PDB Chemical Component APV

Ideal Model

Chemical Description

Name 6-(5-AMINO-5-CARBOXY-PENTANOYLAMINO)-3-HYDROXYMETHYL-7-OXO-4-THIA-1-AZA-BICYCLO[3.2.0]HEPTANE-2-CARBOXYLIC ACID
Synonyms ALPHA-HYDROXYMETHYL-BETA-DEMETHYL-ISOPENICILLIN N
Formula C13 H19 N3 O7 S
Formal charge 0
Molecular weight 361.371 g/mol
Component type NON-POLYMER

Chemical features

Atom count 43
Chiral atom count 5
Chiral atoms C2 C12 C16 C30 C32
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (2S,3S,5R,6R)-6-{[(5S)-5-amino-5-carboxypentanoyl]amino}-3-(hydroxymethyl)-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid
Systematic name (OpenEye OEToolkits) (2S,3S,5R,6R)-6-[[(5S)-5-amino-6-hydroxy-6-oxo-hexanoyl]amino]-3-(hydroxymethyl)-7-oxo-4-thia-1-azabicyclo[3.2.0]heptane-2-carboxylic acid

Chemical Descriptors

Stereo SMILES (CACTVS) N[C@@H](CCCC(=O)N[C@H]1[C@H]2S[C@H](CO)[C@@H](N2C1=O)C(O)=O)C(O)=O
SMILES (CACTVS) N[CH](CCCC(=O)N[CH]1[CH]2S[CH](CO)[CH](N2C1=O)C(O)=O)C(O)=O
Stereo SMILES (OpenEye) C(C[C@@H](C(=O)O)N)CC(=O)N[C@H]1[C@@H]2N(C1=O)[C@H]([C@H](S2)CO)C(=O)O
InChI descriptor InChI=1S/C13H19N3O7S/c14-5(12(20)21)2-1-3-7(18)15-8-10(19)16-9(13(22)23)6(4-17)24-11(8)16/h5-6,8-9,11,17H,1-4,14H2,(H,15,18)(H,20,21)(H,22,23)/t5-,6+,8+,9+,11+/m0/s1
InChIKey descriptor ONQGMOJLKCORAC-DANLAGSESA-N

Status Information

Last modified 2020-06-17
Created 2003-02-19
Release status REL
Model PDB code 1ODN
Processing site EBI