PDB Chemical Component AR0

Ideal Model

Chemical Description

Name 4-amino-1-{[amino(iminio)methyl]amino}-6-[4-(carboxymethyl)pyridinium-1-yl]-1,2,3,4,6-pentadeoxy-D-erythro-hexitol
Formula C14 H25 N5 O3
Formal charge 2
Molecular weight 311.380 g/mol
Component type peptide-like

Chemical features

Atom count 47
Chiral atom count 2
Chiral atoms CA C2
Observed leaving atoms OXT HXT H2 H24
Bond count 47
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 4-amino-1-{[amino(iminio)methyl]amino}-6-[4-(carboxymethyl)pyridinium-1-yl]-1,2,3,4,6-pentadeoxy-D-erythro-hexitol
Systematic name (OpenEye OEToolkits) [azanyl-[[(4S,5R)-4-azanyl-6-[4-(carboxymethyl)pyridin-1-ium-1-yl]-5-hydroxy-hexyl]amino]methylidene]azanium

Chemical Descriptors

Stereo SMILES (CACTVS) N[C@@H](CCCNC(N)=[NH2+])[C@H](O)C[n+]1ccc(CC(O)=O)cc1
SMILES (CACTVS) N[CH](CCCNC(N)=[NH2+])[CH](O)C[n+]1ccc(CC(O)=O)cc1
Stereo SMILES (OpenEye) c1c[n+](ccc1CC(=O)O)C[C@H]([C@H](CCCNC(=[NH2+])N)N)O
InChI descriptor InChI=1S/C14H23N5O3/c15-11(2-1-5-18-14(16)17)12(20)9-19-6-3-10(4-7-19)8-13(21)22/h3-4,6-7,11-12,20H,1-2,5,8-9,15H2,(H4-,16,17,18,21,22)/p+2/t11-,12+/m0/s1
InChIKey descriptor IANDEMWLHCVUSG-NWDGAFQWSA-P

Status Information

Last modified 2023-11-03
Created 2010-09-17
Release status REL
Model PDB code 1HBT
Processing site RCSB