PDB Chemical Component AQD
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for AQD
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| CAG |
CAI |
1.396 |
1.383 |
| CAG |
CAF |
1.394 |
1.382 |
| CAI |
CAT |
1.394 |
1.383 |
| CAF |
CAH |
1.390 |
1.382 |
| CAT |
CAO |
1.558 |
1.507 |
| CAT |
CAJ |
1.397 |
1.382 |
| CAO |
NBA |
1.427 |
1.469 |
| CAH |
CAJ |
1.401 |
1.383 |
| CAC |
CAY |
1.552 |
1.530 |
| CAY |
NBA |
1.397 |
1.474 |
| CAY |
CAZ |
1.458 |
1.543 |
| NBA |
CAN |
1.474 |
1.479 |
| CAN |
CAM |
1.627 |
1.549 |
| CAZ |
CAM |
1.522 |
1.552 |
| CAZ |
NAQ |
1.448 |
1.465 |
| NAQ |
CAS |
1.431 |
1.348 |
| CAB |
OAR |
1.433 |
1.428 |
| OAR |
CAW |
1.415 |
1.357 |
| CAS |
OAD |
1.211 |
1.216 |
| CAS |
CAX |
1.515 |
1.472 |
| CAW |
CAX |
1.391 |
1.404 |
| CAW |
CAK |
1.395 |
1.383 |
| CAX |
CAL |
1.391 |
1.399 |
| CAK |
CAV |
1.402 |
1.390 |
| CAL |
CAU |
1.388 |
1.366 |
| CAV |
CAU |
1.393 |
1.395 |
| CAV |
NAP |
1.453 |
1.391 |
| CAU |
CLA |
1.762 |
1.735 |
| NAP |
CAA |
1.441 |
1.465 |
| CAB |
H1 |
1.100 |
1.090 |
| CAB |
H2 |
1.100 |
1.091 |
| CAB |
H3 |
1.100 |
1.090 |
| CAK |
H4 |
1.080 |
1.080 |
| NAP |
H5 |
1.000 |
0.970 |
| CAA |
H6 |
1.100 |
1.089 |
| CAA |
H7 |
1.100 |
1.090 |
| CAA |
H8 |
1.099 |
1.091 |
| CAL |
H9 |
1.080 |
1.080 |
| NAQ |
H10 |
1.000 |
0.970 |
| CAZ |
H11 |
1.100 |
1.089 |
| CAY |
H12 |
1.100 |
1.090 |
| CAC |
H13 |
1.100 |
1.090 |
| CAC |
H14 |
1.100 |
1.089 |
| CAC |
H15 |
1.100 |
1.090 |
| CAM |
H16 |
1.100 |
1.090 |
| CAM |
H17 |
1.100 |
1.090 |
| CAN |
H18 |
1.100 |
1.090 |
| CAN |
H19 |
1.100 |
1.090 |
| CAO |
H21 |
1.100 |
1.090 |
| CAO |
H22 |
1.100 |
1.090 |
| CAI |
H23 |
1.080 |
1.080 |
| CAG |
H24 |
1.080 |
1.080 |
| CAF |
H25 |
1.080 |
1.079 |
| CAH |
H26 |
1.080 |
1.080 |
| CAJ |
H27 |
1.080 |
1.080 |
Bond Angles for AQD
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAG |
CAI |
H23 |
120.1 |
120.0 |
| CAG |
CAF |
CAH |
120.3 |
120.0 |
| CAF |
CAG |
H24 |
120.1 |
120.1 |
| CAG |
CAF |
H25 |
119.9 |
120.0 |
| CAI |
CAT |
CAJ |
120.4 |
120.0 |
| CAF |
CAH |
CAJ |
120.1 |
120.0 |
| CAH |
CAF |
H25 |
119.9 |
120.0 |
| CAF |
CAH |
H26 |
119.9 |
120.0 |
| CAT |
CAO |
H21 |
108.3 |
109.5 |
| CAT |
CAO |
H22 |
108.3 |
109.5 |
| CAT |
CAJ |
CAH |
119.4 |
120.0 |
| CAT |
CAJ |
H27 |
120.3 |
120.0 |
| CAJ |
CAH |
H26 |
119.9 |
120.0 |
| CAH |
CAJ |
H27 |
120.3 |
120.0 |
| CAC |
CAY |
NBA |
109.4 |
109.9 |
| CAC |
CAY |
H12 |
108.5 |
110.0 |
| CAY |
NBA |
CAN |
106.2 |
108.6 |
| NBA |
CAY |
H12 |
110.6 |
109.9 |
| CAY |
CAZ |
CAM |
108.2 |
103.0 |
| CAY |
CAZ |
H11 |
110.2 |
110.9 |
| NBA |
CAN |
H18 |
110.9 |
110.4 |
| NBA |
CAN |
H19 |
110.9 |
110.5 |
| CAN |
CAM |
H16 |
111.6 |
111.0 |
| CAN |
CAM |
H17 |
111.7 |
111.1 |
| CAM |
CAZ |
H11 |
109.3 |
110.7 |
| CAZ |
CAM |
H16 |
111.7 |
111.0 |
| CAZ |
CAM |
H17 |
111.7 |
111.0 |
| CAZ |
NAQ |
H10 |
122.3 |
120.0 |
| CAB |
OAR |
CAW |
116.3 |
117.0 |
| OAR |
CAB |
H1 |
109.5 |
109.5 |
| OAR |
CAB |
H2 |
109.5 |
109.5 |
| OAR |
CAB |
H3 |
109.5 |
109.5 |
| OAR |
CAW |
CAX |
118.9 |
120.2 |
| OAR |
CAW |
CAK |
120.8 |
120.1 |
| CAK |
CAW |
CAX |
120.3 |
119.7 |
| CAW |
CAX |
CAL |
121.7 |
119.8 |
| CAW |
CAK |
CAV |
118.2 |
119.9 |
| CAW |
CAK |
H4 |
120.9 |
120.1 |
| CAX |
CAL |
H9 |
121.0 |
120.0 |
| CAK |
CAV |
CAU |
120.9 |
120.2 |
| CAK |
CAV |
NAP |
119.9 |
119.9 |
| CAV |
CAK |
H4 |
120.9 |
120.0 |
| NAP |
CAV |
CAU |
119.2 |
119.9 |
| CAV |
CAU |
CLA |
120.1 |
119.8 |
| CAV |
NAP |
CAA |
120.0 |
120.0 |
| CAV |
NAP |
H5 |
106.7 |
120.1 |
| CAA |
NAP |
H5 |
106.8 |
119.9 |
| NAP |
CAA |
H6 |
109.5 |
109.5 |
| NAP |
CAA |
H7 |
109.5 |
109.4 |
| NAP |
CAA |
H8 |
109.5 |
109.5 |
| H1 |
CAB |
H2 |
109.5 |
109.5 |
| H1 |
CAB |
H3 |
109.4 |
109.5 |
| H2 |
CAB |
H3 |
109.5 |
109.5 |
| H6 |
CAA |
H7 |
109.4 |
109.5 |
| H6 |
CAA |
H8 |
109.5 |
109.5 |
| H7 |
CAA |
H8 |
109.5 |
109.5 |
| H13 |
CAC |
H14 |
109.5 |
109.5 |
| H13 |
CAC |
H15 |
109.4 |
109.5 |
| H14 |
CAC |
H15 |
109.5 |
109.5 |
| H16 |
CAM |
H17 |
109.5 |
110.9 |
| H18 |
CAN |
H19 |
109.5 |
110.3 |
| H21 |
CAO |
H22 |
109.5 |
109.4 |
Torsion Angles for AQD
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| CAG |
CAI |
CAT |
CAJ |
1.1 |
0.3 |
| CAF |
CAG |
CAI |
H23 |
179.1 |
180.0 |
| CAG |
CAF |
CAH |
CAJ |
360.0 |
359.8 |
| CAH |
CAF |
CAG |
H25 |
180.0 |
180.0 |
| CAG |
CAF |
CAH |
H26 |
180.0 |
180.0 |
| CAI |
CAT |
CAO |
H21 |
226.7 |
150.2 |
| CAI |
CAT |
CAO |
H22 |
345.4 |
30.2 |
| CAI |
CAT |
CAJ |
CAH |
359.2 |
359.5 |
| CAI |
CAT |
CAJ |
H27 |
179.2 |
179.8 |
| CAH |
CAF |
CAG |
H24 |
180.4 |
180.0 |
| CAG |
CAF |
CAH |
H25 |
180.0 |
180.0 |
| CAT |
CAJ |
CAH |
CAF |
0.2 |
0.5 |
| CAJ |
CAH |
CAF |
H26 |
180.0 |
179.8 |
| CAF |
CAH |
CAJ |
H27 |
180.2 |
180.2 |
| H21 |
CAO |
CAT |
H22 |
241.3 |
120.0 |
| CAF |
CAH |
CAJ |
CAT |
0.2 |
0.5 |
| CAJ |
CAT |
CAO |
H21 |
45.5 |
330.0 |
| CAJ |
CAT |
CAO |
H22 |
164.2 |
210.0 |
| CAT |
CAJ |
CAH |
H26 |
180.3 |
180.3 |
| CAH |
CAJ |
CAT |
H27 |
180.0 |
179.7 |
| CAO |
NBA |
CAY |
H12 |
45.8 |
3.9 |
| CAO |
NBA |
CAN |
H18 |
325.1 |
94.8 |
| CAO |
NBA |
CAN |
H19 |
87.0 |
332.5 |
| CAJ |
CAH |
CAF |
H25 |
180.0 |
179.7 |
| CAF |
CAH |
CAJ |
H26 |
180.0 |
180.2 |
| CAT |
CAJ |
CAH |
H27 |
180.0 |
180.3 |
| CAC |
CAY |
NBA |
CAN |
163.1 |
120.4 |
| NBA |
CAY |
CAC |
H12 |
120.8 |
121.1 |
| CAC |
CAY |
CAZ |
CAM |
209.5 |
262.8 |
| CAC |
CAY |
CAZ |
H11 |
90.0 |
144.4 |
| CAC |
CAY |
NBA |
H12 |
240.5 |
238.8 |
| NBA |
CAY |
CAZ |
CAM |
329.1 |
22.3 |
| NBA |
CAY |
CAZ |
H11 |
209.6 |
263.9 |
| CAY |
NBA |
CAN |
H18 |
84.5 |
217.1 |
| CAY |
NBA |
CAN |
H19 |
206.4 |
94.8 |
| CAM |
CAZ |
CAY |
H11 |
119.5 |
118.4 |
| CAY |
CAZ |
CAM |
H16 |
250.1 |
82.4 |
| CAY |
CAZ |
CAM |
H17 |
127.2 |
206.2 |
| CAY |
CAZ |
NAQ |
H10 |
322.3 |
340.0 |
| CAN |
NBA |
CAY |
H12 |
282.6 |
241.6 |
| NBA |
CAN |
CAM |
H16 |
133.3 |
279.0 |
| NBA |
CAN |
CAM |
H17 |
256.2 |
155.2 |
| H18 |
CAN |
NBA |
H19 |
238.0 |
122.3 |
| CAY |
NBA |
CAN |
CAM |
325.4 |
336.0 |
| CAN |
CAM |
CAZ |
H11 |
128.7 |
82.9 |
| CAZ |
CAM |
CAN |
H16 |
241.5 |
118.1 |
| CAZ |
CAM |
CAN |
H17 |
118.6 |
241.9 |
| H16 |
CAM |
CAN |
H17 |
237.1 |
123.8 |
| CAY |
CAZ |
CAM |
H11 |
240.0 |
241.4 |
| CAN |
CAM |
CAZ |
H16 |
118.5 |
241.9 |
| CAN |
CAM |
CAZ |
H17 |
241.4 |
118.2 |
| CAM |
CAZ |
NAQ |
H10 |
80.4 |
93.6 |
| H16 |
CAM |
CAZ |
H17 |
122.9 |
236.3 |
| CAB |
OAR |
CAW |
CAX |
158.2 |
180.0 |
| CAB |
OAR |
CAW |
CAK |
340.9 |
0.3 |
| H1 |
CAB |
OAR |
H2 |
240.0 |
240.0 |
| H1 |
CAB |
OAR |
H3 |
120.0 |
120.0 |
| H2 |
CAB |
OAR |
H3 |
240.0 |
240.0 |
| CAW |
OAR |
CAB |
H1 |
180.0 |
60.0 |
| CAW |
OAR |
CAB |
H2 |
300.0 |
180.0 |
| CAW |
OAR |
CAB |
H3 |
60.0 |
300.0 |
| CAK |
CAW |
OAR |
CAX |
182.7 |
180.2 |
| OAR |
CAW |
CAX |
CAL |
180.3 |
179.8 |
| OAR |
CAW |
CAK |
CAV |
179.5 |
180.0 |
| OAR |
CAW |
CAK |
H4 |
359.5 |
359.9 |
| CAS |
CAX |
CAL |
H9 |
358.2 |
0.1 |
| OAR |
CAW |
CAX |
CAK |
182.7 |
180.2 |
| CAX |
CAW |
CAK |
CAV |
2.2 |
0.2 |
| CAX |
CAW |
CAK |
H4 |
182.2 |
180.2 |
| CAW |
CAX |
CAL |
H9 |
181.5 |
180.2 |
| OAR |
CAW |
CAK |
CAX |
177.3 |
179.8 |
| CAK |
CAW |
CAX |
CAL |
357.6 |
359.6 |
| CAW |
CAK |
CAV |
CAU |
358.7 |
0.1 |
| CAW |
CAK |
CAV |
NAP |
179.2 |
180.0 |
| CAV |
CAK |
CAW |
H4 |
180.0 |
180.0 |
| CAV |
CAK |
CAW |
CAX |
2.2 |
0.2 |
| CAW |
CAK |
CAV |
H4 |
180.0 |
180.0 |
| NAP |
CAV |
CAK |
CAU |
180.4 |
179.9 |
| CAK |
CAV |
CAU |
CLA |
181.1 |
180.0 |
| CAK |
CAV |
NAP |
CAA |
349.8 |
0.0 |
| CAK |
CAV |
NAP |
H5 |
111.3 |
180.0 |
| CAW |
CAX |
CAL |
CAU |
1.5 |
0.4 |
| CAK |
CAV |
CAU |
NAP |
180.4 |
179.9 |
| CAU |
CAV |
CAK |
H4 |
178.7 |
180.1 |
| CAU |
CAV |
NAP |
CAA |
170.2 |
180.0 |
| CAU |
CAV |
NAP |
H5 |
291.7 |
360.0 |
| CAK |
CAV |
NAP |
CAU |
179.6 |
180.1 |
| NAP |
CAV |
CAK |
H4 |
359.2 |
0.0 |
| NAP |
CAV |
CAU |
CLA |
0.7 |
0.1 |
| CAA |
NAP |
CAV |
H5 |
238.5 |
180.0 |
| CAV |
NAP |
CAA |
H6 |
180.0 |
180.0 |
| CAV |
NAP |
CAA |
H7 |
300.0 |
300.0 |
| CAV |
NAP |
CAA |
H8 |
60.0 |
60.0 |
| CAA |
NAP |
CAV |
CAU |
170.2 |
180.0 |
| CAV |
NAP |
CAA |
H5 |
121.5 |
180.0 |
| H6 |
CAA |
NAP |
H7 |
240.0 |
240.0 |
| H6 |
CAA |
NAP |
H8 |
120.0 |
120.0 |
| H7 |
CAA |
NAP |
H8 |
240.0 |
240.0 |
| H1 |
CAB |
OAR |
CAW |
180.0 |
60.0 |
| OAR |
CAB |
H1 |
H2 |
120.0 |
120.0 |
| OAR |
CAB |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
CAB |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
CAB |
OAR |
CAW |
300.0 |
180.0 |
| OAR |
CAB |
H2 |
H1 |
240.0 |
240.0 |
| OAR |
CAB |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
CAB |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
CAB |
OAR |
CAW |
60.0 |
300.0 |
| OAR |
CAB |
H3 |
H1 |
120.0 |
120.0 |
| OAR |
CAB |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
CAB |
H3 |
H2 |
120.0 |
120.0 |
| H4 |
CAK |
CAW |
CAX |
182.2 |
180.2 |
| CAW |
CAK |
H4 |
CAV |
180.0 |
180.0 |
| H4 |
CAK |
CAV |
CAU |
178.7 |
180.1 |
| H4 |
CAK |
CAV |
NAP |
359.2 |
0.0 |
| H5 |
NAP |
CAV |
CAU |
291.7 |
360.0 |
| CAV |
NAP |
H5 |
CAA |
230.5 |
180.0 |
| H5 |
NAP |
CAA |
H6 |
58.6 |
0.0 |
| H5 |
NAP |
CAA |
H7 |
178.5 |
120.0 |
| H5 |
NAP |
CAA |
H8 |
298.5 |
240.0 |
| H6 |
CAA |
NAP |
H5 |
58.6 |
0.0 |
| NAP |
CAA |
H6 |
H7 |
120.0 |
120.0 |
| NAP |
CAA |
H6 |
H8 |
240.0 |
240.0 |
| H7 |
CAA |
H6 |
H8 |
120.0 |
120.0 |
| H7 |
CAA |
NAP |
H5 |
178.5 |
120.0 |
| NAP |
CAA |
H7 |
H6 |
240.0 |
240.0 |
| NAP |
CAA |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
CAA |
H7 |
H8 |
240.0 |
240.0 |
| H8 |
CAA |
NAP |
H5 |
298.5 |
240.0 |
| NAP |
CAA |
H8 |
H6 |
120.0 |
120.1 |
| NAP |
CAA |
H8 |
H7 |
240.0 |
240.1 |
| H6 |
CAA |
H8 |
H7 |
119.9 |
120.0 |
| CAY |
CAZ |
H11 |
CAM |
118.8 |
113.7 |
| H11 |
CAZ |
CAM |
H16 |
10.2 |
201.0 |
| H11 |
CAZ |
CAM |
H17 |
247.2 |
324.7 |
| H11 |
CAZ |
NAQ |
H10 |
198.5 |
216.7 |
| CAC |
CAY |
H12 |
NBA |
120.0 |
121.2 |
| H12 |
CAY |
NBA |
CAN |
282.6 |
241.6 |
| H12 |
CAY |
CAZ |
CAM |
88.5 |
141.7 |
| H12 |
CAY |
CAZ |
H11 |
329.0 |
23.3 |
| H13 |
CAC |
CAY |
NBA |
180.0 |
61.4 |
| H13 |
CAC |
CAY |
H12 |
59.2 |
300.3 |
| H14 |
CAC |
H13 |
H15 |
120.0 |
120.0 |
| H14 |
CAC |
CAY |
NBA |
300.0 |
181.5 |
| H14 |
CAC |
CAY |
H12 |
179.2 |
60.3 |
| H13 |
CAC |
H14 |
H15 |
240.0 |
240.0 |
| H15 |
CAC |
CAY |
NBA |
60.0 |
301.4 |
| H15 |
CAC |
CAY |
H12 |
299.2 |
180.3 |
| H13 |
CAC |
H15 |
H14 |
120.0 |
120.0 |
| CAN |
CAM |
H16 |
H17 |
124.1 |
236.1 |
| H16 |
CAM |
CAZ |
H11 |
10.2 |
201.0 |
| CAZ |
CAM |
H16 |
H17 |
235.8 |
123.8 |
| CAN |
CAM |
H17 |
H16 |
235.9 |
123.9 |
| H17 |
CAM |
CAZ |
H11 |
247.2 |
324.7 |
| CAZ |
CAM |
H17 |
H16 |
124.2 |
236.2 |
| NBA |
CAN |
H18 |
H19 |
122.8 |
237.6 |
| H18 |
CAN |
CAM |
H16 |
14.3 |
37.8 |
| H18 |
CAN |
CAM |
H17 |
137.2 |
274.0 |
| NBA |
CAN |
H19 |
H18 |
237.2 |
122.3 |
| H19 |
CAN |
CAM |
H16 |
252.3 |
160.1 |
| H19 |
CAN |
CAM |
H17 |
15.2 |
36.3 |
| CAT |
CAO |
H21 |
H22 |
117.9 |
240.0 |
| CAT |
CAO |
H22 |
H21 |
242.1 |
120.0 |
| H23 |
CAI |
CAT |
CAJ |
181.1 |
180.3 |
| H24 |
CAG |
CAI |
H23 |
359.1 |
360.0 |
| H24 |
CAG |
CAF |
CAH |
180.4 |
180.0 |
| H24 |
CAG |
CAF |
H25 |
0.4 |
0.0 |
| CAG |
CAF |
H25 |
CAH |
180.0 |
180.0 |
| H25 |
CAF |
CAG |
H24 |
0.4 |
0.0 |
| H25 |
CAF |
CAH |
CAJ |
180.0 |
179.7 |
| H25 |
CAF |
CAH |
H26 |
360.0 |
360.0 |
| CAF |
CAH |
H26 |
CAJ |
180.0 |
179.8 |
| H26 |
CAH |
CAF |
H25 |
360.0 |
360.0 |
| H26 |
CAH |
CAJ |
H27 |
0.2 |
360.0 |
| CAT |
CAJ |
H27 |
CAH |
180.0 |
179.7 |
| H27 |
CAJ |
CAH |
H26 |
0.2 |
360.0 |