PDB Chemical Component APZ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for APZ
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N10 |
C5 |
1.338 |
1.347 |
N10 |
N7 |
1.396 |
1.395 |
N10 |
H10 |
1.020 |
0.970 |
C5 |
O11 |
1.232 |
1.215 |
C5 |
C2 |
1.467 |
1.476 |
C2 |
C6 |
1.409 |
1.389 |
C2 |
C1 |
1.413 |
1.410 |
C6 |
C12 |
1.402 |
1.380 |
C6 |
H6 |
1.104 |
1.080 |
C12 |
C9 |
1.409 |
1.392 |
C12 |
H12 |
1.104 |
1.080 |
C9 |
C4 |
1.403 |
1.392 |
C9 |
N13 |
1.357 |
1.391 |
C4 |
C1 |
1.404 |
1.385 |
C4 |
H4 |
1.102 |
1.080 |
C1 |
C3 |
1.469 |
1.479 |
C3 |
O8 |
1.229 |
1.215 |
C3 |
N7 |
1.336 |
1.347 |
N7 |
H7 |
1.020 |
0.970 |
N13 |
H131 |
1.020 |
0.970 |
N13 |
H132 |
1.020 |
0.969 |
Bond Angles for APZ
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C5 |
N10 |
N7 |
122.0 |
122.0 |
C5 |
N10 |
H10 |
116.8 |
119.0 |
N10 |
C5 |
O11 |
120.0 |
120.2 |
N10 |
C5 |
C2 |
119.9 |
119.6 |
N7 |
N10 |
H10 |
121.3 |
119.0 |
N10 |
N7 |
C3 |
121.9 |
122.0 |
N10 |
N7 |
H7 |
121.3 |
119.0 |
O11 |
C5 |
C2 |
120.1 |
120.2 |
C5 |
C2 |
C6 |
122.2 |
121.5 |
C5 |
C2 |
C1 |
117.8 |
118.5 |
C6 |
C2 |
C1 |
120.0 |
120.1 |
C2 |
C6 |
C12 |
120.0 |
119.7 |
C2 |
C6 |
H6 |
120.3 |
120.2 |
C2 |
C1 |
C4 |
119.8 |
119.9 |
C2 |
C1 |
C3 |
119.0 |
118.6 |
C12 |
C6 |
H6 |
119.8 |
120.1 |
C6 |
C12 |
C9 |
120.0 |
120.5 |
C6 |
C12 |
H12 |
119.7 |
119.8 |
C9 |
C12 |
H12 |
120.3 |
119.7 |
C12 |
C9 |
C4 |
120.2 |
120.3 |
C12 |
C9 |
N13 |
120.0 |
119.8 |
C4 |
C9 |
N13 |
119.9 |
119.9 |
C9 |
C4 |
C1 |
120.1 |
119.6 |
C9 |
C4 |
H4 |
119.9 |
120.2 |
C9 |
N13 |
H131 |
120.0 |
120.0 |
C9 |
N13 |
H132 |
108.5 |
119.9 |
C1 |
C4 |
H4 |
120.0 |
120.2 |
C4 |
C1 |
C3 |
121.2 |
121.5 |
C1 |
C3 |
O8 |
120.2 |
120.3 |
C1 |
C3 |
N7 |
119.4 |
119.4 |
O8 |
C3 |
N7 |
120.4 |
120.3 |
C3 |
N7 |
H7 |
116.8 |
119.0 |
H131 |
N13 |
H132 |
108.5 |
120.0 |
Torsion Angles for APZ
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
N7 |
N10 |
C5 |
H10 |
180.0 |
180.0 |
C5 |
N10 |
N7 |
C3 |
359.9 |
-0.0 |
C5 |
N10 |
N7 |
H7 |
179.9 |
179.9 |
O11 |
C5 |
N10 |
C2 |
179.4 |
180.0 |
N10 |
C5 |
C2 |
C6 |
180.4 |
180.0 |
N10 |
C5 |
C2 |
C1 |
359.1 |
-0.0 |
C5 |
N10 |
N7 |
H10 |
180.0 |
180.0 |
N7 |
N10 |
C5 |
O11 |
179.8 |
180.0 |
N7 |
N10 |
C5 |
C2 |
0.4 |
-0.0 |
C1 |
C3 |
N7 |
N10 |
0.3 |
-0.0 |
O8 |
C3 |
N7 |
N10 |
179.9 |
180.0 |
C3 |
N7 |
N10 |
H7 |
180.0 |
180.1 |
C5 |
N10 |
H10 |
N7 |
180.0 |
180.0 |
H10 |
N10 |
C5 |
O11 |
359.9 |
-0.0 |
H10 |
N10 |
C5 |
C2 |
180.5 |
180.0 |
H10 |
N10 |
N7 |
C3 |
179.8 |
180.0 |
H10 |
N10 |
N7 |
H7 |
359.8 |
359.9 |
O11 |
C5 |
N10 |
N7 |
179.8 |
180.0 |
O11 |
C5 |
N10 |
H10 |
359.9 |
-0.0 |
N10 |
C5 |
O11 |
C2 |
180.6 |
180.0 |
O11 |
C5 |
C2 |
C6 |
1.0 |
-0.0 |
O11 |
C5 |
C2 |
C1 |
179.7 |
180.0 |
C2 |
C5 |
N10 |
N7 |
0.4 |
-0.0 |
C2 |
C5 |
N10 |
H10 |
180.5 |
180.0 |
N10 |
C5 |
C2 |
O11 |
179.4 |
180.0 |
C6 |
C2 |
C5 |
C1 |
181.3 |
180.0 |
C5 |
C2 |
C6 |
C12 |
179.5 |
180.0 |
C5 |
C2 |
C6 |
H6 |
359.5 |
-0.0 |
C5 |
C2 |
C1 |
C4 |
180.3 |
179.8 |
C5 |
C2 |
C1 |
C3 |
1.0 |
360.0 |
C5 |
C2 |
C6 |
C1 |
178.7 |
180.0 |
C6 |
C2 |
C1 |
C4 |
359.0 |
359.8 |
C6 |
C2 |
C1 |
C3 |
179.8 |
180.0 |
C12 |
C6 |
C2 |
H6 |
180.0 |
180.0 |
C2 |
C6 |
C12 |
C9 |
359.7 |
-0.0 |
C2 |
C6 |
C12 |
H12 |
179.7 |
180.0 |
C5 |
C2 |
C1 |
C6 |
181.3 |
180.0 |
C1 |
C2 |
C6 |
C12 |
0.8 |
-0.0 |
C1 |
C2 |
C6 |
H6 |
180.8 |
180.0 |
C9 |
C4 |
C1 |
C2 |
0.7 |
0.5 |
C2 |
C1 |
C4 |
H4 |
180.7 |
180.2 |
C4 |
C1 |
C2 |
C3 |
179.3 |
179.8 |
C2 |
C1 |
C3 |
O8 |
179.6 |
180.0 |
C2 |
C1 |
C3 |
N7 |
359.3 |
-0.0 |
C12 |
C6 |
C2 |
C1 |
0.8 |
-0.0 |
C2 |
C6 |
C12 |
H6 |
180.0 |
180.0 |
C9 |
C12 |
C6 |
H12 |
180.0 |
180.0 |
C6 |
C12 |
C9 |
C4 |
360.0 |
0.2 |
C6 |
C12 |
C9 |
N13 |
180.1 |
180.0 |
H6 |
C6 |
C2 |
C1 |
180.8 |
180.0 |
C2 |
C6 |
H6 |
C12 |
180.0 |
180.0 |
H6 |
C6 |
C12 |
C9 |
179.7 |
180.0 |
H6 |
C6 |
C12 |
H12 |
359.7 |
360.0 |
C9 |
C12 |
C6 |
H6 |
179.7 |
180.0 |
C6 |
C12 |
C9 |
H12 |
180.0 |
180.0 |
C4 |
C9 |
C12 |
N13 |
179.9 |
180.2 |
C12 |
C9 |
C4 |
C1 |
359.8 |
359.5 |
C12 |
C9 |
C4 |
H4 |
179.8 |
179.8 |
C12 |
C9 |
N13 |
H131 |
180.0 |
360.0 |
C12 |
C9 |
N13 |
H132 |
54.7 |
179.7 |
H12 |
C12 |
C6 |
H6 |
359.7 |
360.0 |
C6 |
C12 |
H12 |
C9 |
180.0 |
180.0 |
H12 |
C12 |
C9 |
C4 |
180.0 |
180.2 |
H12 |
C12 |
C9 |
N13 |
0.1 |
0.0 |
C2 |
C1 |
C4 |
C9 |
0.7 |
0.5 |
C4 |
C9 |
C12 |
H12 |
180.0 |
180.2 |
C12 |
C9 |
C4 |
N13 |
180.1 |
179.8 |
C4 |
C9 |
N13 |
H131 |
0.1 |
179.8 |
C4 |
C9 |
N13 |
H132 |
234.8 |
359.5 |
C1 |
C4 |
C9 |
H4 |
180.0 |
179.8 |
C9 |
C4 |
C1 |
C3 |
179.9 |
180.2 |
N13 |
C9 |
C12 |
H12 |
0.1 |
0.0 |
C12 |
C9 |
N13 |
C4 |
179.9 |
180.2 |
N13 |
C9 |
C4 |
C1 |
179.7 |
179.7 |
N13 |
C9 |
C4 |
H4 |
359.7 |
359.9 |
H131 |
N13 |
C9 |
H132 |
125.3 |
180.3 |
C2 |
C1 |
C4 |
C3 |
180.7 |
180.2 |
C1 |
C4 |
C9 |
N13 |
179.7 |
179.7 |
C9 |
C4 |
C1 |
H4 |
180.0 |
180.2 |
C4 |
C1 |
C3 |
O8 |
0.3 |
0.2 |
C4 |
C1 |
C3 |
N7 |
180.0 |
180.2 |
H4 |
C4 |
C9 |
N13 |
359.7 |
359.9 |
C9 |
C4 |
H4 |
C1 |
180.0 |
179.8 |
H4 |
C4 |
C1 |
C3 |
359.9 |
360.0 |
N10 |
N7 |
C3 |
C1 |
0.3 |
360.0 |
C2 |
C1 |
C3 |
C4 |
179.3 |
179.8 |
C3 |
C1 |
C4 |
H4 |
359.9 |
360.0 |
O8 |
C3 |
C1 |
N7 |
180.3 |
180.0 |
C1 |
C3 |
N7 |
H7 |
180.3 |
180.1 |
N10 |
N7 |
C3 |
O8 |
179.9 |
180.0 |
C1 |
C3 |
O8 |
N7 |
179.7 |
180.0 |
O8 |
C3 |
N7 |
H7 |
359.9 |
0.1 |
C3 |
N7 |
N10 |
H10 |
179.8 |
180.0 |
N10 |
N7 |
C3 |
H7 |
180.0 |
179.9 |
C1 |
C3 |
N7 |
O8 |
180.3 |
180.0 |
H7 |
N7 |
N10 |
H10 |
359.8 |
359.9 |
N10 |
N7 |
H7 |
C3 |
180.0 |
180.1 |
C9 |
N13 |
H131 |
H132 |
234.7 |
179.7 |
C9 |
N13 |
H132 |
H131 |
131.8 |
180.3 |