |
| C5 |
C4 |
C3 |
H14 |
44.7 |
55.0 |
| C8 |
C7 |
C10 |
H1 |
180.0 |
180.0 |
| C8 |
C7 |
C10 |
H2 |
300.0 |
300.0 |
| C8 |
C7 |
C10 |
H3 |
60.0 |
60.0 |
| O2 |
C6 |
O3 |
N3 |
179.7 |
180.3 |
| O3 |
C6 |
N3 |
H10 |
174.4 |
180.0 |
| C9 |
C7 |
C10 |
H1 |
306.2 |
300.0 |
| C9 |
C7 |
C10 |
H2 |
66.2 |
60.0 |
| C9 |
C7 |
C10 |
H3 |
186.2 |
180.0 |
| C6 |
N3 |
C4 |
H10 |
180.0 |
180.0 |
| C5 |
C4 |
C3 |
H11 |
118.0 |
120.0 |
| C3 |
C4 |
N3 |
H10 |
351.2 |
335.0 |
| C2 |
C3 |
C4 |
H13 |
239.4 |
240.0 |
| C2 |
C3 |
C4 |
H14 |
120.6 |
120.0 |
| C4 |
C3 |
C2 |
H15 |
42.5 |
300.0 |
| C4 |
C3 |
C2 |
H16 |
162.0 |
60.0 |
| H13 |
C3 |
C4 |
H14 |
241.2 |
240.0 |
| O3 |
C6 |
N3 |
O2 |
179.8 |
180.3 |
| C4 |
N3 |
C6 |
H10 |
180.0 |
180.0 |
| O3 |
C6 |
O2 |
N3 |
180.2 |
179.7 |
| O2 |
C6 |
N3 |
H10 |
354.7 |
359.7 |
| C7 |
O2 |
C6 |
N3 |
193.1 |
180.3 |
| H1 |
C10 |
C7 |
H2 |
240.0 |
240.0 |
| H1 |
C10 |
C7 |
H3 |
120.0 |
120.0 |
| H2 |
C10 |
C7 |
H3 |
240.0 |
240.0 |
| C2 |
C3 |
C4 |
H11 |
47.3 |
55.0 |
| C4 |
C3 |
C2 |
H13 |
120.6 |
120.0 |
| C4 |
C3 |
C2 |
H14 |
239.4 |
240.0 |
| C1 |
C2 |
C3 |
H15 |
239.8 |
240.0 |
| C1 |
C2 |
C3 |
H16 |
120.2 |
120.0 |
| H13 |
C3 |
C2 |
H14 |
118.8 |
120.0 |
| H15 |
C2 |
C3 |
H16 |
240.5 |
239.9 |
| N2 |
C1 |
C2 |
H15 |
157.5 |
60.0 |
| N2 |
C1 |
C2 |
H16 |
38.0 |
300.0 |
| H17 |
C1 |
N2 |
H18 |
240.5 |
120.1 |
| C |
N2 |
C1 |
H17 |
345.9 |
60.1 |
| C |
N2 |
C1 |
H18 |
105.5 |
300.0 |
| N1 |
C |
N2 |
N |
180.5 |
180.0 |
| N2 |
C |
N1 |
H20 |
179.5 |
180.0 |
| N2 |
C |
N |
H22 |
180.5 |
0.0 |
| N2 |
C |
N |
H23 |
0.5 |
180.0 |
| C1 |
C2 |
C3 |
H13 |
161.7 |
60.0 |
| C1 |
C2 |
C3 |
H14 |
42.8 |
300.0 |
| C3 |
C2 |
C1 |
H15 |
120.3 |
120.0 |
| C3 |
C2 |
C1 |
H16 |
239.8 |
240.0 |
| H15 |
C2 |
C1 |
H16 |
119.5 |
120.0 |
| N2 |
C |
N1 |
N |
179.5 |
180.0 |
| N1 |
C |
N2 |
H19 |
344.2 |
180.0 |
| N1 |
C |
N |
H22 |
360.0 |
180.0 |
| N1 |
C |
N |
H23 |
180.0 |
359.9 |
| N2 |
C |
N |
N1 |
180.5 |
180.0 |
| N |
C |
N2 |
H19 |
163.7 |
0.0 |
| N |
C |
N1 |
H20 |
360.0 |
0.0 |
| H22 |
N |
C |
H23 |
180.0 |
180.0 |
| C7 |
C10 |
H1 |
H2 |
120.0 |
120.0 |
| C7 |
C10 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C10 |
H1 |
H3 |
120.0 |
120.0 |
| C7 |
C10 |
H2 |
H1 |
240.0 |
240.0 |
| C7 |
C10 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C10 |
H2 |
H3 |
240.0 |
240.0 |
| C7 |
C10 |
H3 |
H1 |
120.0 |
120.1 |
| C7 |
C10 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C10 |
H3 |
H2 |
120.0 |
120.0 |
| H5 |
C9 |
H4 |
H6 |
120.0 |
120.0 |
| H4 |
C9 |
H5 |
H6 |
240.0 |
240.0 |
| H4 |
C9 |
H6 |
H5 |
120.0 |
120.0 |
| H8 |
C8 |
H7 |
H9 |
120.0 |
120.0 |
| H7 |
C8 |
H8 |
H9 |
240.0 |
240.0 |
| H7 |
C8 |
H9 |
H8 |
120.0 |
120.0 |
| C5 |
C4 |
H11 |
C3 |
239.1 |
240.0 |
| H11 |
C4 |
N3 |
H10 |
233.6 |
215.0 |
| H11 |
C4 |
C3 |
C2 |
47.3 |
55.0 |
| H11 |
C4 |
C3 |
H13 |
167.9 |
175.0 |
| H11 |
C4 |
C3 |
H14 |
286.7 |
294.9 |
| C4 |
C3 |
H13 |
C2 |
236.4 |
240.0 |
| H13 |
C3 |
C4 |
H11 |
167.9 |
175.0 |
| C4 |
C3 |
H13 |
H14 |
118.2 |
120.0 |
| C2 |
C3 |
H13 |
H14 |
241.8 |
240.0 |
| H13 |
C3 |
C2 |
H15 |
281.9 |
180.0 |
| H13 |
C3 |
C2 |
H16 |
41.4 |
300.0 |
| C4 |
C3 |
H14 |
C2 |
123.6 |
120.0 |
| H14 |
C3 |
C4 |
H11 |
286.7 |
294.9 |
| C4 |
C3 |
H14 |
H13 |
241.8 |
240.0 |
| C2 |
C3 |
H14 |
H13 |
118.2 |
120.0 |
| H14 |
C3 |
C2 |
H15 |
163.1 |
60.0 |
| H14 |
C3 |
C2 |
H16 |
282.6 |
180.0 |
| H15 |
C2 |
C3 |
H13 |
281.9 |
180.0 |
| H15 |
C2 |
C3 |
H14 |
163.1 |
60.0 |
| C3 |
C2 |
H15 |
H16 |
119.2 |
120.0 |
| C1 |
C2 |
H15 |
H16 |
240.8 |
240.0 |
| H16 |
C2 |
C3 |
H13 |
41.4 |
300.0 |
| H16 |
C2 |
C3 |
H14 |
282.6 |
180.0 |
| C3 |
C2 |
H16 |
H15 |
240.8 |
239.9 |
| C1 |
C2 |
H16 |
H15 |
119.2 |
120.0 |
| N2 |
C1 |
H17 |
H18 |
119.2 |
239.9 |
| H17 |
C1 |
C2 |
H15 |
37.3 |
180.0 |
| H17 |
C1 |
C2 |
H16 |
277.8 |
60.0 |
| N2 |
C1 |
H18 |
H17 |
240.8 |
120.0 |
| H18 |
C1 |
C2 |
H15 |
277.7 |
300.0 |
| H18 |
C1 |
C2 |
H16 |
158.2 |
180.0 |
| H19 |
N2 |
C1 |
H17 |
165.9 |
240.0 |
| H19 |
N2 |
C1 |
H18 |
285.5 |
119.9 |
| H19 |
N2 |
C |
N1 |
344.2 |
180.0 |
| H19 |
N2 |
C |
N |
163.7 |
0.0 |
| H20 |
N1 |
C |
N |
360.0 |
0.0 |
| C |
N |
H22 |
H23 |
180.0 |
180.0 |
| C |
N |
H23 |
H22 |
180.0 |
180.0 |