PDB Chemical Component AQY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AQY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C12 |
C13 |
1.358 |
1.361 |
| C12 |
C11 |
1.410 |
1.408 |
| C13 |
C14 |
1.402 |
1.400 |
| C11 |
N10 |
1.314 |
1.327 |
| C11 |
N16 |
1.376 |
1.371 |
| C14 |
N15 |
1.306 |
1.307 |
| N10 |
C9 |
1.338 |
1.336 |
| N16 |
N15 |
1.396 |
1.398 |
| N16 |
C17 |
1.377 |
1.371 |
| C9 |
C4 |
1.470 |
1.482 |
| C9 |
C17 |
1.397 |
1.391 |
| C3 |
C4 |
1.392 |
1.394 |
| C3 |
C2 |
1.376 |
1.380 |
| C1 |
C2 |
1.505 |
1.506 |
| C4 |
C5 |
1.410 |
1.394 |
| C17 |
C18 |
1.476 |
1.474 |
| C2 |
C7 |
1.400 |
1.386 |
| C5 |
C6 |
1.383 |
1.380 |
| C7 |
C6 |
1.388 |
1.386 |
| C7 |
F8 |
1.341 |
1.351 |
| C18 |
C34 |
1.409 |
1.399 |
| C18 |
C19 |
1.410 |
1.404 |
| C34 |
C22 |
1.397 |
1.386 |
| O25 |
C24 |
1.220 |
1.215 |
| C19 |
C20 |
1.380 |
1.376 |
| C24 |
N23 |
1.355 |
1.348 |
| C24 |
C26 |
1.478 |
1.479 |
| C22 |
N23 |
1.391 |
1.394 |
| C22 |
N21 |
1.333 |
1.325 |
| C27 |
C26 |
1.410 |
1.399 |
| C27 |
C28 |
1.388 |
1.381 |
| C20 |
N21 |
1.324 |
1.321 |
| C26 |
C33 |
1.405 |
1.400 |
| C28 |
N29 |
1.331 |
1.320 |
| C33 |
C31 |
1.383 |
1.380 |
| N29 |
C31 |
1.330 |
1.320 |
| N29 |
O30 |
1.419 |
1.415 |
| C31 |
C32 |
1.513 |
1.507 |
| C5 |
H1 |
1.080 |
1.081 |
| C6 |
H2 |
1.080 |
1.080 |
| C13 |
H3 |
1.080 |
1.080 |
| C20 |
H4 |
1.080 |
1.080 |
| C28 |
H5 |
1.080 |
1.079 |
| C1 |
H6 |
1.100 |
1.091 |
| C1 |
H7 |
1.100 |
1.090 |
| C1 |
H8 |
1.100 |
1.090 |
| C3 |
H9 |
1.080 |
1.080 |
| C12 |
H10 |
1.079 |
1.081 |
| C14 |
H11 |
1.080 |
1.080 |
| C19 |
H12 |
1.080 |
1.080 |
| N23 |
H13 |
1.000 |
0.970 |
| C27 |
H14 |
1.080 |
1.080 |
| C32 |
H16 |
1.100 |
1.090 |
| C32 |
H17 |
1.100 |
1.090 |
| C32 |
H18 |
1.100 |
1.089 |
| C33 |
H19 |
1.080 |
1.080 |
| C34 |
H20 |
1.080 |
1.080 |
Bond Angles for AQY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
C13 |
C14 |
122.2 |
120.2 |
| C12 |
C13 |
H3 |
118.9 |
120.0 |
| C12 |
C11 |
N16 |
119.4 |
119.0 |
| C13 |
C14 |
N15 |
120.0 |
120.9 |
| C14 |
C13 |
H3 |
118.9 |
119.8 |
| C13 |
C14 |
H11 |
120.0 |
119.6 |
| C11 |
N16 |
N15 |
120.7 |
120.1 |
| N15 |
C14 |
H11 |
120.0 |
119.6 |
| N16 |
C17 |
C18 |
123.9 |
126.7 |
| C9 |
C17 |
C18 |
130.8 |
126.7 |
| C2 |
C1 |
H6 |
109.5 |
109.4 |
| C2 |
C1 |
H7 |
109.5 |
109.5 |
| C2 |
C1 |
H8 |
109.5 |
109.4 |
| C4 |
C5 |
C6 |
120.0 |
119.9 |
| C4 |
C5 |
H1 |
120.0 |
120.1 |
| C17 |
C18 |
C34 |
121.1 |
121.0 |
| C17 |
C18 |
C19 |
121.2 |
120.9 |
| C2 |
C7 |
F8 |
119.8 |
119.9 |
| C6 |
C5 |
H1 |
119.9 |
120.0 |
| C5 |
C6 |
H2 |
120.7 |
120.0 |
| C7 |
C6 |
H2 |
120.7 |
120.0 |
| C19 |
C18 |
C34 |
117.6 |
118.2 |
| C18 |
C34 |
H20 |
120.4 |
120.5 |
| C18 |
C19 |
H12 |
120.1 |
120.4 |
| C19 |
C20 |
N21 |
121.0 |
121.0 |
| C19 |
C20 |
H4 |
119.5 |
119.5 |
| C26 |
C24 |
N23 |
116.0 |
120.0 |
| C22 |
N23 |
C24 |
128.8 |
120.0 |
| C24 |
N23 |
H13 |
115.6 |
120.0 |
| C24 |
C26 |
C33 |
119.4 |
120.9 |
| N21 |
C22 |
N23 |
116.5 |
119.6 |
| C22 |
N23 |
H13 |
115.6 |
120.0 |
| C20 |
N21 |
C22 |
122.1 |
122.0 |
| C27 |
C26 |
C33 |
118.7 |
118.1 |
| C27 |
C28 |
N29 |
120.4 |
120.9 |
| C27 |
C28 |
H5 |
119.8 |
119.5 |
| N21 |
C20 |
H4 |
119.5 |
119.4 |
| C26 |
C33 |
C31 |
119.4 |
119.0 |
| C26 |
C33 |
H19 |
120.3 |
120.5 |
| C28 |
N29 |
C31 |
123.1 |
122.0 |
| C28 |
N29 |
O30 |
117.8 |
119.0 |
| N29 |
C28 |
H5 |
119.8 |
119.6 |
| O30 |
N29 |
C31 |
119.1 |
119.0 |
| N29 |
C31 |
C32 |
121.8 |
119.5 |
| C31 |
C32 |
H16 |
109.5 |
109.5 |
| C31 |
C32 |
H17 |
109.5 |
109.4 |
| C31 |
C32 |
H18 |
109.5 |
109.5 |
| H6 |
C1 |
H7 |
109.4 |
109.5 |
| H6 |
C1 |
H8 |
109.5 |
109.5 |
| H7 |
C1 |
H8 |
109.5 |
109.5 |
| H16 |
C32 |
H17 |
109.5 |
109.4 |
| H16 |
C32 |
H18 |
109.5 |
109.5 |
| H17 |
C32 |
H18 |
109.5 |
109.5 |
Torsion Angles for AQY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C12 |
C13 |
C14 |
N15 |
2.2 |
359.8 |
| C14 |
C13 |
C12 |
H3 |
180.0 |
180.3 |
| C12 |
C13 |
C14 |
H11 |
182.2 |
179.7 |
| C11 |
C12 |
C13 |
C14 |
359.0 |
360.0 |
| C11 |
C12 |
C13 |
H3 |
179.0 |
179.7 |
| C12 |
C11 |
N16 |
N15 |
0.5 |
359.3 |
| C12 |
C13 |
C14 |
H3 |
180.0 |
179.7 |
| N15 |
C14 |
C13 |
H11 |
180.0 |
180.1 |
| C11 |
N16 |
C17 |
C18 |
177.4 |
180.0 |
| N15 |
C14 |
C13 |
H3 |
182.2 |
180.0 |
| C13 |
C14 |
N15 |
H11 |
180.0 |
179.9 |
| C11 |
N16 |
N15 |
C14 |
0.7 |
0.5 |
| N10 |
C9 |
C17 |
C18 |
183.0 |
180.0 |
| N16 |
N15 |
C14 |
H11 |
178.0 |
180.1 |
| N15 |
N16 |
C17 |
C18 |
356.3 |
0.8 |
| C9 |
C17 |
N16 |
C18 |
183.3 |
180.1 |
| N16 |
C17 |
C18 |
C34 |
21.1 |
315.1 |
| N16 |
C17 |
C18 |
C19 |
205.5 |
135.9 |
| C9 |
C4 |
C5 |
H1 |
358.1 |
359.7 |
| N16 |
C17 |
C9 |
C18 |
176.3 |
179.9 |
| C9 |
C17 |
C18 |
C34 |
196.9 |
135.0 |
| C9 |
C17 |
C18 |
C19 |
21.3 |
315.8 |
| C3 |
C4 |
C5 |
H1 |
182.8 |
180.0 |
| C3 |
C2 |
C1 |
H6 |
90.3 |
270.0 |
| C3 |
C2 |
C1 |
H7 |
210.2 |
30.1 |
| C3 |
C2 |
C1 |
H8 |
330.2 |
150.1 |
| C3 |
C2 |
C7 |
F8 |
180.6 |
180.0 |
| C1 |
C2 |
C7 |
F8 |
1.1 |
0.0 |
| H6 |
C1 |
C2 |
H7 |
240.0 |
240.0 |
| H6 |
C1 |
C2 |
H8 |
120.0 |
119.9 |
| H7 |
C1 |
C2 |
H8 |
240.0 |
240.0 |
| C6 |
C5 |
C4 |
H1 |
180.0 |
180.1 |
| C4 |
C5 |
C6 |
H2 |
178.0 |
180.0 |
| C19 |
C18 |
C17 |
C34 |
184.4 |
180.8 |
| C17 |
C18 |
C34 |
H20 |
1.9 |
0.0 |
| C17 |
C18 |
C19 |
H12 |
358.4 |
359.7 |
| C2 |
C7 |
C6 |
H2 |
181.2 |
180.0 |
| C4 |
C5 |
C6 |
H1 |
180.0 |
179.9 |
| C7 |
C6 |
C5 |
H2 |
180.0 |
180.0 |
| C7 |
C6 |
C5 |
H1 |
178.0 |
180.0 |
| C5 |
C6 |
C7 |
H2 |
180.0 |
180.0 |
| F8 |
C7 |
C6 |
H2 |
359.5 |
360.0 |
| C17 |
C18 |
C34 |
C19 |
184.2 |
180.8 |
| C34 |
C18 |
C19 |
H12 |
182.7 |
180.5 |
| C17 |
C18 |
C19 |
C34 |
175.8 |
179.2 |
| C19 |
C18 |
C34 |
H20 |
177.7 |
179.2 |
| C18 |
C19 |
C20 |
N21 |
358.7 |
359.9 |
| C18 |
C19 |
C20 |
H4 |
178.7 |
179.7 |
| C17 |
C18 |
C34 |
C22 |
181.9 |
180.0 |
| C34 |
C22 |
N23 |
H13 |
162.3 |
354.9 |
| O25 |
C24 |
N23 |
H13 |
181.4 |
185.1 |
| O25 |
C24 |
C26 |
C33 |
157.1 |
360.0 |
| C17 |
C18 |
C19 |
C20 |
178.4 |
179.8 |
| C19 |
C20 |
N21 |
C22 |
359.6 |
359.8 |
| N21 |
C20 |
C19 |
H4 |
180.0 |
180.2 |
| N23 |
C24 |
C26 |
C33 |
337.3 |
180.0 |
| N21 |
C22 |
N23 |
C24 |
161.7 |
354.9 |
| C22 |
N23 |
C24 |
H13 |
180.0 |
180.0 |
| C22 |
N23 |
C24 |
C26 |
181.1 |
185.1 |
| C26 |
C24 |
N23 |
H13 |
1.2 |
5.1 |
| C27 |
C26 |
C24 |
C33 |
178.5 |
180.3 |
| C24 |
C26 |
C33 |
C31 |
178.9 |
180.1 |
| C24 |
C26 |
C33 |
H19 |
358.9 |
0.0 |
| C26 |
C24 |
N23 |
C22 |
181.1 |
185.1 |
| C24 |
N23 |
C22 |
H13 |
180.0 |
180.0 |
| C20 |
N21 |
C22 |
N23 |
181.2 |
180.0 |
| N21 |
C22 |
N23 |
H13 |
341.7 |
174.9 |
| C22 |
N21 |
C20 |
H4 |
179.6 |
180.0 |
| C24 |
C26 |
C27 |
C33 |
181.5 |
179.7 |
| C27 |
C26 |
C33 |
C31 |
0.3 |
359.7 |
| C27 |
C26 |
C33 |
H19 |
180.3 |
179.7 |
| C28 |
C27 |
C26 |
C33 |
359.3 |
0.3 |
| C27 |
C28 |
N29 |
C31 |
359.4 |
359.8 |
| C27 |
C28 |
N29 |
O30 |
179.9 |
179.7 |
| N29 |
C28 |
C27 |
H5 |
180.0 |
180.2 |
| C19 |
C20 |
N21 |
H4 |
180.0 |
179.8 |
| C33 |
C26 |
C24 |
N23 |
337.3 |
180.0 |
| C27 |
C28 |
N29 |
H5 |
180.0 |
179.8 |
| O30 |
N29 |
C28 |
C31 |
180.5 |
179.9 |
| C28 |
N29 |
C31 |
C32 |
179.9 |
180.0 |
| C26 |
C33 |
C31 |
H19 |
180.0 |
180.0 |
| C33 |
C31 |
C32 |
H16 |
89.9 |
269.8 |
| C33 |
C31 |
C32 |
H17 |
209.9 |
29.8 |
| C33 |
C31 |
C32 |
H18 |
329.9 |
149.8 |
| C26 |
C33 |
C31 |
N29 |
359.9 |
0.0 |
| C28 |
N29 |
C31 |
O30 |
180.5 |
179.9 |
| C31 |
N29 |
C28 |
H5 |
179.4 |
180.0 |
| N29 |
C31 |
C32 |
H16 |
270.2 |
90.0 |
| N29 |
C31 |
C32 |
H17 |
30.1 |
209.9 |
| N29 |
C31 |
C32 |
H18 |
150.2 |
329.9 |
| C28 |
N29 |
O30 |
C31 |
179.5 |
180.1 |
| O30 |
N29 |
C28 |
H5 |
359.8 |
359.9 |
| O30 |
N29 |
C31 |
C32 |
359.4 |
0.1 |
| C26 |
C33 |
C31 |
C32 |
180.2 |
180.2 |
| H16 |
C32 |
C31 |
H17 |
240.0 |
240.0 |
| H16 |
C32 |
C31 |
H18 |
120.0 |
120.0 |
| H17 |
C32 |
C31 |
H18 |
240.0 |
240.0 |
| C4 |
C5 |
H1 |
C6 |
180.0 |
180.1 |
| H1 |
C5 |
C6 |
H2 |
358.0 |
0.1 |
| H2 |
C6 |
C5 |
H1 |
358.0 |
0.1 |
| C12 |
C13 |
H3 |
C14 |
180.0 |
180.3 |
| H3 |
C13 |
C14 |
N15 |
182.2 |
180.0 |
| H3 |
C13 |
C14 |
H11 |
2.2 |
360.0 |
| C19 |
C20 |
H4 |
N21 |
180.0 |
180.2 |
| H4 |
C20 |
N21 |
C22 |
179.6 |
180.0 |
| C27 |
C28 |
H5 |
N29 |
180.0 |
180.2 |
| H5 |
C28 |
N29 |
C31 |
179.4 |
180.0 |
| H5 |
C28 |
N29 |
O30 |
359.8 |
359.9 |
| C2 |
C1 |
H6 |
H7 |
120.0 |
120.0 |
| C2 |
C1 |
H6 |
H8 |
240.0 |
240.1 |
| H7 |
C1 |
H6 |
H8 |
120.0 |
120.0 |
| C2 |
C1 |
H7 |
H6 |
240.0 |
240.0 |
| C2 |
C1 |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
C1 |
H7 |
H8 |
240.0 |
240.0 |
| C2 |
C1 |
H8 |
H6 |
120.0 |
119.9 |
| C2 |
C1 |
H8 |
H7 |
240.0 |
240.0 |
| H6 |
C1 |
H8 |
H7 |
119.9 |
120.0 |
| H10 |
C12 |
C13 |
C14 |
179.0 |
180.0 |
| H10 |
C12 |
C13 |
H3 |
359.0 |
359.7 |
| H10 |
C12 |
C11 |
N16 |
179.7 |
180.5 |
| C13 |
C14 |
H11 |
N15 |
180.0 |
180.1 |
| H11 |
C14 |
C13 |
H3 |
2.2 |
360.0 |
| H12 |
C19 |
C18 |
C34 |
182.7 |
180.5 |
| H12 |
C19 |
C20 |
N21 |
178.6 |
180.0 |
| H12 |
C19 |
C20 |
H4 |
358.7 |
359.8 |
| C22 |
N23 |
H13 |
C24 |
180.0 |
180.0 |
| H14 |
C27 |
C26 |
C33 |
179.4 |
180.2 |
| H14 |
C27 |
C28 |
N29 |
180.8 |
180.0 |
| H14 |
C27 |
C28 |
H5 |
0.8 |
359.9 |
| C31 |
C32 |
H16 |
H17 |
120.0 |
120.0 |
| C31 |
C32 |
H16 |
H18 |
240.0 |
240.0 |
| H17 |
C32 |
H16 |
H18 |
120.0 |
120.0 |
| C31 |
C32 |
H17 |
H16 |
240.0 |
240.0 |
| C31 |
C32 |
H17 |
H18 |
120.0 |
120.0 |
| H16 |
C32 |
H17 |
H18 |
240.0 |
240.0 |
| C31 |
C32 |
H18 |
H16 |
120.0 |
120.0 |
| C31 |
C32 |
H18 |
H17 |
240.0 |
240.0 |
| H16 |
C32 |
H18 |
H17 |
120.0 |
120.0 |
| C26 |
C33 |
H19 |
C31 |
180.0 |
180.0 |